Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G12800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010335: response to non-ionic osmotic stress0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0090279: regulation of calcium ion import0.00E+00
5GO:0090470: shoot organ boundary specification0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0071474: cellular hyperosmotic response0.00E+00
8GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
9GO:0046471: phosphatidylglycerol metabolic process0.00E+00
10GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
11GO:0006982: response to lipid hydroperoxide0.00E+00
12GO:0002184: cytoplasmic translational termination0.00E+00
13GO:0015995: chlorophyll biosynthetic process6.52E-16
14GO:0015979: photosynthesis4.13E-10
15GO:0055114: oxidation-reduction process3.60E-08
16GO:0009658: chloroplast organization1.34E-07
17GO:0019252: starch biosynthetic process1.97E-07
18GO:0010207: photosystem II assembly2.01E-07
19GO:0032544: plastid translation6.81E-07
20GO:0010021: amylopectin biosynthetic process1.49E-06
21GO:0009735: response to cytokinin1.71E-05
22GO:0048564: photosystem I assembly2.51E-05
23GO:0071482: cellular response to light stimulus3.54E-05
24GO:0006783: heme biosynthetic process4.82E-05
25GO:2001141: regulation of RNA biosynthetic process7.39E-05
26GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.39E-05
27GO:0045727: positive regulation of translation1.29E-04
28GO:0015969: guanosine tetraphosphate metabolic process4.78E-04
29GO:0009090: homoserine biosynthetic process4.78E-04
30GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.78E-04
31GO:0043489: RNA stabilization4.78E-04
32GO:1904966: positive regulation of vitamin E biosynthetic process4.78E-04
33GO:0043953: protein transport by the Tat complex4.78E-04
34GO:0000481: maturation of 5S rRNA4.78E-04
35GO:0015801: aromatic amino acid transport4.78E-04
36GO:1904964: positive regulation of phytol biosynthetic process4.78E-04
37GO:0010426: DNA methylation on cytosine within a CHH sequence4.78E-04
38GO:0065002: intracellular protein transmembrane transport4.78E-04
39GO:0043686: co-translational protein modification4.78E-04
40GO:0043087: regulation of GTPase activity4.78E-04
41GO:0071461: cellular response to redox state4.78E-04
42GO:0051775: response to redox state4.78E-04
43GO:0071277: cellular response to calcium ion4.78E-04
44GO:1902458: positive regulation of stomatal opening4.78E-04
45GO:0034337: RNA folding4.78E-04
46GO:0009704: de-etiolation6.01E-04
47GO:0016559: peroxisome fission6.01E-04
48GO:0006779: porphyrin-containing compound biosynthetic process1.03E-03
49GO:0080005: photosystem stoichiometry adjustment1.03E-03
50GO:0042819: vitamin B6 biosynthetic process1.03E-03
51GO:1902326: positive regulation of chlorophyll biosynthetic process1.03E-03
52GO:0080183: response to photooxidative stress1.03E-03
53GO:0006729: tetrahydrobiopterin biosynthetic process1.03E-03
54GO:1903426: regulation of reactive oxygen species biosynthetic process1.03E-03
55GO:0030388: fructose 1,6-bisphosphate metabolic process1.03E-03
56GO:0051262: protein tetramerization1.03E-03
57GO:0010275: NAD(P)H dehydrogenase complex assembly1.03E-03
58GO:0006412: translation1.13E-03
59GO:0006782: protoporphyrinogen IX biosynthetic process1.20E-03
60GO:0009773: photosynthetic electron transport in photosystem I1.39E-03
61GO:0006352: DNA-templated transcription, initiation1.39E-03
62GO:0018119: peptidyl-cysteine S-nitrosylation1.39E-03
63GO:0010027: thylakoid membrane organization1.49E-03
64GO:0006518: peptide metabolic process1.68E-03
65GO:0006000: fructose metabolic process1.68E-03
66GO:0034051: negative regulation of plant-type hypersensitive response1.68E-03
67GO:0044375: regulation of peroxisome size1.68E-03
68GO:0005977: glycogen metabolic process1.68E-03
69GO:0006094: gluconeogenesis1.80E-03
70GO:0019253: reductive pentose-phosphate cycle2.04E-03
71GO:0042254: ribosome biogenesis2.12E-03
72GO:0046653: tetrahydrofolate metabolic process2.44E-03
73GO:0006107: oxaloacetate metabolic process2.44E-03
74GO:0009052: pentose-phosphate shunt, non-oxidative branch2.44E-03
75GO:0033014: tetrapyrrole biosynthetic process2.44E-03
76GO:0008615: pyridoxine biosynthetic process2.44E-03
77GO:0010731: protein glutathionylation2.44E-03
78GO:1901332: negative regulation of lateral root development2.44E-03
79GO:0042823: pyridoxal phosphate biosynthetic process2.44E-03
80GO:0009067: aspartate family amino acid biosynthetic process2.44E-03
81GO:0010371: regulation of gibberellin biosynthetic process2.44E-03
82GO:0006020: inositol metabolic process2.44E-03
83GO:0009152: purine ribonucleotide biosynthetic process2.44E-03
84GO:0006636: unsaturated fatty acid biosynthetic process2.55E-03
85GO:0009853: photorespiration2.83E-03
86GO:0009768: photosynthesis, light harvesting in photosystem I3.12E-03
87GO:0015994: chlorophyll metabolic process3.28E-03
88GO:0006536: glutamate metabolic process3.28E-03
89GO:0006546: glycine catabolic process3.28E-03
90GO:0006021: inositol biosynthetic process3.28E-03
91GO:0010600: regulation of auxin biosynthetic process3.28E-03
92GO:0006734: NADH metabolic process3.28E-03
93GO:0044550: secondary metabolite biosynthetic process3.48E-03
94GO:0006633: fatty acid biosynthetic process3.66E-03
95GO:0019748: secondary metabolic process3.76E-03
96GO:0000304: response to singlet oxygen4.21E-03
97GO:0006564: L-serine biosynthetic process4.21E-03
98GO:0045038: protein import into chloroplast thylakoid membrane4.21E-03
99GO:0006656: phosphatidylcholine biosynthetic process4.21E-03
100GO:0043097: pyrimidine nucleoside salvage4.21E-03
101GO:0031365: N-terminal protein amino acid modification4.21E-03
102GO:0009107: lipoate biosynthetic process4.21E-03
103GO:0006655: phosphatidylglycerol biosynthetic process5.21E-03
104GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.21E-03
105GO:0006014: D-ribose metabolic process5.21E-03
106GO:0006206: pyrimidine nucleobase metabolic process5.21E-03
107GO:0046855: inositol phosphate dephosphorylation5.21E-03
108GO:0042549: photosystem II stabilization5.21E-03
109GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.21E-03
110GO:0042631: cellular response to water deprivation5.23E-03
111GO:0006520: cellular amino acid metabolic process5.64E-03
112GO:0006364: rRNA processing5.73E-03
113GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.28E-03
114GO:0010189: vitamin E biosynthetic process6.28E-03
115GO:0009854: oxidative photosynthetic carbon pathway6.28E-03
116GO:0009088: threonine biosynthetic process6.28E-03
117GO:0006810: transport6.46E-03
118GO:1900057: positive regulation of leaf senescence7.43E-03
119GO:0009645: response to low light intensity stimulus7.43E-03
120GO:0010161: red light signaling pathway7.43E-03
121GO:0009772: photosynthetic electron transport in photosystem II7.43E-03
122GO:0010928: regulation of auxin mediated signaling pathway8.65E-03
123GO:0005978: glycogen biosynthetic process8.65E-03
124GO:0032508: DNA duplex unwinding8.65E-03
125GO:2000070: regulation of response to water deprivation8.65E-03
126GO:0042255: ribosome assembly8.65E-03
127GO:0006353: DNA-templated transcription, termination8.65E-03
128GO:0015996: chlorophyll catabolic process9.94E-03
129GO:0007186: G-protein coupled receptor signaling pathway9.94E-03
130GO:0006526: arginine biosynthetic process9.94E-03
131GO:0009657: plastid organization9.94E-03
132GO:0006002: fructose 6-phosphate metabolic process9.94E-03
133GO:0090333: regulation of stomatal closure1.13E-02
134GO:0006754: ATP biosynthetic process1.13E-02
135GO:0009086: methionine biosynthetic process1.27E-02
136GO:0005982: starch metabolic process1.27E-02
137GO:0009817: defense response to fungus, incompatible interaction1.32E-02
138GO:0018298: protein-chromophore linkage1.32E-02
139GO:0006535: cysteine biosynthetic process from serine1.42E-02
140GO:0043069: negative regulation of programmed cell death1.42E-02
141GO:0045036: protein targeting to chloroplast1.42E-02
142GO:0007568: aging1.53E-02
143GO:0019684: photosynthesis, light reaction1.57E-02
144GO:0009089: lysine biosynthetic process via diaminopimelate1.57E-02
145GO:0000272: polysaccharide catabolic process1.57E-02
146GO:0008285: negative regulation of cell proliferation1.57E-02
147GO:0016051: carbohydrate biosynthetic process1.68E-02
148GO:0006790: sulfur compound metabolic process1.73E-02
149GO:0016024: CDP-diacylglycerol biosynthetic process1.73E-02
150GO:0045037: protein import into chloroplast stroma1.73E-02
151GO:0005975: carbohydrate metabolic process1.79E-02
152GO:0006108: malate metabolic process1.90E-02
153GO:0006807: nitrogen compound metabolic process1.90E-02
154GO:0018107: peptidyl-threonine phosphorylation1.90E-02
155GO:0009725: response to hormone1.90E-02
156GO:0009767: photosynthetic electron transport chain1.90E-02
157GO:0005986: sucrose biosynthetic process1.90E-02
158GO:0032259: methylation1.92E-02
159GO:0006631: fatty acid metabolic process2.00E-02
160GO:0034605: cellular response to heat2.07E-02
161GO:0010020: chloroplast fission2.07E-02
162GO:0009266: response to temperature stimulus2.07E-02
163GO:0007031: peroxisome organization2.24E-02
164GO:0046854: phosphatidylinositol phosphorylation2.24E-02
165GO:0019762: glucosinolate catabolic process2.42E-02
166GO:0009636: response to toxic substance2.45E-02
167GO:0000027: ribosomal large subunit assembly2.61E-02
168GO:0019344: cysteine biosynthetic process2.61E-02
169GO:0042538: hyperosmotic salinity response2.73E-02
170GO:0008299: isoprenoid biosynthetic process2.80E-02
171GO:0007017: microtubule-based process2.80E-02
172GO:0010073: meristem maintenance2.80E-02
173GO:0061077: chaperone-mediated protein folding2.99E-02
174GO:0031408: oxylipin biosynthetic process2.99E-02
175GO:0006306: DNA methylation2.99E-02
176GO:0003333: amino acid transmembrane transport2.99E-02
177GO:0048511: rhythmic process2.99E-02
178GO:0010431: seed maturation2.99E-02
179GO:0016226: iron-sulfur cluster assembly3.19E-02
180GO:0010017: red or far-red light signaling pathway3.19E-02
181GO:0030433: ubiquitin-dependent ERAD pathway3.19E-02
182GO:0035428: hexose transmembrane transport3.19E-02
183GO:0080092: regulation of pollen tube growth3.19E-02
184GO:0009625: response to insect3.40E-02
185GO:0010227: floral organ abscission3.40E-02
186GO:0006096: glycolytic process3.47E-02
187GO:0009409: response to cold3.56E-02
188GO:0006817: phosphate ion transport3.60E-02
189GO:0009306: protein secretion3.60E-02
190GO:0042335: cuticle development4.03E-02
191GO:0006606: protein import into nucleus4.03E-02
192GO:0010182: sugar mediated signaling pathway4.25E-02
193GO:0046323: glucose import4.25E-02
194GO:0009741: response to brassinosteroid4.25E-02
195GO:0006396: RNA processing4.29E-02
196GO:0015986: ATP synthesis coupled proton transport4.48E-02
197GO:0009646: response to absence of light4.48E-02
198GO:0046686: response to cadmium ion4.59E-02
199GO:0009791: post-embryonic development4.71E-02
200GO:0000302: response to reactive oxygen species4.94E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
4GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
5GO:0045550: geranylgeranyl reductase activity0.00E+00
6GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
7GO:0090711: FMN hydrolase activity0.00E+00
8GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
9GO:0008974: phosphoribulokinase activity0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
12GO:0004760: serine-pyruvate transaminase activity0.00E+00
13GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
14GO:0008465: glycerate dehydrogenase activity0.00E+00
15GO:0046408: chlorophyll synthetase activity0.00E+00
16GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
17GO:0050281: serine-glyoxylate transaminase activity0.00E+00
18GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
19GO:0019843: rRNA binding1.71E-10
20GO:0008266: poly(U) RNA binding8.29E-06
21GO:0010277: chlorophyllide a oxygenase [overall] activity3.43E-05
22GO:0016851: magnesium chelatase activity7.39E-05
23GO:0016987: sigma factor activity1.29E-04
24GO:0009011: starch synthase activity1.29E-04
25GO:0001053: plastid sigma factor activity1.29E-04
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.29E-04
27GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.32E-04
28GO:0031072: heat shock protein binding1.53E-04
29GO:0016491: oxidoreductase activity2.11E-04
30GO:0003735: structural constituent of ribosome2.77E-04
31GO:0005528: FK506 binding2.90E-04
32GO:0016776: phosphotransferase activity, phosphate group as acceptor4.78E-04
33GO:0080132: fatty acid alpha-hydroxylase activity4.78E-04
34GO:0008746: NAD(P)+ transhydrogenase activity4.78E-04
35GO:0004325: ferrochelatase activity4.78E-04
36GO:0004853: uroporphyrinogen decarboxylase activity4.78E-04
37GO:0042586: peptide deformylase activity4.78E-04
38GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.78E-04
39GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.78E-04
40GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.78E-04
41GO:0005227: calcium activated cation channel activity4.78E-04
42GO:0048038: quinone binding9.34E-04
43GO:0015173: aromatic amino acid transmembrane transporter activity1.03E-03
44GO:0018708: thiol S-methyltransferase activity1.03E-03
45GO:0003844: 1,4-alpha-glucan branching enzyme activity1.03E-03
46GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.03E-03
47GO:0016630: protochlorophyllide reductase activity1.03E-03
48GO:0019156: isoamylase activity1.03E-03
49GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.03E-03
50GO:0008934: inositol monophosphate 1-phosphatase activity1.03E-03
51GO:0008728: GTP diphosphokinase activity1.03E-03
52GO:0052833: inositol monophosphate 4-phosphatase activity1.03E-03
53GO:0000234: phosphoethanolamine N-methyltransferase activity1.03E-03
54GO:0004412: homoserine dehydrogenase activity1.03E-03
55GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity1.03E-03
56GO:0050017: L-3-cyanoalanine synthase activity1.03E-03
57GO:0008883: glutamyl-tRNA reductase activity1.03E-03
58GO:0042389: omega-3 fatty acid desaturase activity1.03E-03
59GO:0010297: heteropolysaccharide binding1.03E-03
60GO:0009977: proton motive force dependent protein transmembrane transporter activity1.03E-03
61GO:0004617: phosphoglycerate dehydrogenase activity1.03E-03
62GO:0004047: aminomethyltransferase activity1.03E-03
63GO:0052832: inositol monophosphate 3-phosphatase activity1.03E-03
64GO:0033201: alpha-1,4-glucan synthase activity1.03E-03
65GO:0016168: chlorophyll binding1.60E-03
66GO:0005504: fatty acid binding1.68E-03
67GO:0043169: cation binding1.68E-03
68GO:0004373: glycogen (starch) synthase activity1.68E-03
69GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.68E-03
70GO:0016992: lipoate synthase activity1.68E-03
71GO:0004751: ribose-5-phosphate isomerase activity1.68E-03
72GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.68E-03
73GO:0070402: NADPH binding1.68E-03
74GO:0008864: formyltetrahydrofolate deformylase activity1.68E-03
75GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.68E-03
76GO:0004565: beta-galactosidase activity1.80E-03
77GO:0004072: aspartate kinase activity2.44E-03
78GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.44E-03
79GO:0043023: ribosomal large subunit binding2.44E-03
80GO:0004351: glutamate decarboxylase activity2.44E-03
81GO:0031409: pigment binding2.55E-03
82GO:0003746: translation elongation factor activity2.83E-03
83GO:0008453: alanine-glyoxylate transaminase activity3.28E-03
84GO:0045430: chalcone isomerase activity3.28E-03
85GO:0043495: protein anchor3.28E-03
86GO:0003959: NADPH dehydrogenase activity4.21E-03
87GO:0005275: amine transmembrane transporter activity4.21E-03
88GO:0051537: 2 iron, 2 sulfur cluster binding4.33E-03
89GO:0003727: single-stranded RNA binding4.46E-03
90GO:0051287: NAD binding4.99E-03
91GO:0004556: alpha-amylase activity5.21E-03
92GO:0004130: cytochrome-c peroxidase activity5.21E-03
93GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.21E-03
94GO:0016615: malate dehydrogenase activity5.21E-03
95GO:0042578: phosphoric ester hydrolase activity5.21E-03
96GO:0004332: fructose-bisphosphate aldolase activity5.21E-03
97GO:0050662: coenzyme binding6.06E-03
98GO:0042802: identical protein binding6.09E-03
99GO:0004849: uridine kinase activity6.28E-03
100GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.28E-03
101GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.28E-03
102GO:0004747: ribokinase activity6.28E-03
103GO:0030060: L-malate dehydrogenase activity6.28E-03
104GO:0005261: cation channel activity6.28E-03
105GO:0003886: DNA (cytosine-5-)-methyltransferase activity6.28E-03
106GO:0004124: cysteine synthase activity6.28E-03
107GO:0005506: iron ion binding7.15E-03
108GO:0019899: enzyme binding7.43E-03
109GO:0004033: aldo-keto reductase (NADP) activity8.65E-03
110GO:0008865: fructokinase activity8.65E-03
111GO:0051082: unfolded protein binding9.00E-03
112GO:0016597: amino acid binding9.55E-03
113GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.94E-03
114GO:0008135: translation factor activity, RNA binding9.94E-03
115GO:0071949: FAD binding1.13E-02
116GO:0004743: pyruvate kinase activity1.27E-02
117GO:0030955: potassium ion binding1.27E-02
118GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.27E-02
119GO:0005525: GTP binding1.36E-02
120GO:0030234: enzyme regulator activity1.42E-02
121GO:0004222: metalloendopeptidase activity1.46E-02
122GO:0016787: hydrolase activity1.55E-02
123GO:0005089: Rho guanyl-nucleotide exchange factor activity1.57E-02
124GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.68E-02
125GO:0005509: calcium ion binding1.74E-02
126GO:0005515: protein binding1.87E-02
127GO:0005315: inorganic phosphate transmembrane transporter activity1.90E-02
128GO:0050661: NADP binding1.92E-02
129GO:0004364: glutathione transferase activity2.09E-02
130GO:0004185: serine-type carboxypeptidase activity2.17E-02
131GO:0043621: protein self-association2.35E-02
132GO:0035091: phosphatidylinositol binding2.35E-02
133GO:0051536: iron-sulfur cluster binding2.61E-02
134GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.93E-02
135GO:0003690: double-stranded DNA binding3.04E-02
136GO:0004601: peroxidase activity3.13E-02
137GO:0022891: substrate-specific transmembrane transporter activity3.40E-02
138GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.58E-02
139GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.25E-02
140GO:0005355: glucose transmembrane transporter activity4.48E-02
141GO:0016853: isomerase activity4.48E-02
142GO:0020037: heme binding4.69E-02
143GO:0004872: receptor activity4.71E-02
144GO:0016762: xyloglucan:xyloglucosyl transferase activity4.94E-02
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Gene type



Gene DE type