Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G13250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030155: regulation of cell adhesion0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
4GO:0031116: positive regulation of microtubule polymerization0.00E+00
5GO:0010068: protoderm histogenesis0.00E+00
6GO:0007037: vacuolar phosphate transport0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0042817: pyridoxal metabolic process0.00E+00
9GO:0031129: inductive cell-cell signaling0.00E+00
10GO:0070979: protein K11-linked ubiquitination0.00E+00
11GO:1905421: regulation of plant organ morphogenesis0.00E+00
12GO:0043488: regulation of mRNA stability0.00E+00
13GO:0061157: mRNA destabilization0.00E+00
14GO:0007166: cell surface receptor signaling pathway4.98E-05
15GO:1900865: chloroplast RNA modification6.96E-05
16GO:0009647: skotomorphogenesis7.91E-05
17GO:0006415: translational termination1.12E-04
18GO:0010158: abaxial cell fate specification2.11E-04
19GO:0045038: protein import into chloroplast thylakoid membrane2.11E-04
20GO:1902183: regulation of shoot apical meristem development2.11E-04
21GO:0006468: protein phosphorylation2.27E-04
22GO:0009944: polarity specification of adaxial/abaxial axis3.14E-04
23GO:0005992: trehalose biosynthetic process3.14E-04
24GO:0009648: photoperiodism3.98E-04
25GO:0051171: regulation of nitrogen compound metabolic process4.98E-04
26GO:0010482: regulation of epidermal cell division4.98E-04
27GO:0006659: phosphatidylserine biosynthetic process4.98E-04
28GO:0006264: mitochondrial DNA replication4.98E-04
29GO:0033259: plastid DNA replication4.98E-04
30GO:1902458: positive regulation of stomatal opening4.98E-04
31GO:0005991: trehalose metabolic process4.98E-04
32GO:0010450: inflorescence meristem growth4.98E-04
33GO:0006747: FAD biosynthetic process4.98E-04
34GO:0009658: chloroplast organization5.61E-04
35GO:0070413: trehalose metabolism in response to stress6.37E-04
36GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway9.23E-04
37GO:2000024: regulation of leaf development9.28E-04
38GO:0040008: regulation of growth9.75E-04
39GO:0006739: NADP metabolic process1.07E-03
40GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole1.07E-03
41GO:1900871: chloroplast mRNA modification1.07E-03
42GO:2000039: regulation of trichome morphogenesis1.07E-03
43GO:0007154: cell communication1.07E-03
44GO:1900033: negative regulation of trichome patterning1.07E-03
45GO:0034755: iron ion transmembrane transport1.07E-03
46GO:0042814: monopolar cell growth1.07E-03
47GO:1903426: regulation of reactive oxygen species biosynthetic process1.07E-03
48GO:0015804: neutral amino acid transport1.07E-03
49GO:0009585: red, far-red light phototransduction1.17E-03
50GO:0009684: indoleacetic acid biosynthetic process1.47E-03
51GO:0048281: inflorescence morphogenesis1.75E-03
52GO:0051127: positive regulation of actin nucleation1.75E-03
53GO:0031145: anaphase-promoting complex-dependent catabolic process1.75E-03
54GO:0043693: monoterpene biosynthetic process1.75E-03
55GO:0080055: low-affinity nitrate transport1.75E-03
56GO:0045604: regulation of epidermal cell differentiation1.75E-03
57GO:0009150: purine ribonucleotide metabolic process1.75E-03
58GO:0001578: microtubule bundle formation1.75E-03
59GO:0045493: xylan catabolic process1.75E-03
60GO:0045165: cell fate commitment1.75E-03
61GO:0009226: nucleotide-sugar biosynthetic process2.54E-03
62GO:0048645: animal organ formation2.54E-03
63GO:0008615: pyridoxine biosynthetic process2.54E-03
64GO:0010255: glucose mediated signaling pathway2.54E-03
65GO:0048530: fruit morphogenesis2.54E-03
66GO:0006168: adenine salvage2.54E-03
67GO:0006164: purine nucleotide biosynthetic process2.54E-03
68GO:0010148: transpiration2.54E-03
69GO:0009963: positive regulation of flavonoid biosynthetic process2.54E-03
70GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.54E-03
71GO:0009067: aspartate family amino acid biosynthetic process2.54E-03
72GO:0006166: purine ribonucleoside salvage2.54E-03
73GO:0007231: osmosensory signaling pathway2.54E-03
74GO:0030071: regulation of mitotic metaphase/anaphase transition2.54E-03
75GO:0051639: actin filament network formation2.54E-03
76GO:0042753: positive regulation of circadian rhythm2.70E-03
77GO:0007010: cytoskeleton organization3.00E-03
78GO:0051322: anaphase3.42E-03
79GO:0009765: photosynthesis, light harvesting3.42E-03
80GO:0033500: carbohydrate homeostasis3.42E-03
81GO:0022622: root system development3.42E-03
82GO:0006021: inositol biosynthetic process3.42E-03
83GO:0009649: entrainment of circadian clock3.42E-03
84GO:0007020: microtubule nucleation3.42E-03
85GO:0006734: NADH metabolic process3.42E-03
86GO:0009165: nucleotide biosynthetic process3.42E-03
87GO:0048629: trichome patterning3.42E-03
88GO:0051764: actin crosslink formation3.42E-03
89GO:0009733: response to auxin3.97E-03
90GO:0032876: negative regulation of DNA endoreduplication4.38E-03
91GO:0046785: microtubule polymerization4.38E-03
92GO:0046283: anthocyanin-containing compound metabolic process4.38E-03
93GO:0016120: carotene biosynthetic process4.38E-03
94GO:0016123: xanthophyll biosynthetic process4.38E-03
95GO:0044209: AMP salvage4.38E-03
96GO:0009965: leaf morphogenesis4.91E-03
97GO:0009789: positive regulation of abscisic acid-activated signaling pathway5.14E-03
98GO:0016117: carotenoid biosynthetic process5.14E-03
99GO:0006139: nucleobase-containing compound metabolic process5.43E-03
100GO:0048831: regulation of shoot system development5.43E-03
101GO:0016554: cytidine to uridine editing5.43E-03
102GO:0032973: amino acid export5.43E-03
103GO:0000741: karyogamy5.43E-03
104GO:0010264: myo-inositol hexakisphosphate biosynthetic process5.43E-03
105GO:0010087: phloem or xylem histogenesis5.56E-03
106GO:0009958: positive gravitropism5.99E-03
107GO:0010154: fruit development5.99E-03
108GO:0010182: sugar mediated signaling pathway5.99E-03
109GO:0007018: microtubule-based movement6.45E-03
110GO:0042372: phylloquinone biosynthetic process6.56E-03
111GO:0009082: branched-chain amino acid biosynthetic process6.56E-03
112GO:0048280: vesicle fusion with Golgi apparatus6.56E-03
113GO:2000033: regulation of seed dormancy process6.56E-03
114GO:0009099: valine biosynthetic process6.56E-03
115GO:0030488: tRNA methylation6.56E-03
116GO:0009088: threonine biosynthetic process6.56E-03
117GO:0048444: floral organ morphogenesis6.56E-03
118GO:0080086: stamen filament development6.56E-03
119GO:0070370: cellular heat acclimation7.76E-03
120GO:0010103: stomatal complex morphogenesis7.76E-03
121GO:0032880: regulation of protein localization7.76E-03
122GO:0009395: phospholipid catabolic process7.76E-03
123GO:0048528: post-embryonic root development7.76E-03
124GO:0043090: amino acid import7.76E-03
125GO:0048367: shoot system development7.99E-03
126GO:0007155: cell adhesion9.03E-03
127GO:0033386: geranylgeranyl diphosphate biosynthetic process9.03E-03
128GO:0010078: maintenance of root meristem identity9.03E-03
129GO:0009704: de-etiolation9.03E-03
130GO:0032875: regulation of DNA endoreduplication9.03E-03
131GO:0042255: ribosome assembly9.03E-03
132GO:0046620: regulation of organ growth9.03E-03
133GO:0006353: DNA-templated transcription, termination9.03E-03
134GO:2000070: regulation of response to water deprivation9.03E-03
135GO:0009231: riboflavin biosynthetic process9.03E-03
136GO:0052543: callose deposition in cell wall9.03E-03
137GO:0016310: phosphorylation1.03E-02
138GO:0001558: regulation of cell growth1.04E-02
139GO:0009827: plant-type cell wall modification1.04E-02
140GO:0009097: isoleucine biosynthetic process1.04E-02
141GO:0009657: plastid organization1.04E-02
142GO:0006997: nucleus organization1.04E-02
143GO:0032544: plastid translation1.04E-02
144GO:0043562: cellular response to nitrogen levels1.04E-02
145GO:0010093: specification of floral organ identity1.04E-02
146GO:0009051: pentose-phosphate shunt, oxidative branch1.18E-02
147GO:0080144: amino acid homeostasis1.18E-02
148GO:0045337: farnesyl diphosphate biosynthetic process1.18E-02
149GO:0033384: geranyl diphosphate biosynthetic process1.18E-02
150GO:0000373: Group II intron splicing1.18E-02
151GO:0006189: 'de novo' IMP biosynthetic process1.18E-02
152GO:0009627: systemic acquired resistance1.20E-02
153GO:0048573: photoperiodism, flowering1.27E-02
154GO:0009638: phototropism1.33E-02
155GO:0009098: leucine biosynthetic process1.33E-02
156GO:0010018: far-red light signaling pathway1.33E-02
157GO:0010380: regulation of chlorophyll biosynthetic process1.33E-02
158GO:0071577: zinc II ion transmembrane transport1.33E-02
159GO:0009299: mRNA transcription1.48E-02
160GO:0010162: seed dormancy process1.48E-02
161GO:0006896: Golgi to vacuole transport1.48E-02
162GO:0006535: cysteine biosynthetic process from serine1.48E-02
163GO:0009832: plant-type cell wall biogenesis1.48E-02
164GO:0045036: protein targeting to chloroplast1.48E-02
165GO:0009641: shade avoidance1.48E-02
166GO:0006949: syncytium formation1.48E-02
167GO:0048527: lateral root development1.63E-02
168GO:0009089: lysine biosynthetic process via diaminopimelate1.64E-02
169GO:0006816: calcium ion transport1.64E-02
170GO:0009773: photosynthetic electron transport in photosystem I1.64E-02
171GO:1903507: negative regulation of nucleic acid-templated transcription1.64E-02
172GO:0006879: cellular iron ion homeostasis1.64E-02
173GO:0000272: polysaccharide catabolic process1.64E-02
174GO:0006790: sulfur compound metabolic process1.81E-02
175GO:0007623: circadian rhythm1.95E-02
176GO:0045490: pectin catabolic process1.95E-02
177GO:0010588: cotyledon vascular tissue pattern formation1.98E-02
178GO:2000012: regulation of auxin polar transport1.98E-02
179GO:0010628: positive regulation of gene expression1.98E-02
180GO:0006006: glucose metabolic process1.98E-02
181GO:0030036: actin cytoskeleton organization1.98E-02
182GO:0009725: response to hormone1.98E-02
183GO:0016042: lipid catabolic process2.15E-02
184GO:0048467: gynoecium development2.16E-02
185GO:0006541: glutamine metabolic process2.16E-02
186GO:0010020: chloroplast fission2.16E-02
187GO:0009933: meristem structural organization2.16E-02
188GO:0008283: cell proliferation2.31E-02
189GO:0009640: photomorphogenesis2.31E-02
190GO:0010030: positive regulation of seed germination2.34E-02
191GO:0070588: calcium ion transmembrane transport2.34E-02
192GO:0000162: tryptophan biosynthetic process2.53E-02
193GO:0009833: plant-type primary cell wall biogenesis2.53E-02
194GO:0006833: water transport2.53E-02
195GO:0030150: protein import into mitochondrial matrix2.72E-02
196GO:0051017: actin filament bundle assembly2.72E-02
197GO:0010187: negative regulation of seed germination2.72E-02
198GO:0019344: cysteine biosynthetic process2.72E-02
199GO:0009664: plant-type cell wall organization2.90E-02
200GO:0008299: isoprenoid biosynthetic process2.92E-02
201GO:0043622: cortical microtubule organization2.92E-02
202GO:0051302: regulation of cell division2.92E-02
203GO:0003333: amino acid transmembrane transport3.13E-02
204GO:0048511: rhythmic process3.13E-02
205GO:0051603: proteolysis involved in cellular protein catabolic process3.23E-02
206GO:2000022: regulation of jasmonic acid mediated signaling pathway3.33E-02
207GO:0006730: one-carbon metabolic process3.33E-02
208GO:0031348: negative regulation of defense response3.33E-02
209GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.55E-02
210GO:0010082: regulation of root meristem growth3.55E-02
211GO:0001944: vasculature development3.55E-02
212GO:0010091: trichome branching3.77E-02
213GO:0009306: protein secretion3.77E-02
214GO:0010214: seed coat development3.77E-02
215GO:0008284: positive regulation of cell proliferation3.99E-02
216GO:0042147: retrograde transport, endosome to Golgi3.99E-02
217GO:0009740: gibberellic acid mediated signaling pathway4.17E-02
218GO:0042631: cellular response to water deprivation4.21E-02
219GO:0000226: microtubule cytoskeleton organization4.21E-02
220GO:0080022: primary root development4.21E-02
221GO:0042335: cuticle development4.21E-02
222GO:0008033: tRNA processing4.21E-02
223GO:0034220: ion transmembrane transport4.21E-02
224GO:0008360: regulation of cell shape4.44E-02
225GO:0010197: polar nucleus fusion4.44E-02
226GO:0006396: RNA processing4.55E-02
227GO:0009742: brassinosteroid mediated signaling pathway4.69E-02
228GO:0006623: protein targeting to vacuole4.91E-02
229GO:0048825: cotyledon development4.91E-02
230GO:0009791: post-embryonic development4.91E-02
231GO:0008654: phospholipid biosynthetic process4.91E-02
232GO:0009851: auxin biosynthetic process4.91E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0043864: indoleacetamide hydrolase activity0.00E+00
3GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0019136: deoxynucleoside kinase activity0.00E+00
8GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.78E-06
9GO:0003747: translation release factor activity5.29E-05
10GO:0016149: translation release factor activity, codon specific7.91E-05
11GO:0008017: microtubule binding2.45E-04
12GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.98E-04
13GO:0052856: NADHX epimerase activity4.98E-04
14GO:0052857: NADPHX epimerase activity4.98E-04
15GO:0050139: nicotinate-N-glucosyltransferase activity4.98E-04
16GO:0004733: pyridoxamine-phosphate oxidase activity4.98E-04
17GO:0030570: pectate lyase activity5.15E-04
18GO:0016788: hydrolase activity, acting on ester bonds5.82E-04
19GO:0016301: kinase activity7.32E-04
20GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.07E-03
21GO:0016630: protochlorophyllide reductase activity1.07E-03
22GO:0003919: FMN adenylyltransferase activity1.07E-03
23GO:0004512: inositol-3-phosphate synthase activity1.07E-03
24GO:0015172: acidic amino acid transmembrane transporter activity1.07E-03
25GO:0050017: L-3-cyanoalanine synthase activity1.07E-03
26GO:0017118: lipoyltransferase activity1.07E-03
27GO:0043425: bHLH transcription factor binding1.07E-03
28GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.07E-03
29GO:0009977: proton motive force dependent protein transmembrane transporter activity1.07E-03
30GO:0004805: trehalose-phosphatase activity1.27E-03
31GO:0047372: acylglycerol lipase activity1.47E-03
32GO:0004557: alpha-galactosidase activity1.75E-03
33GO:0004049: anthranilate synthase activity1.75E-03
34GO:0052692: raffinose alpha-galactosidase activity1.75E-03
35GO:0080054: low-affinity nitrate transmembrane transporter activity1.75E-03
36GO:0004072: aspartate kinase activity2.54E-03
37GO:0015175: neutral amino acid transmembrane transporter activity2.54E-03
38GO:0003999: adenine phosphoribosyltransferase activity2.54E-03
39GO:0017172: cysteine dioxygenase activity2.54E-03
40GO:0052656: L-isoleucine transaminase activity2.54E-03
41GO:0047627: adenylylsulfatase activity2.54E-03
42GO:0052654: L-leucine transaminase activity2.54E-03
43GO:0052655: L-valine transaminase activity2.54E-03
44GO:0001872: (1->3)-beta-D-glucan binding2.54E-03
45GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.54E-03
46GO:0004674: protein serine/threonine kinase activity2.61E-03
47GO:0016829: lyase activity3.19E-03
48GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.42E-03
49GO:0080032: methyl jasmonate esterase activity3.42E-03
50GO:0009044: xylan 1,4-beta-xylosidase activity3.42E-03
51GO:0004084: branched-chain-amino-acid transaminase activity3.42E-03
52GO:0019199: transmembrane receptor protein kinase activity3.42E-03
53GO:0042277: peptide binding3.42E-03
54GO:0046556: alpha-L-arabinofuranosidase activity3.42E-03
55GO:0004345: glucose-6-phosphate dehydrogenase activity3.42E-03
56GO:0008409: 5'-3' exonuclease activity3.42E-03
57GO:0016846: carbon-sulfur lyase activity4.38E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor4.38E-03
59GO:0004040: amidase activity4.38E-03
60GO:0003727: single-stranded RNA binding4.74E-03
61GO:0016208: AMP binding5.43E-03
62GO:0102229: amylopectin maltohydrolase activity5.43E-03
63GO:0042578: phosphoric ester hydrolase activity5.43E-03
64GO:0003730: mRNA 3'-UTR binding6.56E-03
65GO:0016161: beta-amylase activity6.56E-03
66GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.56E-03
67GO:0004124: cysteine synthase activity6.56E-03
68GO:0042802: identical protein binding6.68E-03
69GO:0003777: microtubule motor activity7.05E-03
70GO:0019899: enzyme binding7.76E-03
71GO:0016791: phosphatase activity9.00E-03
72GO:0043022: ribosome binding9.03E-03
73GO:0004311: farnesyltranstransferase activity9.03E-03
74GO:0008173: RNA methyltransferase activity1.04E-02
75GO:0004337: geranyltranstransferase activity1.18E-02
76GO:0030247: polysaccharide binding1.27E-02
77GO:0005381: iron ion transmembrane transporter activity1.33E-02
78GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.34E-02
79GO:0052689: carboxylic ester hydrolase activity1.46E-02
80GO:0004713: protein tyrosine kinase activity1.48E-02
81GO:0008327: methyl-CpG binding1.64E-02
82GO:0004161: dimethylallyltranstransferase activity1.64E-02
83GO:0015266: protein channel activity1.98E-02
84GO:0004089: carbonate dehydratase activity1.98E-02
85GO:0031072: heat shock protein binding1.98E-02
86GO:0005262: calcium channel activity1.98E-02
87GO:0008083: growth factor activity2.16E-02
88GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.16E-02
89GO:0004185: serine-type carboxypeptidase activity2.31E-02
90GO:0005524: ATP binding2.38E-02
91GO:0043621: protein self-association2.50E-02
92GO:0003887: DNA-directed DNA polymerase activity2.53E-02
93GO:0005528: FK506 binding2.72E-02
94GO:0003714: transcription corepressor activity2.72E-02
95GO:0005385: zinc ion transmembrane transporter activity2.72E-02
96GO:0008324: cation transmembrane transporter activity2.92E-02
97GO:0051087: chaperone binding2.92E-02
98GO:0004176: ATP-dependent peptidase activity3.13E-02
99GO:0015171: amino acid transmembrane transporter activity3.45E-02
100GO:0016760: cellulose synthase (UDP-forming) activity3.55E-02
101GO:0001085: RNA polymerase II transcription factor binding4.44E-02
102GO:0004672: protein kinase activity4.60E-02
103GO:0010181: FMN binding4.68E-02
104GO:0016757: transferase activity, transferring glycosyl groups4.87E-02
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Gene type



Gene DE type