Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G18360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071474: cellular hyperosmotic response0.00E+00
2GO:0006114: glycerol biosynthetic process0.00E+00
3GO:0018023: peptidyl-lysine trimethylation0.00E+00
4GO:1902458: positive regulation of stomatal opening0.00E+00
5GO:0006429: leucyl-tRNA aminoacylation0.00E+00
6GO:0019685: photosynthesis, dark reaction0.00E+00
7GO:0002184: cytoplasmic translational termination0.00E+00
8GO:0017038: protein import0.00E+00
9GO:0046460: neutral lipid biosynthetic process0.00E+00
10GO:0031054: pre-miRNA processing0.00E+00
11GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
12GO:0090279: regulation of calcium ion import0.00E+00
13GO:0031116: positive regulation of microtubule polymerization0.00E+00
14GO:0090470: shoot organ boundary specification0.00E+00
15GO:0042820: vitamin B6 catabolic process0.00E+00
16GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
17GO:0042821: pyridoxal biosynthetic process0.00E+00
18GO:0042407: cristae formation0.00E+00
19GO:0042817: pyridoxal metabolic process0.00E+00
20GO:0045038: protein import into chloroplast thylakoid membrane3.84E-06
21GO:0010207: photosystem II assembly9.94E-06
22GO:1903426: regulation of reactive oxygen species biosynthetic process1.13E-05
23GO:0032544: plastid translation4.05E-05
24GO:0006021: inositol biosynthetic process1.41E-04
25GO:0032543: mitochondrial translation2.17E-04
26GO:0015995: chlorophyll biosynthetic process3.04E-04
27GO:0009648: photoperiodism4.08E-04
28GO:0048511: rhythmic process4.21E-04
29GO:0000481: maturation of 5S rRNA5.06E-04
30GO:0006659: phosphatidylserine biosynthetic process5.06E-04
31GO:0042547: cell wall modification involved in multidimensional cell growth5.06E-04
32GO:0043686: co-translational protein modification5.06E-04
33GO:0043087: regulation of GTPase activity5.06E-04
34GO:2000021: regulation of ion homeostasis5.06E-04
35GO:0034337: RNA folding5.06E-04
36GO:0000476: maturation of 4.5S rRNA5.06E-04
37GO:0009443: pyridoxal 5'-phosphate salvage5.06E-04
38GO:0000967: rRNA 5'-end processing5.06E-04
39GO:0000012: single strand break repair5.06E-04
40GO:0043266: regulation of potassium ion transport5.06E-04
41GO:0009395: phospholipid catabolic process5.24E-04
42GO:2000070: regulation of response to water deprivation6.54E-04
43GO:0000105: histidine biosynthetic process6.54E-04
44GO:0010206: photosystem II repair9.51E-04
45GO:0090342: regulation of cell aging1.09E-03
46GO:1900033: negative regulation of trichome patterning1.09E-03
47GO:0034755: iron ion transmembrane transport1.09E-03
48GO:0006423: cysteinyl-tRNA aminoacylation1.09E-03
49GO:0006435: threonyl-tRNA aminoacylation1.09E-03
50GO:0006568: tryptophan metabolic process1.09E-03
51GO:0015804: neutral amino acid transport1.09E-03
52GO:0051262: protein tetramerization1.09E-03
53GO:0034470: ncRNA processing1.09E-03
54GO:0006739: NADP metabolic process1.09E-03
55GO:1900871: chloroplast mRNA modification1.09E-03
56GO:0030187: melatonin biosynthetic process1.09E-03
57GO:0006432: phenylalanyl-tRNA aminoacylation1.09E-03
58GO:0018026: peptidyl-lysine monomethylation1.09E-03
59GO:1900865: chloroplast RNA modification1.12E-03
60GO:0006782: protoporphyrinogen IX biosynthetic process1.31E-03
61GO:0006415: translational termination1.51E-03
62GO:0009684: indoleacetic acid biosynthetic process1.51E-03
63GO:0010027: thylakoid membrane organization1.66E-03
64GO:0016024: CDP-diacylglycerol biosynthetic process1.73E-03
65GO:0051604: protein maturation1.78E-03
66GO:0015940: pantothenate biosynthetic process1.78E-03
67GO:0001578: microtubule bundle formation1.78E-03
68GO:0045493: xylan catabolic process1.78E-03
69GO:0033591: response to L-ascorbic acid1.78E-03
70GO:0010589: leaf proximal/distal pattern formation1.78E-03
71GO:0009405: pathogenesis1.78E-03
72GO:0080055: low-affinity nitrate transport1.78E-03
73GO:2000012: regulation of auxin polar transport1.96E-03
74GO:0009658: chloroplast organization2.39E-03
75GO:0019853: L-ascorbic acid biosynthetic process2.49E-03
76GO:2001141: regulation of RNA biosynthetic process2.58E-03
77GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.58E-03
78GO:0010371: regulation of gibberellin biosynthetic process2.58E-03
79GO:0006166: purine ribonucleoside salvage2.58E-03
80GO:0009102: biotin biosynthetic process2.58E-03
81GO:0009647: skotomorphogenesis2.58E-03
82GO:0008615: pyridoxine biosynthetic process2.58E-03
83GO:0006424: glutamyl-tRNA aminoacylation2.58E-03
84GO:0046739: transport of virus in multicellular host2.58E-03
85GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.58E-03
86GO:0006168: adenine salvage2.58E-03
87GO:0000162: tryptophan biosynthetic process2.77E-03
88GO:0006418: tRNA aminoacylation for protein translation3.40E-03
89GO:0007020: microtubule nucleation3.48E-03
90GO:0048629: trichome patterning3.48E-03
91GO:0010109: regulation of photosynthesis3.48E-03
92GO:0051322: anaphase3.48E-03
93GO:0009765: photosynthesis, light harvesting3.48E-03
94GO:0035279: mRNA cleavage involved in gene silencing by miRNA3.48E-03
95GO:0022622: root system development3.48E-03
96GO:0006734: NADH metabolic process3.48E-03
97GO:0006413: translational initiation4.33E-03
98GO:0016120: carotene biosynthetic process4.46E-03
99GO:0010236: plastoquinone biosynthetic process4.46E-03
100GO:0031365: N-terminal protein amino acid modification4.46E-03
101GO:0016123: xanthophyll biosynthetic process4.46E-03
102GO:0044209: AMP salvage4.46E-03
103GO:0046785: microtubule polymerization4.46E-03
104GO:0032973: amino acid export5.53E-03
105GO:0046855: inositol phosphate dephosphorylation5.53E-03
106GO:0042549: photosystem II stabilization5.53E-03
107GO:0010264: myo-inositol hexakisphosphate biosynthetic process5.53E-03
108GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.53E-03
109GO:0006655: phosphatidylglycerol biosynthetic process5.53E-03
110GO:0048831: regulation of shoot system development5.53E-03
111GO:0010190: cytochrome b6f complex assembly5.53E-03
112GO:0016554: cytidine to uridine editing5.53E-03
113GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.53E-03
114GO:0009958: positive gravitropism6.15E-03
115GO:0030488: tRNA methylation6.67E-03
116GO:1901259: chloroplast rRNA processing6.67E-03
117GO:0010310: regulation of hydrogen peroxide metabolic process6.67E-03
118GO:0009955: adaxial/abaxial pattern specification6.67E-03
119GO:0042372: phylloquinone biosynthetic process6.67E-03
120GO:0048280: vesicle fusion with Golgi apparatus6.67E-03
121GO:0034389: lipid particle organization6.67E-03
122GO:0035196: production of miRNAs involved in gene silencing by miRNA7.90E-03
123GO:0032880: regulation of protein localization7.90E-03
124GO:0048528: post-embryonic root development7.90E-03
125GO:0043090: amino acid import7.90E-03
126GO:0016032: viral process8.13E-03
127GO:1901657: glycosyl compound metabolic process8.67E-03
128GO:0032508: DNA duplex unwinding9.20E-03
129GO:0006605: protein targeting9.20E-03
130GO:0010078: maintenance of root meristem identity9.20E-03
131GO:0043562: cellular response to nitrogen levels1.06E-02
132GO:0071482: cellular response to light stimulus1.06E-02
133GO:0022900: electron transport chain1.06E-02
134GO:0015996: chlorophyll catabolic process1.06E-02
135GO:0007186: G-protein coupled receptor signaling pathway1.06E-02
136GO:0009657: plastid organization1.06E-02
137GO:0009821: alkaloid biosynthetic process1.20E-02
138GO:0080144: amino acid homeostasis1.20E-02
139GO:0019432: triglyceride biosynthetic process1.20E-02
140GO:0006783: heme biosynthetic process1.20E-02
141GO:0009627: systemic acquired resistance1.24E-02
142GO:0071577: zinc II ion transmembrane transport1.35E-02
143GO:0010267: production of ta-siRNAs involved in RNA interference1.35E-02
144GO:0043067: regulation of programmed cell death1.35E-02
145GO:0006779: porphyrin-containing compound biosynthetic process1.35E-02
146GO:0016311: dephosphorylation1.37E-02
147GO:0045036: protein targeting to chloroplast1.51E-02
148GO:0006949: syncytium formation1.51E-02
149GO:0010629: negative regulation of gene expression1.51E-02
150GO:0006896: Golgi to vacuole transport1.51E-02
151GO:0015979: photosynthesis1.59E-02
152GO:0000272: polysaccharide catabolic process1.67E-02
153GO:0048527: lateral root development1.67E-02
154GO:0019684: photosynthesis, light reaction1.67E-02
155GO:0009089: lysine biosynthetic process via diaminopimelate1.67E-02
156GO:1903507: negative regulation of nucleic acid-templated transcription1.67E-02
157GO:0008285: negative regulation of cell proliferation1.67E-02
158GO:0006879: cellular iron ion homeostasis1.67E-02
159GO:0006352: DNA-templated transcription, initiation1.67E-02
160GO:0045037: protein import into chloroplast stroma1.84E-02
161GO:0006790: sulfur compound metabolic process1.84E-02
162GO:0045490: pectin catabolic process2.02E-02
163GO:0010588: cotyledon vascular tissue pattern formation2.02E-02
164GO:0009266: response to temperature stimulus2.20E-02
165GO:0006302: double-strand break repair2.20E-02
166GO:0048467: gynoecium development2.20E-02
167GO:0010143: cutin biosynthetic process2.20E-02
168GO:0006541: glutamine metabolic process2.20E-02
169GO:0016042: lipid catabolic process2.23E-02
170GO:0009640: photomorphogenesis2.37E-02
171GO:0046854: phosphatidylinositol phosphorylation2.38E-02
172GO:0071732: cellular response to nitric oxide2.38E-02
173GO:0007166: cell surface receptor signaling pathway2.39E-02
174GO:0006071: glycerol metabolic process2.58E-02
175GO:0006833: water transport2.58E-02
176GO:0042753: positive regulation of circadian rhythm2.58E-02
177GO:0007010: cytoskeleton organization2.77E-02
178GO:0006289: nucleotide-excision repair2.77E-02
179GO:0030150: protein import into mitochondrial matrix2.77E-02
180GO:0007017: microtubule-based process2.98E-02
181GO:0009664: plant-type cell wall organization2.98E-02
182GO:0010073: meristem maintenance2.98E-02
183GO:0043622: cortical microtubule organization2.98E-02
184GO:0003333: amino acid transmembrane transport3.18E-02
185GO:0016998: cell wall macromolecule catabolic process3.18E-02
186GO:0061077: chaperone-mediated protein folding3.18E-02
187GO:0051603: proteolysis involved in cellular protein catabolic process3.31E-02
188GO:0031348: negative regulation of defense response3.40E-02
189GO:0009814: defense response, incompatible interaction3.40E-02
190GO:0010017: red or far-red light signaling pathway3.40E-02
191GO:2000022: regulation of jasmonic acid mediated signaling pathway3.40E-02
192GO:0071369: cellular response to ethylene stimulus3.61E-02
193GO:0010227: floral organ abscission3.61E-02
194GO:0006012: galactose metabolic process3.61E-02
195GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.61E-02
196GO:0009306: protein secretion3.83E-02
197GO:0016117: carotenoid biosynthetic process4.06E-02
198GO:0008284: positive regulation of cell proliferation4.06E-02
199GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.06E-02
200GO:0042147: retrograde transport, endosome to Golgi4.06E-02
201GO:0034220: ion transmembrane transport4.29E-02
202GO:0000413: protein peptidyl-prolyl isomerization4.29E-02
203GO:0010087: phloem or xylem histogenesis4.29E-02
204GO:0000271: polysaccharide biosynthetic process4.29E-02
205GO:0080022: primary root development4.29E-02
206GO:0010305: leaf vascular tissue pattern formation4.53E-02
207GO:0010197: polar nucleus fusion4.53E-02
208GO:0010182: sugar mediated signaling pathway4.53E-02
209GO:0045489: pectin biosynthetic process4.53E-02
210GO:0006396: RNA processing4.67E-02
211GO:0007018: microtubule-based movement4.76E-02
212GO:0042752: regulation of circadian rhythm4.76E-02
213GO:0009646: response to absence of light4.76E-02
RankGO TermAdjusted P value
1GO:0004823: leucine-tRNA ligase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
4GO:0004822: isoleucine-tRNA ligase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
7GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
8GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
9GO:0004076: biotin synthase activity0.00E+00
10GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
11GO:0043136: glycerol-3-phosphatase activity0.00E+00
12GO:0000121: glycerol-1-phosphatase activity0.00E+00
13GO:0019144: ADP-sugar diphosphatase activity0.00E+00
14GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
15GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
16GO:0043864: indoleacetamide hydrolase activity0.00E+00
17GO:0010349: L-galactose dehydrogenase activity0.00E+00
18GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
19GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
20GO:0050613: delta14-sterol reductase activity0.00E+00
21GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
22GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
23GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
24GO:0005528: FK506 binding2.03E-05
25GO:0002161: aminoacyl-tRNA editing activity3.81E-05
26GO:0016851: magnesium chelatase activity8.16E-05
27GO:0016149: translation release factor activity, codon specific8.16E-05
28GO:0016788: hydrolase activity, acting on ester bonds1.30E-04
29GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.58E-04
30GO:0004040: amidase activity2.17E-04
31GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.06E-04
32GO:0008236: serine-type peptidase activity3.31E-04
33GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.06E-04
34GO:0004853: uroporphyrinogen decarboxylase activity5.06E-04
35GO:0042586: peptide deformylase activity5.06E-04
36GO:0052857: NADPHX epimerase activity5.06E-04
37GO:0052856: NADHX epimerase activity5.06E-04
38GO:0010347: L-galactose-1-phosphate phosphatase activity5.06E-04
39GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.06E-04
40GO:0005227: calcium activated cation channel activity5.06E-04
41GO:0004425: indole-3-glycerol-phosphate synthase activity5.06E-04
42GO:0004733: pyridoxamine-phosphate oxidase activity5.06E-04
43GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.06E-04
44GO:0004856: xylulokinase activity5.06E-04
45GO:0009496: plastoquinol--plastocyanin reductase activity5.06E-04
46GO:0080042: ADP-glucose pyrophosphohydrolase activity5.06E-04
47GO:0030570: pectate lyase activity5.31E-04
48GO:0003993: acid phosphatase activity5.60E-04
49GO:0004033: aldo-keto reductase (NADP) activity6.54E-04
50GO:0003747: translation release factor activity9.51E-04
51GO:0004512: inositol-3-phosphate synthase activity1.09E-03
52GO:0015172: acidic amino acid transmembrane transporter activity1.09E-03
53GO:0080041: ADP-ribose pyrophosphohydrolase activity1.09E-03
54GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.09E-03
55GO:0009977: proton motive force dependent protein transmembrane transporter activity1.09E-03
56GO:0052832: inositol monophosphate 3-phosphatase activity1.09E-03
57GO:0004817: cysteine-tRNA ligase activity1.09E-03
58GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.09E-03
59GO:0016630: protochlorophyllide reductase activity1.09E-03
60GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity1.09E-03
61GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity1.09E-03
62GO:0004829: threonine-tRNA ligase activity1.09E-03
63GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.09E-03
64GO:0008934: inositol monophosphate 1-phosphatase activity1.09E-03
65GO:0052833: inositol monophosphate 4-phosphatase activity1.09E-03
66GO:0004826: phenylalanine-tRNA ligase activity1.09E-03
67GO:0000049: tRNA binding1.73E-03
68GO:0030267: glyoxylate reductase (NADP) activity1.78E-03
69GO:0070402: NADPH binding1.78E-03
70GO:0004049: anthranilate synthase activity1.78E-03
71GO:0080054: low-affinity nitrate transmembrane transporter activity1.78E-03
72GO:0015462: ATPase-coupled protein transmembrane transporter activity1.78E-03
73GO:0005504: fatty acid binding1.78E-03
74GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.78E-03
75GO:0031072: heat shock protein binding1.96E-03
76GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.58E-03
77GO:0043023: ribosomal large subunit binding2.58E-03
78GO:0035198: miRNA binding2.58E-03
79GO:0019201: nucleotide kinase activity2.58E-03
80GO:0015175: neutral amino acid transmembrane transporter activity2.58E-03
81GO:0003999: adenine phosphoribosyltransferase activity2.58E-03
82GO:0016829: lyase activity3.32E-03
83GO:0046556: alpha-L-arabinofuranosidase activity3.48E-03
84GO:0016279: protein-lysine N-methyltransferase activity3.48E-03
85GO:0001053: plastid sigma factor activity3.48E-03
86GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.48E-03
87GO:0070628: proteasome binding3.48E-03
88GO:0004045: aminoacyl-tRNA hydrolase activity3.48E-03
89GO:0045430: chalcone isomerase activity3.48E-03
90GO:0016987: sigma factor activity3.48E-03
91GO:0009044: xylan 1,4-beta-xylosidase activity3.48E-03
92GO:0016846: carbon-sulfur lyase activity4.46E-03
93GO:0016773: phosphotransferase activity, alcohol group as acceptor4.46E-03
94GO:0035091: phosphatidylinositol binding4.83E-03
95GO:0008017: microtubule binding5.17E-03
96GO:0004812: aminoacyl-tRNA ligase activity5.27E-03
97GO:0102229: amylopectin maltohydrolase activity5.53E-03
98GO:0042578: phosphoric ester hydrolase activity5.53E-03
99GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.53E-03
100GO:0031593: polyubiquitin binding5.53E-03
101GO:0016208: AMP binding5.53E-03
102GO:0003743: translation initiation factor activity6.11E-03
103GO:0008080: N-acetyltransferase activity6.15E-03
104GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.67E-03
105GO:0005261: cation channel activity6.67E-03
106GO:0009927: histidine phosphotransfer kinase activity6.67E-03
107GO:0004017: adenylate kinase activity6.67E-03
108GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.67E-03
109GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.67E-03
110GO:0016832: aldehyde-lyase activity6.67E-03
111GO:0004144: diacylglycerol O-acyltransferase activity6.67E-03
112GO:0016161: beta-amylase activity6.67E-03
113GO:0043022: ribosome binding9.20E-03
114GO:0008173: RNA methyltransferase activity1.06E-02
115GO:0102483: scopolin beta-glucosidase activity1.30E-02
116GO:0016844: strictosidine synthase activity1.35E-02
117GO:0005381: iron ion transmembrane transporter activity1.35E-02
118GO:0052689: carboxylic ester hydrolase activity1.51E-02
119GO:0004252: serine-type endopeptidase activity1.53E-02
120GO:0005525: GTP binding1.61E-02
121GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.85E-02
122GO:0008422: beta-glucosidase activity2.01E-02
123GO:0015266: protein channel activity2.02E-02
124GO:0003725: double-stranded RNA binding2.02E-02
125GO:0008083: growth factor activity2.20E-02
126GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.20E-02
127GO:0004185: serine-type carboxypeptidase activity2.37E-02
128GO:0051537: 2 iron, 2 sulfur cluster binding2.57E-02
129GO:0003714: transcription corepressor activity2.77E-02
130GO:0005385: zinc ion transmembrane transporter activity2.77E-02
131GO:0043130: ubiquitin binding2.77E-02
132GO:0051087: chaperone binding2.98E-02
133GO:0008324: cation transmembrane transporter activity2.98E-02
134GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.40E-02
135GO:0003777: microtubule motor activity3.54E-02
136GO:0015171: amino acid transmembrane transporter activity3.54E-02
137GO:0003756: protein disulfide isomerase activity3.83E-02
138GO:0016491: oxidoreductase activity3.96E-02
139GO:0004527: exonuclease activity4.53E-02
140GO:0051082: unfolded protein binding4.54E-02
141GO:0003723: RNA binding4.63E-02
142GO:0010181: FMN binding4.76E-02
<
Gene type



Gene DE type