Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G18060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0033231: carbohydrate export0.00E+00
3GO:0033468: CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process0.00E+00
4GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0015717: triose phosphate transport0.00E+00
7GO:0009103: lipopolysaccharide biosynthetic process0.00E+00
8GO:0046471: phosphatidylglycerol metabolic process0.00E+00
9GO:1905157: positive regulation of photosynthesis0.00E+00
10GO:0006982: response to lipid hydroperoxide0.00E+00
11GO:0010335: response to non-ionic osmotic stress0.00E+00
12GO:0055114: oxidation-reduction process9.14E-08
13GO:0006094: gluconeogenesis9.86E-07
14GO:0015979: photosynthesis2.29E-06
15GO:0030388: fructose 1,6-bisphosphate metabolic process3.35E-06
16GO:0006000: fructose metabolic process1.21E-05
17GO:0019252: starch biosynthetic process1.77E-05
18GO:0009773: photosynthetic electron transport in photosystem I2.77E-05
19GO:0010600: regulation of auxin biosynthetic process4.90E-05
20GO:0010207: photosystem II assembly5.23E-05
21GO:0019253: reductive pentose-phosphate cycle5.23E-05
22GO:0015995: chlorophyll biosynthetic process5.89E-05
23GO:0006636: unsaturated fatty acid biosynthetic process7.44E-05
24GO:0009643: photosynthetic acclimation1.13E-04
25GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.56E-04
26GO:0009772: photosynthetic electron transport in photosystem II2.04E-04
27GO:0010928: regulation of auxin mediated signaling pathway2.58E-04
28GO:0009704: de-etiolation2.58E-04
29GO:0051180: vitamin transport2.70E-04
30GO:0015969: guanosine tetraphosphate metabolic process2.70E-04
31GO:0015755: fructose transport2.70E-04
32GO:0030974: thiamine pyrophosphate transport2.70E-04
33GO:0046467: membrane lipid biosynthetic process2.70E-04
34GO:0046900: tetrahydrofolylpolyglutamate metabolic process2.70E-04
35GO:1904966: positive regulation of vitamin E biosynthetic process2.70E-04
36GO:0043953: protein transport by the Tat complex2.70E-04
37GO:0010426: DNA methylation on cytosine within a CHH sequence2.70E-04
38GO:1904964: positive regulation of phytol biosynthetic process2.70E-04
39GO:0051775: response to redox state2.70E-04
40GO:0071277: cellular response to calcium ion2.70E-04
41GO:0042371: vitamin K biosynthetic process2.70E-04
42GO:0065002: intracellular protein transmembrane transport2.70E-04
43GO:0046167: glycerol-3-phosphate biosynthetic process2.70E-04
44GO:0043007: maintenance of rDNA2.70E-04
45GO:0019510: S-adenosylhomocysteine catabolic process2.70E-04
46GO:1902334: fructose export from vacuole to cytoplasm2.70E-04
47GO:0006002: fructose 6-phosphate metabolic process3.19E-04
48GO:0006754: ATP biosynthetic process3.84E-04
49GO:0009658: chloroplast organization4.56E-04
50GO:0042819: vitamin B6 biosynthetic process5.94E-04
51GO:0033353: S-adenosylmethionine cycle5.94E-04
52GO:1902326: positive regulation of chlorophyll biosynthetic process5.94E-04
53GO:0015893: drug transport5.94E-04
54GO:0006650: glycerophospholipid metabolic process5.94E-04
55GO:0008616: queuosine biosynthetic process5.94E-04
56GO:0005986: sucrose biosynthetic process7.96E-04
57GO:0046168: glycerol-3-phosphate catabolic process9.62E-04
58GO:0035436: triose phosphate transmembrane transport9.62E-04
59GO:0044375: regulation of peroxisome size9.62E-04
60GO:0034599: cellular response to oxidative stress1.02E-03
61GO:0032259: methylation1.22E-03
62GO:0008615: pyridoxine biosynthetic process1.38E-03
63GO:0006072: glycerol-3-phosphate metabolic process1.38E-03
64GO:0010731: protein glutathionylation1.38E-03
65GO:0042823: pyridoxal phosphate biosynthetic process1.38E-03
66GO:0006020: inositol metabolic process1.38E-03
67GO:0071484: cellular response to light intensity1.38E-03
68GO:0009152: purine ribonucleotide biosynthetic process1.38E-03
69GO:0046653: tetrahydrofolate metabolic process1.38E-03
70GO:0006107: oxaloacetate metabolic process1.38E-03
71GO:0045727: positive regulation of translation1.84E-03
72GO:0015994: chlorophyll metabolic process1.84E-03
73GO:0006546: glycine catabolic process1.84E-03
74GO:0006021: inositol biosynthetic process1.84E-03
75GO:0006734: NADH metabolic process1.84E-03
76GO:0015713: phosphoglycerate transport1.84E-03
77GO:0010021: amylopectin biosynthetic process1.84E-03
78GO:0009765: photosynthesis, light harvesting1.84E-03
79GO:0009585: red, far-red light phototransduction1.94E-03
80GO:0042631: cellular response to water deprivation2.24E-03
81GO:0006465: signal peptide processing2.35E-03
82GO:0009107: lipoate biosynthetic process2.35E-03
83GO:0016123: xanthophyll biosynthetic process2.35E-03
84GO:0006096: glycolytic process2.40E-03
85GO:0009646: response to absence of light2.60E-03
86GO:0046855: inositol phosphate dephosphorylation2.90E-03
87GO:0042549: photosystem II stabilization2.90E-03
88GO:0017148: negative regulation of translation3.49E-03
89GO:0010189: vitamin E biosynthetic process3.49E-03
90GO:0009854: oxidative photosynthetic carbon pathway3.49E-03
91GO:0010019: chloroplast-nucleus signaling pathway3.49E-03
92GO:0044550: secondary metabolite biosynthetic process3.52E-03
93GO:1900057: positive regulation of leaf senescence4.12E-03
94GO:0010161: red light signaling pathway4.12E-03
95GO:1900056: negative regulation of leaf senescence4.12E-03
96GO:0008610: lipid biosynthetic process4.77E-03
97GO:0005978: glycogen biosynthetic process4.77E-03
98GO:0042255: ribosome assembly4.77E-03
99GO:0006353: DNA-templated transcription, termination4.77E-03
100GO:0009231: riboflavin biosynthetic process4.77E-03
101GO:0016559: peroxisome fission4.77E-03
102GO:0009657: plastid organization5.47E-03
103GO:0032544: plastid translation5.47E-03
104GO:2000031: regulation of salicylic acid mediated signaling pathway5.47E-03
105GO:0009932: cell tip growth5.47E-03
106GO:0071482: cellular response to light stimulus5.47E-03
107GO:0007623: circadian rhythm6.08E-03
108GO:0010206: photosystem II repair6.20E-03
109GO:0006098: pentose-phosphate shunt6.20E-03
110GO:0090333: regulation of stomatal closure6.20E-03
111GO:0010267: production of ta-siRNAs involved in RNA interference6.96E-03
112GO:0009098: leucine biosynthetic process6.96E-03
113GO:0010380: regulation of chlorophyll biosynthetic process6.96E-03
114GO:0010205: photoinhibition6.96E-03
115GO:0009853: photorespiration7.11E-03
116GO:0006535: cysteine biosynthetic process from serine7.75E-03
117GO:0006995: cellular response to nitrogen starvation7.75E-03
118GO:0009688: abscisic acid biosynthetic process7.75E-03
119GO:0043069: negative regulation of programmed cell death7.75E-03
120GO:0006631: fatty acid metabolic process8.46E-03
121GO:0019684: photosynthesis, light reaction8.58E-03
122GO:0043085: positive regulation of catalytic activity8.58E-03
123GO:0000272: polysaccharide catabolic process8.58E-03
124GO:0009750: response to fructose8.58E-03
125GO:0018119: peptidyl-cysteine S-nitrosylation8.58E-03
126GO:0005975: carbohydrate metabolic process8.63E-03
127GO:0010114: response to red light9.18E-03
128GO:0009744: response to sucrose9.18E-03
129GO:0002213: defense response to insect9.44E-03
130GO:0016925: protein sumoylation9.44E-03
131GO:0006790: sulfur compound metabolic process9.44E-03
132GO:0009636: response to toxic substance1.03E-02
133GO:0006108: malate metabolic process1.03E-02
134GO:0006006: glucose metabolic process1.03E-02
135GO:0018107: peptidyl-threonine phosphorylation1.03E-02
136GO:0009725: response to hormone1.03E-02
137GO:0034605: cellular response to heat1.12E-02
138GO:0006541: glutamine metabolic process1.12E-02
139GO:0009735: response to cytokinin1.17E-02
140GO:0005985: sucrose metabolic process1.22E-02
141GO:0046854: phosphatidylinositol phosphorylation1.22E-02
142GO:0007031: peroxisome organization1.22E-02
143GO:0042742: defense response to bacterium1.24E-02
144GO:0009833: plant-type primary cell wall biogenesis1.32E-02
145GO:0019762: glucosinolate catabolic process1.32E-02
146GO:0006857: oligopeptide transport1.33E-02
147GO:0006406: mRNA export from nucleus1.42E-02
148GO:0019344: cysteine biosynthetic process1.42E-02
149GO:0043086: negative regulation of catalytic activity1.47E-02
150GO:0009695: jasmonic acid biosynthetic process1.52E-02
151GO:0019953: sexual reproduction1.52E-02
152GO:0061077: chaperone-mediated protein folding1.62E-02
153GO:0031408: oxylipin biosynthetic process1.62E-02
154GO:0006306: DNA methylation1.62E-02
155GO:0051260: protein homooligomerization1.62E-02
156GO:0010017: red or far-red light signaling pathway1.73E-02
157GO:2000022: regulation of jasmonic acid mediated signaling pathway1.73E-02
158GO:0030433: ubiquitin-dependent ERAD pathway1.73E-02
159GO:0006730: one-carbon metabolic process1.73E-02
160GO:0019748: secondary metabolic process1.73E-02
161GO:0030245: cellulose catabolic process1.73E-02
162GO:0006396: RNA processing1.82E-02
163GO:0009693: ethylene biosynthetic process1.84E-02
164GO:0006817: phosphate ion transport1.95E-02
165GO:0009306: protein secretion1.95E-02
166GO:0070417: cellular response to cold2.07E-02
167GO:0006606: protein import into nucleus2.19E-02
168GO:0016042: lipid catabolic process2.20E-02
169GO:0006520: cellular amino acid metabolic process2.31E-02
170GO:0006662: glycerol ether metabolic process2.31E-02
171GO:0010182: sugar mediated signaling pathway2.31E-02
172GO:0006810: transport2.39E-02
173GO:0015986: ATP synthesis coupled proton transport2.43E-02
174GO:0007059: chromosome segregation2.43E-02
175GO:0008654: phospholipid biosynthetic process2.55E-02
176GO:0000302: response to reactive oxygen species2.68E-02
177GO:0006633: fatty acid biosynthetic process2.79E-02
178GO:0031047: gene silencing by RNA2.81E-02
179GO:0032502: developmental process2.81E-02
180GO:0007264: small GTPase mediated signal transduction2.81E-02
181GO:0009567: double fertilization forming a zygote and endosperm3.07E-02
182GO:0051607: defense response to virus3.34E-02
183GO:0010027: thylakoid membrane organization3.48E-02
184GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.63E-02
185GO:0008380: RNA splicing3.65E-02
186GO:0042128: nitrate assimilation3.77E-02
187GO:0071555: cell wall organization3.80E-02
188GO:0010411: xyloglucan metabolic process3.91E-02
189GO:0030244: cellulose biosynthetic process4.21E-02
190GO:0018298: protein-chromophore linkage4.21E-02
191GO:0006499: N-terminal protein myristoylation4.51E-02
192GO:0009407: toxin catabolic process4.51E-02
193GO:0009910: negative regulation of flower development4.66E-02
194GO:0016051: carbohydrate biosynthetic process4.97E-02
RankGO TermAdjusted P value
1GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
2GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
3GO:0045550: geranylgeranyl reductase activity0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0008690: 3-deoxy-manno-octulosonate cytidylyltransferase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
8GO:0008465: glycerate dehydrogenase activity0.00E+00
9GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
12GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
13GO:0015284: fructose uniporter activity0.00E+00
14GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
15GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
16GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
17GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
18GO:0018708: thiol S-methyltransferase activity3.35E-06
19GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.35E-06
20GO:0004373: glycogen (starch) synthase activity1.21E-05
21GO:0051287: NAD binding2.18E-05
22GO:0009011: starch synthase activity4.90E-05
23GO:0004332: fructose-bisphosphate aldolase activity1.13E-04
24GO:0016491: oxidoreductase activity1.76E-04
25GO:0019899: enzyme binding2.04E-04
26GO:0080132: fatty acid alpha-hydroxylase activity2.70E-04
27GO:0008242: omega peptidase activity2.70E-04
28GO:0008746: NAD(P)+ transhydrogenase activity2.70E-04
29GO:0010313: phytochrome binding2.70E-04
30GO:0035671: enone reductase activity2.70E-04
31GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.70E-04
32GO:0046906: tetrapyrrole binding2.70E-04
33GO:0090422: thiamine pyrophosphate transporter activity2.70E-04
34GO:0004013: adenosylhomocysteinase activity2.70E-04
35GO:0071949: FAD binding3.84E-04
36GO:0008168: methyltransferase activity4.24E-04
37GO:0005353: fructose transmembrane transporter activity5.94E-04
38GO:0008934: inositol monophosphate 1-phosphatase activity5.94E-04
39GO:0034722: gamma-glutamyl-peptidase activity5.94E-04
40GO:0052833: inositol monophosphate 4-phosphatase activity5.94E-04
41GO:0008728: GTP diphosphokinase activity5.94E-04
42GO:0003862: 3-isopropylmalate dehydrogenase activity5.94E-04
43GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity5.94E-04
44GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.94E-04
45GO:0050017: L-3-cyanoalanine synthase activity5.94E-04
46GO:0010297: heteropolysaccharide binding5.94E-04
47GO:0009977: proton motive force dependent protein transmembrane transporter activity5.94E-04
48GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity5.94E-04
49GO:0004047: aminomethyltransferase activity5.94E-04
50GO:0052832: inositol monophosphate 3-phosphatase activity5.94E-04
51GO:0033201: alpha-1,4-glucan synthase activity5.94E-04
52GO:0008479: queuine tRNA-ribosyltransferase activity5.94E-04
53GO:0019843: rRNA binding7.10E-04
54GO:0004565: beta-galactosidase activity7.96E-04
55GO:0016992: lipoate synthase activity9.62E-04
56GO:0003935: GTP cyclohydrolase II activity9.62E-04
57GO:0016742: hydroxymethyl-, formyl- and related transferase activity9.62E-04
58GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity9.62E-04
59GO:0071917: triose-phosphate transmembrane transporter activity9.62E-04
60GO:0008864: formyltetrahydrofolate deformylase activity9.62E-04
61GO:0019948: SUMO activating enzyme activity9.62E-04
62GO:0010277: chlorophyllide a oxygenase [overall] activity9.62E-04
63GO:0048027: mRNA 5'-UTR binding1.38E-03
64GO:0022890: inorganic cation transmembrane transporter activity1.38E-03
65GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.38E-03
66GO:0016851: magnesium chelatase activity1.38E-03
67GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.38E-03
68GO:0042802: identical protein binding1.65E-03
69GO:0008878: glucose-1-phosphate adenylyltransferase activity1.84E-03
70GO:0043495: protein anchor1.84E-03
71GO:0015120: phosphoglycerate transmembrane transporter activity1.84E-03
72GO:0003727: single-stranded RNA binding1.92E-03
73GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.35E-03
74GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.35E-03
75GO:0004130: cytochrome-c peroxidase activity2.90E-03
76GO:0035673: oligopeptide transmembrane transporter activity2.90E-03
77GO:0042578: phosphoric ester hydrolase activity2.90E-03
78GO:0016615: malate dehydrogenase activity2.90E-03
79GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.49E-03
80GO:0030060: L-malate dehydrogenase activity3.49E-03
81GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.49E-03
82GO:0004124: cysteine synthase activity3.49E-03
83GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.47E-03
84GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.20E-03
85GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.96E-03
86GO:0030234: enzyme regulator activity7.75E-03
87GO:0015386: potassium:proton antiporter activity8.58E-03
88GO:0004364: glutathione transferase activity8.81E-03
89GO:0015198: oligopeptide transporter activity9.44E-03
90GO:0051537: 2 iron, 2 sulfur cluster binding9.94E-03
91GO:0005315: inorganic phosphate transmembrane transporter activity1.03E-02
92GO:0031072: heat shock protein binding1.03E-02
93GO:0008266: poly(U) RNA binding1.12E-02
94GO:0051119: sugar transmembrane transporter activity1.22E-02
95GO:0003690: double-stranded DNA binding1.28E-02
96GO:0016298: lipase activity1.28E-02
97GO:0005528: FK506 binding1.42E-02
98GO:0015079: potassium ion transmembrane transporter activity1.52E-02
99GO:0016779: nucleotidyltransferase activity1.73E-02
100GO:0008810: cellulase activity1.84E-02
101GO:0016760: cellulose synthase (UDP-forming) activity1.84E-02
102GO:0022891: substrate-specific transmembrane transporter activity1.84E-02
103GO:0047134: protein-disulfide reductase activity2.07E-02
104GO:0005507: copper ion binding2.27E-02
105GO:0005515: protein binding2.30E-02
106GO:0008080: N-acetyltransferase activity2.31E-02
107GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.31E-02
108GO:0050662: coenzyme binding2.43E-02
109GO:0015299: solute:proton antiporter activity2.43E-02
110GO:0004791: thioredoxin-disulfide reductase activity2.43E-02
111GO:0030170: pyridoxal phosphate binding2.46E-02
112GO:0004872: receptor activity2.55E-02
113GO:0008565: protein transporter activity2.66E-02
114GO:0016762: xyloglucan:xyloglucosyl transferase activity2.68E-02
115GO:0004518: nuclease activity2.81E-02
116GO:0005525: GTP binding2.81E-02
117GO:0046910: pectinesterase inhibitor activity2.85E-02
118GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.94E-02
119GO:0016759: cellulose synthase activity3.07E-02
120GO:0008483: transaminase activity3.21E-02
121GO:0016722: oxidoreductase activity, oxidizing metal ions3.21E-02
122GO:0016168: chlorophyll binding3.63E-02
123GO:0005506: iron ion binding3.72E-02
124GO:0016798: hydrolase activity, acting on glycosyl bonds3.91E-02
125GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.06E-02
126GO:0003824: catalytic activity4.35E-02
127GO:0003746: translation elongation factor activity4.97E-02
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Gene type



Gene DE type