co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G16080

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034337: RNA folding	0.00E+00
2	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
3	GO:0006982: response to lipid hydroperoxide	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0010335: response to non-ionic osmotic stress	0.00E+00
6	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
9	GO:0005996: monosaccharide metabolic process	0.00E+00
10	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
11	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
12	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
13	GO:0015979: photosynthesis	2.42E-20
14	GO:0015995: chlorophyll biosynthetic process	5.55E-16
15	GO:0032544: plastid translation	5.45E-11
16	GO:0009735: response to cytokinin	3.11E-08
17	GO:0018298: protein-chromophore linkage	7.61E-08
18	GO:0009658: chloroplast organization	1.19E-07
19	GO:0010207: photosystem II assembly	1.87E-07
20	GO:0009768: photosynthesis, light harvesting in photosystem I	6.54E-07
21	GO:0010021: amylopectin biosynthetic process	1.42E-06
22	GO:0055114: oxidation-reduction process	3.04E-06
23	GO:0009773: photosynthetic electron transport in photosystem I	3.21E-06
24	GO:0019252: starch biosynthetic process	4.98E-06
25	GO:0030388: fructose 1,6-bisphosphate metabolic process	9.75E-06
26	GO:1902326: positive regulation of chlorophyll biosynthetic process	9.75E-06
27	GO:0006000: fructose metabolic process	3.33E-05
28	GO:0071482: cellular response to light stimulus	3.39E-05
29	GO:0006783: heme biosynthetic process	4.63E-05
30	GO:2001141: regulation of RNA biosynthetic process	7.17E-05
31	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.17E-05
32	GO:0006810: transport	7.99E-05
33	GO:0045727: positive regulation of translation	1.25E-04
34	GO:0015994: chlorophyll metabolic process	1.25E-04
35	GO:0010600: regulation of auxin biosynthetic process	1.25E-04
36	GO:0006094: gluconeogenesis	1.47E-04
37	GO:0006412: translation	1.68E-04
38	GO:0019253: reductive pentose-phosphate cycle	1.76E-04
39	GO:0010027: thylakoid membrane organization	1.91E-04
40	GO:0006636: unsaturated fatty acid biosynthetic process	2.42E-04
41	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.65E-04
42	GO:0009854: oxidative photosynthetic carbon pathway	3.65E-04
43	GO:0046467: membrane lipid biosynthetic process	4.70E-04
44	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	4.70E-04
45	GO:0043489: RNA stabilization	4.70E-04
46	GO:0009645: response to low light intensity stimulus	4.70E-04
47	GO:0010196: nonphotochemical quenching	4.70E-04
48	GO:0043953: protein transport by the Tat complex	4.70E-04
49	GO:0000481: maturation of 5S rRNA	4.70E-04
50	GO:0010426: DNA methylation on cytosine within a CHH sequence	4.70E-04
51	GO:0065002: intracellular protein transmembrane transport	4.70E-04
52	GO:0043686: co-translational protein modification	4.70E-04
53	GO:0043087: regulation of GTPase activity	4.70E-04
54	GO:0051775: response to redox state	4.70E-04
55	GO:0071461: cellular response to redox state	4.70E-04
56	GO:0071277: cellular response to calcium ion	4.70E-04
57	GO:0080093: regulation of photorespiration	4.70E-04
58	GO:0031998: regulation of fatty acid beta-oxidation	4.70E-04
59	GO:0034599: cellular response to oxidative stress	4.71E-04
60	GO:0048564: photosystem I assembly	5.86E-04
61	GO:0010928: regulation of auxin mediated signaling pathway	5.86E-04
62	GO:0009704: de-etiolation	5.86E-04
63	GO:0010114: response to red light	6.53E-04
64	GO:0006002: fructose 6-phosphate metabolic process	7.14E-04
65	GO:0006779: porphyrin-containing compound biosynthetic process	1.01E-03
66	GO:0080005: photosystem stoichiometry adjustment	1.01E-03
67	GO:0042819: vitamin B6 biosynthetic process	1.01E-03
68	GO:0008616: queuosine biosynthetic process	1.01E-03
69	GO:0006729: tetrahydrobiopterin biosynthetic process	1.01E-03
70	GO:0006782: protoporphyrinogen IX biosynthetic process	1.17E-03
71	GO:0006352: DNA-templated transcription, initiation	1.35E-03
72	GO:0018119: peptidyl-cysteine S-nitrosylation	1.35E-03
73	GO:0032259: methylation	1.44E-03
74	GO:0090391: granum assembly	1.65E-03
75	GO:0006518: peptide metabolic process	1.65E-03
76	GO:0034051: negative regulation of plant-type hypersensitive response	1.65E-03
77	GO:0044375: regulation of peroxisome size	1.65E-03
78	GO:0005977: glycogen metabolic process	1.65E-03
79	GO:0009767: photosynthetic electron transport chain	1.76E-03
80	GO:0005986: sucrose biosynthetic process	1.76E-03
81	GO:0006108: malate metabolic process	1.76E-03
82	GO:0010218: response to far red light	2.29E-03
83	GO:0006020: inositol metabolic process	2.39E-03
84	GO:0071484: cellular response to light intensity	2.39E-03
85	GO:0009152: purine ribonucleotide biosynthetic process	2.39E-03
86	GO:0046653: tetrahydrofolate metabolic process	2.39E-03
87	GO:0006107: oxaloacetate metabolic process	2.39E-03
88	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.39E-03
89	GO:0033014: tetrapyrrole biosynthetic process	2.39E-03
90	GO:0008615: pyridoxine biosynthetic process	2.39E-03
91	GO:0010731: protein glutathionylation	2.39E-03
92	GO:1901332: negative regulation of lateral root development	2.39E-03
93	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.39E-03
94	GO:0042823: pyridoxal phosphate biosynthetic process	2.39E-03
95	GO:0042742: defense response to bacterium	2.44E-03
96	GO:0019762: glucosinolate catabolic process	2.48E-03
97	GO:0009853: photorespiration	2.73E-03
98	GO:0009637: response to blue light	2.73E-03
99	GO:0015976: carbon utilization	3.22E-03
100	GO:0009765: photosynthesis, light harvesting	3.22E-03
101	GO:0006109: regulation of carbohydrate metabolic process	3.22E-03
102	GO:0006536: glutamate metabolic process	3.22E-03
103	GO:0006546: glycine catabolic process	3.22E-03
104	GO:0006021: inositol biosynthetic process	3.22E-03
105	GO:0006734: NADH metabolic process	3.22E-03
106	GO:0031408: oxylipin biosynthetic process	3.34E-03
107	GO:0019748: secondary metabolic process	3.66E-03
108	GO:0000304: response to singlet oxygen	4.13E-03
109	GO:0006564: L-serine biosynthetic process	4.13E-03
110	GO:0006656: phosphatidylcholine biosynthetic process	4.13E-03
111	GO:0043097: pyrimidine nucleoside salvage	4.13E-03
112	GO:0031365: N-terminal protein amino acid modification	4.13E-03
113	GO:0006097: glyoxylate cycle	4.13E-03
114	GO:0009107: lipoate biosynthetic process	4.13E-03
115	GO:0009409: response to cold	5.01E-03
116	GO:0042631: cellular response to water deprivation	5.09E-03
117	GO:0042549: photosystem II stabilization	5.11E-03
118	GO:0006796: phosphate-containing compound metabolic process	5.11E-03
119	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.11E-03
120	GO:0006206: pyrimidine nucleobase metabolic process	5.11E-03
121	GO:0050665: hydrogen peroxide biosynthetic process	5.11E-03
122	GO:0046855: inositol phosphate dephosphorylation	5.11E-03
123	GO:0006520: cellular amino acid metabolic process	5.49E-03
124	GO:0006662: glycerol ether metabolic process	5.49E-03
125	GO:0006364: rRNA processing	5.54E-03
126	GO:0010189: vitamin E biosynthetic process	6.17E-03
127	GO:1901259: chloroplast rRNA processing	6.17E-03
128	GO:0005975: carbohydrate metabolic process	6.56E-03
129	GO:0009772: photosynthetic electron transport in photosystem II	7.30E-03
130	GO:1900057: positive regulation of leaf senescence	7.30E-03
131	GO:0010161: red light signaling pathway	7.30E-03
132	GO:0042254: ribosome biogenesis	8.13E-03
133	GO:0016559: peroxisome fission	8.49E-03
134	GO:0005978: glycogen biosynthetic process	8.49E-03
135	GO:0009642: response to light intensity	8.49E-03
136	GO:0032508: DNA duplex unwinding	8.49E-03
137	GO:0042255: ribosome assembly	8.49E-03
138	GO:0006353: DNA-templated transcription, termination	8.49E-03
139	GO:0006526: arginine biosynthetic process	9.75E-03
140	GO:0009657: plastid organization	9.75E-03
141	GO:0010206: photosystem II repair	1.11E-02
142	GO:0090333: regulation of stomatal closure	1.11E-02
143	GO:0006754: ATP biosynthetic process	1.11E-02
144	GO:0010205: photoinhibition	1.25E-02
145	GO:0005982: starch metabolic process	1.25E-02
146	GO:0009817: defense response to fungus, incompatible interaction	1.29E-02
147	GO:0006535: cysteine biosynthetic process from serine	1.39E-02
148	GO:0043069: negative regulation of programmed cell death	1.39E-02
149	GO:0019684: photosynthesis, light reaction	1.54E-02
150	GO:0043085: positive regulation of catalytic activity	1.54E-02
151	GO:0000272: polysaccharide catabolic process	1.54E-02
152	GO:0006633: fatty acid biosynthetic process	1.55E-02
153	GO:0006790: sulfur compound metabolic process	1.70E-02
154	GO:0006099: tricarboxylic acid cycle	1.71E-02
155	GO:0009725: response to hormone	1.86E-02
156	GO:0006807: nitrogen compound metabolic process	1.86E-02
157	GO:0018107: peptidyl-threonine phosphorylation	1.86E-02
158	GO:0034605: cellular response to heat	2.03E-02
159	GO:0009266: response to temperature stimulus	2.03E-02
160	GO:0007031: peroxisome organization	2.20E-02
161	GO:0005985: sucrose metabolic process	2.20E-02
162	GO:0046854: phosphatidylinositol phosphorylation	2.20E-02
163	GO:0009644: response to high light intensity	2.29E-02
164	GO:0009636: response to toxic substance	2.38E-02
165	GO:0019344: cysteine biosynthetic process	2.56E-02
166	GO:0000027: ribosomal large subunit assembly	2.56E-02
167	GO:0009585: red, far-red light phototransduction	2.86E-02
168	GO:0061077: chaperone-mediated protein folding	2.94E-02
169	GO:0006306: DNA methylation	2.94E-02
170	GO:0016226: iron-sulfur cluster assembly	3.13E-02
171	GO:0010017: red or far-red light signaling pathway	3.13E-02
172	GO:0030433: ubiquitin-dependent ERAD pathway	3.13E-02
173	GO:0035428: hexose transmembrane transport	3.13E-02
174	GO:0009693: ethylene biosynthetic process	3.33E-02
175	GO:0009625: response to insect	3.33E-02
176	GO:0043086: negative regulation of catalytic activity	3.38E-02
177	GO:0009306: protein secretion	3.54E-02
178	GO:0009561: megagametogenesis	3.54E-02
179	GO:0006606: protein import into nucleus	3.96E-02
180	GO:0046323: glucose import	4.17E-02
181	GO:0006396: RNA processing	4.18E-02
182	GO:0044550: secondary metabolite biosynthetic process	4.37E-02
183	GO:0009646: response to absence of light	4.39E-02
184	GO:0015986: ATP synthesis coupled proton transport	4.39E-02
185	GO:0006814: sodium ion transport	4.39E-02
186	GO:0009791: post-embryonic development	4.62E-02
187	GO:0000302: response to reactive oxygen species	4.85E-02
188	GO:0045454: cell redox homeostasis	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
2	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
3	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
6	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
7	GO:0045550: geranylgeranyl reductase activity	0.00E+00
8	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
9	GO:0090711: FMN hydrolase activity	0.00E+00
10	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
11	GO:0008974: phosphoribulokinase activity	0.00E+00
12	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
13	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
14	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
15	GO:0008465: glycerate dehydrogenase activity	0.00E+00
16	GO:0046408: chlorophyll synthetase activity	0.00E+00
17	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
18	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
19	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
20	GO:0019843: rRNA binding	2.88E-13
21	GO:0016168: chlorophyll binding	3.45E-08
22	GO:0031409: pigment binding	3.63E-07
23	GO:0016851: magnesium chelatase activity	4.93E-07
24	GO:0008266: poly(U) RNA binding	7.85E-06
25	GO:0018708: thiol S-methyltransferase activity	9.75E-06
26	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	9.75E-06
27	GO:0016491: oxidoreductase activity	5.11E-05
28	GO:0003735: structural constituent of ribosome	7.58E-05
29	GO:0048038: quinone binding	9.87E-05
30	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.25E-04
31	GO:0009011: starch synthase activity	1.25E-04
32	GO:0016987: sigma factor activity	1.25E-04
33	GO:0043495: protein anchor	1.25E-04
34	GO:0001053: plastid sigma factor activity	1.25E-04
35	GO:0031072: heat shock protein binding	1.47E-04
36	GO:0016615: malate dehydrogenase activity	2.73E-04
37	GO:0005528: FK506 binding	2.80E-04
38	GO:0030060: L-malate dehydrogenase activity	3.65E-04
39	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	4.70E-04
40	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.70E-04
41	GO:0030794: (S)-coclaurine-N-methyltransferase activity	4.70E-04
42	GO:0016776: phosphotransferase activity, phosphate group as acceptor	4.70E-04
43	GO:0019899: enzyme binding	4.70E-04
44	GO:0080132: fatty acid alpha-hydroxylase activity	4.70E-04
45	GO:0004325: ferrochelatase activity	4.70E-04
46	GO:0008746: NAD(P)+ transhydrogenase activity	4.70E-04
47	GO:0004853: uroporphyrinogen decarboxylase activity	4.70E-04
48	GO:0042586: peptide deformylase activity	4.70E-04
49	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	4.70E-04
50	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.14E-04
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.26E-04
52	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.01E-03
53	GO:0004617: phosphoglycerate dehydrogenase activity	1.01E-03
54	GO:0004047: aminomethyltransferase activity	1.01E-03
55	GO:0052832: inositol monophosphate 3-phosphatase activity	1.01E-03
56	GO:0033201: alpha-1,4-glucan synthase activity	1.01E-03
57	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.01E-03
58	GO:0008479: queuine tRNA-ribosyltransferase activity	1.01E-03
59	GO:0016630: protochlorophyllide reductase activity	1.01E-03
60	GO:0019156: isoamylase activity	1.01E-03
61	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.01E-03
62	GO:0008934: inositol monophosphate 1-phosphatase activity	1.01E-03
63	GO:0052833: inositol monophosphate 4-phosphatase activity	1.01E-03
64	GO:0000234: phosphoethanolamine N-methyltransferase activity	1.01E-03
65	GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	1.01E-03
66	GO:0050017: L-3-cyanoalanine synthase activity	1.01E-03
67	GO:0008883: glutamyl-tRNA reductase activity	1.01E-03
68	GO:0047746: chlorophyllase activity	1.01E-03
69	GO:0042389: omega-3 fatty acid desaturase activity	1.01E-03
70	GO:0010297: heteropolysaccharide binding	1.01E-03
71	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.65E-03
72	GO:0043169: cation binding	1.65E-03
73	GO:0004373: glycogen (starch) synthase activity	1.65E-03
74	GO:0016992: lipoate synthase activity	1.65E-03
75	GO:0004751: ribose-5-phosphate isomerase activity	1.65E-03
76	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.65E-03
77	GO:0008864: formyltetrahydrofolate deformylase activity	1.65E-03
78	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.65E-03
79	GO:0004565: beta-galactosidase activity	1.76E-03
80	GO:0008168: methyltransferase activity	1.83E-03
81	GO:0004351: glutamate decarboxylase activity	2.39E-03
82	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	2.39E-03
83	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	2.39E-03
84	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	2.39E-03
85	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.39E-03
86	GO:0043023: ribosomal large subunit binding	2.39E-03
87	GO:0003746: translation elongation factor activity	2.73E-03
88	GO:0008453: alanine-glyoxylate transaminase activity	3.22E-03
89	GO:0008891: glycolate oxidase activity	3.22E-03
90	GO:0022891: substrate-specific transmembrane transporter activity	3.99E-03
91	GO:0003959: NADPH dehydrogenase activity	4.13E-03
92	GO:0051537: 2 iron, 2 sulfur cluster binding	4.18E-03
93	GO:0003727: single-stranded RNA binding	4.34E-03
94	GO:0047134: protein-disulfide reductase activity	4.71E-03
95	GO:0051287: NAD binding	4.83E-03
96	GO:0004332: fructose-bisphosphate aldolase activity	5.11E-03
97	GO:0004556: alpha-amylase activity	5.11E-03
98	GO:0016462: pyrophosphatase activity	5.11E-03
99	GO:0004130: cytochrome-c peroxidase activity	5.11E-03
100	GO:0042578: phosphoric ester hydrolase activity	5.11E-03
101	GO:0042802: identical protein binding	5.85E-03
102	GO:0016787: hydrolase activity	5.90E-03
103	GO:0004791: thioredoxin-disulfide reductase activity	5.91E-03
104	GO:0050662: coenzyme binding	5.91E-03
105	GO:0004124: cysteine synthase activity	6.17E-03
106	GO:0004849: uridine kinase activity	6.17E-03
107	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.17E-03
108	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.17E-03
109	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	6.17E-03
110	GO:0004427: inorganic diphosphatase activity	7.30E-03
111	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.74E-03
112	GO:0004033: aldo-keto reductase (NADP) activity	8.49E-03
113	GO:0051082: unfolded protein binding	8.69E-03
114	GO:0008135: translation factor activity, RNA binding	9.75E-03
115	GO:0071949: FAD binding	1.11E-02
116	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.25E-02
117	GO:0008047: enzyme activator activity	1.39E-02
118	GO:0030234: enzyme regulator activity	1.39E-02
119	GO:0004222: metalloendopeptidase activity	1.42E-02
120	GO:0003729: mRNA binding	1.63E-02
121	GO:0005315: inorganic phosphate transmembrane transporter activity	1.86E-02
122	GO:0004089: carbonate dehydratase activity	1.86E-02
123	GO:0004364: glutathione transferase activity	2.03E-02
124	GO:0004185: serine-type carboxypeptidase activity	2.12E-02
125	GO:0009055: electron carrier activity	2.19E-02
126	GO:0043621: protein self-association	2.29E-02
127	GO:0005515: protein binding	2.51E-02
128	GO:0004857: enzyme inhibitor activity	2.56E-02
129	GO:0051536: iron-sulfur cluster binding	2.56E-02
130	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.86E-02
131	GO:0003690: double-stranded DNA binding	2.96E-02
132	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.49E-02
133	GO:0008514: organic anion transmembrane transporter activity	3.54E-02
134	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.17E-02
135	GO:0015035: protein disulfide oxidoreductase activity	4.18E-02
136	GO:0005355: glucose transmembrane transporter activity	4.39E-02
137	GO:0010181: FMN binding	4.39E-02
138	GO:0004872: receptor activity	4.62E-02
139	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.85E-02