Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G16340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045014: negative regulation of transcription by glucose0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0090627: plant epidermal cell differentiation0.00E+00
5GO:0009606: tropism0.00E+00
6GO:0090322: regulation of superoxide metabolic process0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0035884: arabinan biosynthetic process0.00E+00
9GO:0045184: establishment of protein localization0.00E+00
10GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
11GO:0031222: arabinan catabolic process0.00E+00
12GO:0009451: RNA modification4.77E-08
13GO:0042793: transcription from plastid promoter8.31E-08
14GO:0010569: regulation of double-strand break repair via homologous recombination1.30E-05
15GO:0009658: chloroplast organization2.78E-05
16GO:0006518: peptide metabolic process4.36E-05
17GO:0009657: plastid organization4.85E-05
18GO:0046739: transport of virus in multicellular host9.29E-05
19GO:0009828: plant-type cell wall loosening2.07E-04
20GO:0009913: epidermal cell differentiation3.43E-04
21GO:0009734: auxin-activated signaling pathway4.43E-04
22GO:0006458: 'de novo' protein folding4.58E-04
23GO:0042026: protein refolding4.58E-04
24GO:0042659: regulation of cell fate specification5.46E-04
25GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.46E-04
26GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.46E-04
27GO:1905039: carboxylic acid transmembrane transport5.46E-04
28GO:1905200: gibberellic acid transmembrane transport5.46E-04
29GO:0070509: calcium ion import5.46E-04
30GO:0080112: seed growth5.46E-04
31GO:0030198: extracellular matrix organization5.46E-04
32GO:0090558: plant epidermis development5.46E-04
33GO:0010063: positive regulation of trichoblast fate specification5.46E-04
34GO:1903866: palisade mesophyll development5.46E-04
35GO:0042371: vitamin K biosynthetic process5.46E-04
36GO:0035987: endodermal cell differentiation5.46E-04
37GO:0006436: tryptophanyl-tRNA aminoacylation5.46E-04
38GO:0015904: tetracycline transport5.46E-04
39GO:0034757: negative regulation of iron ion transport5.46E-04
40GO:0009733: response to auxin7.33E-04
41GO:0010497: plasmodesmata-mediated intercellular transport8.88E-04
42GO:0007389: pattern specification process8.88E-04
43GO:0000373: Group II intron splicing1.06E-03
44GO:0009967: positive regulation of signal transduction1.17E-03
45GO:0060359: response to ammonium ion1.17E-03
46GO:0048255: mRNA stabilization1.17E-03
47GO:1902326: positive regulation of chlorophyll biosynthetic process1.17E-03
48GO:0010271: regulation of chlorophyll catabolic process1.17E-03
49GO:0018026: peptidyl-lysine monomethylation1.17E-03
50GO:0009662: etioplast organization1.17E-03
51GO:1900033: negative regulation of trichome patterning1.17E-03
52GO:0042325: regulation of phosphorylation1.17E-03
53GO:1904143: positive regulation of carotenoid biosynthetic process1.17E-03
54GO:0080009: mRNA methylation1.17E-03
55GO:2000123: positive regulation of stomatal complex development1.17E-03
56GO:0006420: arginyl-tRNA aminoacylation1.17E-03
57GO:0010583: response to cyclopentenone1.30E-03
58GO:0009664: plant-type cell wall organization1.30E-03
59GO:0006535: cysteine biosynthetic process from serine1.46E-03
60GO:0006949: syncytium formation1.46E-03
61GO:0010027: thylakoid membrane organization1.92E-03
62GO:0090708: specification of plant organ axis polarity1.93E-03
63GO:0080117: secondary growth1.93E-03
64GO:0090391: granum assembly1.93E-03
65GO:0042780: tRNA 3'-end processing1.93E-03
66GO:0001578: microtubule bundle formation1.93E-03
67GO:0043157: response to cation stress1.93E-03
68GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.93E-03
69GO:0045037: protein import into chloroplast stroma1.94E-03
70GO:0010588: cotyledon vascular tissue pattern formation2.20E-03
71GO:0010102: lateral root morphogenesis2.20E-03
72GO:0009416: response to light stimulus2.48E-03
73GO:0048481: plant ovule development2.70E-03
74GO:0080188: RNA-directed DNA methylation2.79E-03
75GO:0051289: protein homotetramerization2.80E-03
76GO:0016556: mRNA modification2.80E-03
77GO:0010371: regulation of gibberellin biosynthetic process2.80E-03
78GO:1902476: chloride transmembrane transport2.80E-03
79GO:0010071: root meristem specification2.80E-03
80GO:0010239: chloroplast mRNA processing2.80E-03
81GO:0019344: cysteine biosynthetic process3.45E-03
82GO:0030104: water homeostasis3.76E-03
83GO:0006221: pyrimidine nucleotide biosynthetic process3.76E-03
84GO:2000038: regulation of stomatal complex development3.76E-03
85GO:0006021: inositol biosynthetic process3.76E-03
86GO:0006479: protein methylation3.76E-03
87GO:0048629: trichome patterning3.76E-03
88GO:0042274: ribosomal small subunit biogenesis3.76E-03
89GO:0051322: anaphase3.76E-03
90GO:0061077: chaperone-mediated protein folding4.19E-03
91GO:0016998: cell wall macromolecule catabolic process4.19E-03
92GO:0009790: embryo development4.45E-03
93GO:0010375: stomatal complex patterning4.83E-03
94GO:0010236: plastoquinone biosynthetic process4.83E-03
95GO:0048497: maintenance of floral organ identity4.83E-03
96GO:0009107: lipoate biosynthetic process4.83E-03
97GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.01E-03
98GO:0071215: cellular response to abscisic acid stimulus5.01E-03
99GO:0009793: embryo development ending in seed dormancy5.37E-03
100GO:0006655: phosphatidylglycerol biosynthetic process5.99E-03
101GO:0016554: cytidine to uridine editing5.99E-03
102GO:1902456: regulation of stomatal opening5.99E-03
103GO:0048831: regulation of shoot system development5.99E-03
104GO:0010315: auxin efflux5.99E-03
105GO:0009643: photosynthetic acclimation5.99E-03
106GO:0006014: D-ribose metabolic process5.99E-03
107GO:0050665: hydrogen peroxide biosynthetic process5.99E-03
108GO:0009959: negative gravitropism5.99E-03
109GO:0010087: phloem or xylem histogenesis6.40E-03
110GO:0009739: response to gibberellin6.82E-03
111GO:0010305: leaf vascular tissue pattern formation6.90E-03
112GO:0042372: phylloquinone biosynthetic process7.24E-03
113GO:0009942: longitudinal axis specification7.24E-03
114GO:0048509: regulation of meristem development7.24E-03
115GO:1901259: chloroplast rRNA processing7.24E-03
116GO:0009854: oxidative photosynthetic carbon pathway7.24E-03
117GO:0010310: regulation of hydrogen peroxide metabolic process7.24E-03
118GO:2000067: regulation of root morphogenesis7.24E-03
119GO:0009955: adaxial/abaxial pattern specification7.24E-03
120GO:0048825: cotyledon development7.97E-03
121GO:0006821: chloride transport8.57E-03
122GO:0048437: floral organ development8.57E-03
123GO:0015937: coenzyme A biosynthetic process8.57E-03
124GO:0010103: stomatal complex morphogenesis8.57E-03
125GO:0006955: immune response8.57E-03
126GO:0048528: post-embryonic root development8.57E-03
127GO:0007050: cell cycle arrest8.57E-03
128GO:0009772: photosynthetic electron transport in photosystem II8.57E-03
129GO:0009630: gravitropism9.13E-03
130GO:0048367: shoot system development9.57E-03
131GO:0001522: pseudouridine synthesis9.98E-03
132GO:0009642: response to light intensity9.98E-03
133GO:0046620: regulation of organ growth9.98E-03
134GO:0006353: DNA-templated transcription, termination9.98E-03
135GO:0048766: root hair initiation9.98E-03
136GO:0055075: potassium ion homeostasis9.98E-03
137GO:0000105: histidine biosynthetic process9.98E-03
138GO:0052543: callose deposition in cell wall9.98E-03
139GO:0048564: photosystem I assembly9.98E-03
140GO:0010252: auxin homeostasis1.04E-02
141GO:0009826: unidimensional cell growth1.06E-02
142GO:0019430: removal of superoxide radicals1.15E-02
143GO:0010204: defense response signaling pathway, resistance gene-independent1.15E-02
144GO:0032544: plastid translation1.15E-02
145GO:0001666: response to hypoxia1.24E-02
146GO:0006457: protein folding1.27E-02
147GO:0006098: pentose-phosphate shunt1.30E-02
148GO:0048589: developmental growth1.30E-02
149GO:0000902: cell morphogenesis1.30E-02
150GO:0010411: xyloglucan metabolic process1.46E-02
151GO:0042761: very long-chain fatty acid biosynthetic process1.47E-02
152GO:2000280: regulation of root development1.47E-02
153GO:1900865: chloroplast RNA modification1.47E-02
154GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.63E-02
155GO:0048829: root cap development1.64E-02
156GO:0045036: protein targeting to chloroplast1.64E-02
157GO:0006259: DNA metabolic process1.64E-02
158GO:0009845: seed germination1.71E-02
159GO:0000160: phosphorelay signal transduction system1.71E-02
160GO:0006265: DNA topological change1.82E-02
161GO:0015770: sucrose transport1.82E-02
162GO:0009750: response to fructose1.82E-02
163GO:0006865: amino acid transport1.97E-02
164GO:0010152: pollen maturation2.00E-02
165GO:0016024: CDP-diacylglycerol biosynthetic process2.00E-02
166GO:0006790: sulfur compound metabolic process2.00E-02
167GO:0030048: actin filament-based movement2.19E-02
168GO:0009691: cytokinin biosynthetic process2.19E-02
169GO:0006094: gluconeogenesis2.19E-02
170GO:0010207: photosystem II assembly2.39E-02
171GO:0009901: anther dehiscence2.59E-02
172GO:0070588: calcium ion transmembrane transport2.59E-02
173GO:0046854: phosphatidylinositol phosphorylation2.59E-02
174GO:0010114: response to red light2.66E-02
175GO:0009926: auxin polar transport2.66E-02
176GO:0042546: cell wall biogenesis2.77E-02
177GO:0006833: water transport2.80E-02
178GO:0080147: root hair cell development3.01E-02
179GO:0000027: ribosomal large subunit assembly3.01E-02
180GO:0006418: tRNA aminoacylation for protein translation3.23E-02
181GO:0010073: meristem maintenance3.23E-02
182GO:0051302: regulation of cell division3.23E-02
183GO:0019953: sexual reproduction3.23E-02
184GO:0031408: oxylipin biosynthetic process3.46E-02
185GO:0003333: amino acid transmembrane transport3.46E-02
186GO:0015992: proton transport3.46E-02
187GO:0010431: seed maturation3.46E-02
188GO:0009736: cytokinin-activated signaling pathway3.59E-02
189GO:0006364: rRNA processing3.59E-02
190GO:0016226: iron-sulfur cluster assembly3.69E-02
191GO:0006730: one-carbon metabolic process3.69E-02
192GO:0007005: mitochondrion organization3.69E-02
193GO:0019748: secondary metabolic process3.69E-02
194GO:0010082: regulation of root meristem growth3.92E-02
195GO:0048443: stamen development4.17E-02
196GO:0042127: regulation of cell proliferation4.17E-02
197GO:0070417: cellular response to cold4.41E-02
198GO:0000226: microtubule cytoskeleton organization4.66E-02
199GO:0080022: primary root development4.66E-02
200GO:0008033: tRNA processing4.66E-02
201GO:0000413: protein peptidyl-prolyl isomerization4.66E-02
202GO:0010118: stomatal movement4.66E-02
203GO:0009958: positive gravitropism4.91E-02
204GO:0006662: glycerol ether metabolic process4.91E-02
205GO:0048868: pollen tube development4.91E-02
206GO:0009741: response to brassinosteroid4.91E-02
207GO:0009553: embryo sac development4.94E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
3GO:0004401: histidinol-phosphatase activity0.00E+00
4GO:0016018: cyclosporin A binding0.00E+00
5GO:0070009: serine-type aminopeptidase activity0.00E+00
6GO:0052834: inositol monophosphate phosphatase activity0.00E+00
7GO:0005201: extracellular matrix structural constituent0.00E+00
8GO:0004519: endonuclease activity1.11E-08
9GO:0003723: RNA binding3.28E-08
10GO:0016773: phosphotransferase activity, alcohol group as acceptor2.44E-04
11GO:0004124: cysteine synthase activity4.58E-04
12GO:0004222: metalloendopeptidase activity5.03E-04
13GO:0004632: phosphopantothenate--cysteine ligase activity5.46E-04
14GO:0042834: peptidoglycan binding5.46E-04
15GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.46E-04
16GO:0016274: protein-arginine N-methyltransferase activity5.46E-04
17GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity5.46E-04
18GO:0052381: tRNA dimethylallyltransferase activity5.46E-04
19GO:0004830: tryptophan-tRNA ligase activity5.46E-04
20GO:0010347: L-galactose-1-phosphate phosphatase activity5.46E-04
21GO:0004016: adenylate cyclase activity5.46E-04
22GO:1905201: gibberellin transmembrane transporter activity5.46E-04
23GO:0019843: rRNA binding7.68E-04
24GO:0008173: RNA methyltransferase activity8.88E-04
25GO:0000774: adenyl-nucleotide exchange factor activity1.17E-03
26GO:0008805: carbon-monoxide oxygenase activity1.17E-03
27GO:0008934: inositol monophosphate 1-phosphatase activity1.17E-03
28GO:0008493: tetracycline transporter activity1.17E-03
29GO:0052833: inositol monophosphate 4-phosphatase activity1.17E-03
30GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.17E-03
31GO:0005078: MAP-kinase scaffold activity1.17E-03
32GO:0003988: acetyl-CoA C-acyltransferase activity1.17E-03
33GO:0009884: cytokinin receptor activity1.17E-03
34GO:0017118: lipoyltransferase activity1.17E-03
35GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.17E-03
36GO:0004814: arginine-tRNA ligase activity1.17E-03
37GO:0016415: octanoyltransferase activity1.17E-03
38GO:0004047: aminomethyltransferase activity1.17E-03
39GO:0052832: inositol monophosphate 3-phosphatase activity1.17E-03
40GO:0009672: auxin:proton symporter activity1.25E-03
41GO:0044183: protein binding involved in protein folding1.69E-03
42GO:0017150: tRNA dihydrouridine synthase activity1.93E-03
43GO:0042781: 3'-tRNA processing endoribonuclease activity1.93E-03
44GO:0016805: dipeptidase activity1.93E-03
45GO:0005034: osmosensor activity1.93E-03
46GO:0010329: auxin efflux transmembrane transporter activity2.20E-03
47GO:0051082: unfolded protein binding2.49E-03
48GO:0009678: hydrogen-translocating pyrophosphatase activity2.80E-03
49GO:0009041: uridylate kinase activity2.80E-03
50GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.80E-03
51GO:0008508: bile acid:sodium symporter activity2.80E-03
52GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.80E-03
53GO:0001872: (1->3)-beta-D-glucan binding2.80E-03
54GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.80E-03
55GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.65E-03
56GO:0005253: anion channel activity3.76E-03
57GO:0004930: G-protein coupled receptor activity3.76E-03
58GO:0008891: glycolate oxidase activity3.76E-03
59GO:0046556: alpha-L-arabinofuranosidase activity3.76E-03
60GO:0004659: prenyltransferase activity3.76E-03
61GO:0016279: protein-lysine N-methyltransferase activity3.76E-03
62GO:0010011: auxin binding3.76E-03
63GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.28E-03
64GO:0004888: transmembrane signaling receptor activity4.83E-03
65GO:0005275: amine transmembrane transporter activity4.83E-03
66GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.83E-03
67GO:0030570: pectate lyase activity5.01E-03
68GO:0004784: superoxide dismutase activity5.99E-03
69GO:0005247: voltage-gated chloride channel activity5.99E-03
70GO:0004605: phosphatidate cytidylyltransferase activity5.99E-03
71GO:0004332: fructose-bisphosphate aldolase activity5.99E-03
72GO:0001085: RNA polymerase II transcription factor binding6.90E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity7.24E-03
74GO:0004747: ribokinase activity7.24E-03
75GO:0019900: kinase binding7.24E-03
76GO:0008195: phosphatidate phosphatase activity7.24E-03
77GO:0016762: xyloglucan:xyloglucosyl transferase activity8.54E-03
78GO:0004427: inorganic diphosphatase activity8.57E-03
79GO:0008865: fructokinase activity9.98E-03
80GO:0008237: metallopeptidase activity1.10E-02
81GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.15E-02
82GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.32E-02
83GO:0016798: hydrolase activity, acting on glycosyl bonds1.46E-02
84GO:0004673: protein histidine kinase activity1.64E-02
85GO:0008515: sucrose transmembrane transporter activity1.82E-02
86GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.88E-02
87GO:0000049: tRNA binding2.00E-02
88GO:0046872: metal ion binding2.15E-02
89GO:0003993: acid phosphatase activity2.16E-02
90GO:0003725: double-stranded RNA binding2.19E-02
91GO:0004022: alcohol dehydrogenase (NAD) activity2.19E-02
92GO:0031072: heat shock protein binding2.19E-02
93GO:0000155: phosphorelay sensor kinase activity2.19E-02
94GO:0005262: calcium channel activity2.19E-02
95GO:0019888: protein phosphatase regulator activity2.19E-02
96GO:0009982: pseudouridine synthase activity2.19E-02
97GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.39E-02
98GO:0003774: motor activity2.39E-02
99GO:0051119: sugar transmembrane transporter activity2.59E-02
100GO:0043424: protein histidine kinase binding3.23E-02
101GO:0051087: chaperone binding3.23E-02
102GO:0004707: MAP kinase activity3.46E-02
103GO:0004176: ATP-dependent peptidase activity3.46E-02
104GO:0008408: 3'-5' exonuclease activity3.46E-02
105GO:0005215: transporter activity3.56E-02
106GO:0003690: double-stranded DNA binding3.71E-02
107GO:0008168: methyltransferase activity3.83E-02
108GO:0003777: microtubule motor activity3.97E-02
109GO:0015171: amino acid transmembrane transporter activity3.97E-02
110GO:0047134: protein-disulfide reductase activity4.41E-02
111GO:0004812: aminoacyl-tRNA ligase activity4.41E-02
112GO:0004527: exonuclease activity4.91E-02
113GO:0003713: transcription coactivator activity4.91E-02
114GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity4.91E-02
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Gene type



Gene DE type