GO Enrichment Analysis of Co-expressed Genes with
AT1G12500
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015843: methylammonium transport | 0.00E+00 |
| 2 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 3 | GO:0010422: regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 4 | GO:0009157: deoxyribonucleoside monophosphate biosynthetic process | 0.00E+00 |
| 5 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 6 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 7 | GO:0007172: signal complex assembly | 0.00E+00 |
| 8 | GO:0010068: protoderm histogenesis | 0.00E+00 |
| 9 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 10 | GO:0010480: microsporocyte differentiation | 0.00E+00 |
| 11 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.38E-07 |
| 12 | GO:0006468: protein phosphorylation | 1.13E-05 |
| 13 | GO:0030154: cell differentiation | 3.53E-05 |
| 14 | GO:0009934: regulation of meristem structural organization | 6.71E-05 |
| 15 | GO:0009734: auxin-activated signaling pathway | 1.93E-04 |
| 16 | GO:0048437: floral organ development | 2.42E-04 |
| 17 | GO:0006264: mitochondrial DNA replication | 3.02E-04 |
| 18 | GO:0043609: regulation of carbon utilization | 3.02E-04 |
| 19 | GO:0033259: plastid DNA replication | 3.02E-04 |
| 20 | GO:0046620: regulation of organ growth | 3.05E-04 |
| 21 | GO:0006002: fructose 6-phosphate metabolic process | 3.75E-04 |
| 22 | GO:0009638: phototropism | 5.34E-04 |
| 23 | GO:0009733: response to auxin | 6.49E-04 |
| 24 | GO:0010254: nectary development | 6.60E-04 |
| 25 | GO:0010434: bract formation | 6.60E-04 |
| 26 | GO:0048439: flower morphogenesis | 6.60E-04 |
| 27 | GO:0070981: L-asparagine biosynthetic process | 6.60E-04 |
| 28 | GO:0009786: regulation of asymmetric cell division | 6.60E-04 |
| 29 | GO:0031648: protein destabilization | 6.60E-04 |
| 30 | GO:0006529: asparagine biosynthetic process | 6.60E-04 |
| 31 | GO:0048229: gametophyte development | 7.19E-04 |
| 32 | GO:0010582: floral meristem determinacy | 8.22E-04 |
| 33 | GO:0010075: regulation of meristem growth | 9.29E-04 |
| 34 | GO:0009767: photosynthetic electron transport chain | 9.29E-04 |
| 35 | GO:0009954: proximal/distal pattern formation | 1.07E-03 |
| 36 | GO:0031022: nuclear migration along microfilament | 1.07E-03 |
| 37 | GO:0051127: positive regulation of actin nucleation | 1.07E-03 |
| 38 | GO:0006000: fructose metabolic process | 1.07E-03 |
| 39 | GO:0051604: protein maturation | 1.07E-03 |
| 40 | GO:0016050: vesicle organization | 1.07E-03 |
| 41 | GO:0090351: seedling development | 1.17E-03 |
| 42 | GO:0005992: trehalose biosynthetic process | 1.44E-03 |
| 43 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.44E-03 |
| 44 | GO:0051513: regulation of monopolar cell growth | 1.53E-03 |
| 45 | GO:0007231: osmosensory signaling pathway | 1.53E-03 |
| 46 | GO:0051639: actin filament network formation | 1.53E-03 |
| 47 | GO:0044211: CTP salvage | 1.53E-03 |
| 48 | GO:0019048: modulation by virus of host morphology or physiology | 1.53E-03 |
| 49 | GO:0031048: chromatin silencing by small RNA | 1.53E-03 |
| 50 | GO:0048645: animal organ formation | 1.53E-03 |
| 51 | GO:0015696: ammonium transport | 1.53E-03 |
| 52 | GO:0046739: transport of virus in multicellular host | 1.53E-03 |
| 53 | GO:2000904: regulation of starch metabolic process | 1.53E-03 |
| 54 | GO:0051289: protein homotetramerization | 1.53E-03 |
| 55 | GO:0009926: auxin polar transport | 1.63E-03 |
| 56 | GO:0007166: cell surface receptor signaling pathway | 1.81E-03 |
| 57 | GO:0051764: actin crosslink formation | 2.06E-03 |
| 58 | GO:0072488: ammonium transmembrane transport | 2.06E-03 |
| 59 | GO:0022622: root system development | 2.06E-03 |
| 60 | GO:0051567: histone H3-K9 methylation | 2.06E-03 |
| 61 | GO:0033500: carbohydrate homeostasis | 2.06E-03 |
| 62 | GO:0044206: UMP salvage | 2.06E-03 |
| 63 | GO:0044205: 'de novo' UMP biosynthetic process | 2.06E-03 |
| 64 | GO:0009165: nucleotide biosynthetic process | 2.06E-03 |
| 65 | GO:1902183: regulation of shoot apical meristem development | 2.63E-03 |
| 66 | GO:0010158: abaxial cell fate specification | 2.63E-03 |
| 67 | GO:0016131: brassinosteroid metabolic process | 2.63E-03 |
| 68 | GO:0006544: glycine metabolic process | 2.63E-03 |
| 69 | GO:0009904: chloroplast accumulation movement | 2.63E-03 |
| 70 | GO:0048653: anther development | 2.64E-03 |
| 71 | GO:0009646: response to absence of light | 3.05E-03 |
| 72 | GO:0009959: negative gravitropism | 3.24E-03 |
| 73 | GO:0045962: positive regulation of development, heterochronic | 3.24E-03 |
| 74 | GO:0006206: pyrimidine nucleobase metabolic process | 3.24E-03 |
| 75 | GO:0006655: phosphatidylglycerol biosynthetic process | 3.24E-03 |
| 76 | GO:0006139: nucleobase-containing compound metabolic process | 3.24E-03 |
| 77 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 3.24E-03 |
| 78 | GO:0042793: transcription from plastid promoter | 3.24E-03 |
| 79 | GO:0016458: gene silencing | 3.24E-03 |
| 80 | GO:0006563: L-serine metabolic process | 3.24E-03 |
| 81 | GO:0010405: arabinogalactan protein metabolic process | 3.24E-03 |
| 82 | GO:0009903: chloroplast avoidance movement | 3.90E-03 |
| 83 | GO:0030488: tRNA methylation | 3.90E-03 |
| 84 | GO:0016310: phosphorylation | 4.19E-03 |
| 85 | GO:0032880: regulation of protein localization | 4.60E-03 |
| 86 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 4.60E-03 |
| 87 | GO:0010161: red light signaling pathway | 4.60E-03 |
| 88 | GO:0009610: response to symbiotic fungus | 4.60E-03 |
| 89 | GO:0010050: vegetative phase change | 4.60E-03 |
| 90 | GO:0051607: defense response to virus | 4.78E-03 |
| 91 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 5.35E-03 |
| 92 | GO:0030162: regulation of proteolysis | 5.35E-03 |
| 93 | GO:0009850: auxin metabolic process | 5.35E-03 |
| 94 | GO:0009690: cytokinin metabolic process | 5.35E-03 |
| 95 | GO:0010099: regulation of photomorphogenesis | 6.13E-03 |
| 96 | GO:0009827: plant-type cell wall modification | 6.13E-03 |
| 97 | GO:0010497: plasmodesmata-mediated intercellular transport | 6.13E-03 |
| 98 | GO:0010100: negative regulation of photomorphogenesis | 6.13E-03 |
| 99 | GO:0006526: arginine biosynthetic process | 6.13E-03 |
| 100 | GO:0007389: pattern specification process | 6.13E-03 |
| 101 | GO:0030244: cellulose biosynthetic process | 6.61E-03 |
| 102 | GO:0000160: phosphorelay signal transduction system | 6.94E-03 |
| 103 | GO:0009051: pentose-phosphate shunt, oxidative branch | 6.95E-03 |
| 104 | GO:0051865: protein autoubiquitination | 6.95E-03 |
| 105 | GO:2000024: regulation of leaf development | 6.95E-03 |
| 106 | GO:0006783: heme biosynthetic process | 6.95E-03 |
| 107 | GO:0000373: Group II intron splicing | 6.95E-03 |
| 108 | GO:0000902: cell morphogenesis | 6.95E-03 |
| 109 | GO:0040008: regulation of growth | 7.06E-03 |
| 110 | GO:0035999: tetrahydrofolate interconversion | 7.80E-03 |
| 111 | GO:0031425: chloroplast RNA processing | 7.80E-03 |
| 112 | GO:0009299: mRNA transcription | 8.70E-03 |
| 113 | GO:0006535: cysteine biosynthetic process from serine | 8.70E-03 |
| 114 | GO:0030422: production of siRNA involved in RNA interference | 8.70E-03 |
| 115 | GO:0048829: root cap development | 8.70E-03 |
| 116 | GO:0006816: calcium ion transport | 9.63E-03 |
| 117 | GO:0009773: photosynthetic electron transport in photosystem I | 9.63E-03 |
| 118 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.06E-02 |
| 119 | GO:0045037: protein import into chloroplast stroma | 1.06E-02 |
| 120 | GO:0009725: response to hormone | 1.16E-02 |
| 121 | GO:2000012: regulation of auxin polar transport | 1.16E-02 |
| 122 | GO:0009785: blue light signaling pathway | 1.16E-02 |
| 123 | GO:0010628: positive regulation of gene expression | 1.16E-02 |
| 124 | GO:0006006: glucose metabolic process | 1.16E-02 |
| 125 | GO:0030036: actin cytoskeleton organization | 1.16E-02 |
| 126 | GO:0006541: glutamine metabolic process | 1.26E-02 |
| 127 | GO:0010030: positive regulation of seed germination | 1.37E-02 |
| 128 | GO:0070588: calcium ion transmembrane transport | 1.37E-02 |
| 129 | GO:0009736: cytokinin-activated signaling pathway | 1.46E-02 |
| 130 | GO:0006071: glycerol metabolic process | 1.48E-02 |
| 131 | GO:0009833: plant-type primary cell wall biogenesis | 1.48E-02 |
| 132 | GO:0009723: response to ethylene | 1.57E-02 |
| 133 | GO:0019344: cysteine biosynthetic process | 1.59E-02 |
| 134 | GO:0010187: negative regulation of seed germination | 1.59E-02 |
| 135 | GO:0051017: actin filament bundle assembly | 1.59E-02 |
| 136 | GO:0006825: copper ion transport | 1.71E-02 |
| 137 | GO:0080167: response to karrikin | 1.72E-02 |
| 138 | GO:0048367: shoot system development | 1.79E-02 |
| 139 | GO:0006306: DNA methylation | 1.82E-02 |
| 140 | GO:0046777: protein autophosphorylation | 1.87E-02 |
| 141 | GO:0006730: one-carbon metabolic process | 1.95E-02 |
| 142 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.95E-02 |
| 143 | GO:0009740: gibberellic acid mediated signaling pathway | 1.97E-02 |
| 144 | GO:0010227: floral organ abscission | 2.07E-02 |
| 145 | GO:0009686: gibberellin biosynthetic process | 2.07E-02 |
| 146 | GO:0010082: regulation of root meristem growth | 2.07E-02 |
| 147 | GO:0007165: signal transduction | 2.18E-02 |
| 148 | GO:0010214: seed coat development | 2.20E-02 |
| 149 | GO:0006284: base-excision repair | 2.20E-02 |
| 150 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.33E-02 |
| 151 | GO:0008284: positive regulation of cell proliferation | 2.33E-02 |
| 152 | GO:0042631: cellular response to water deprivation | 2.46E-02 |
| 153 | GO:0042335: cuticle development | 2.46E-02 |
| 154 | GO:0006342: chromatin silencing | 2.59E-02 |
| 155 | GO:0009958: positive gravitropism | 2.59E-02 |
| 156 | GO:0007018: microtubule-based movement | 2.73E-02 |
| 157 | GO:0009751: response to salicylic acid | 2.75E-02 |
| 158 | GO:0008654: phospholipid biosynthetic process | 2.87E-02 |
| 159 | GO:0048364: root development | 2.96E-02 |
| 160 | GO:0016132: brassinosteroid biosynthetic process | 3.01E-02 |
| 161 | GO:0071554: cell wall organization or biogenesis | 3.01E-02 |
| 162 | GO:0000302: response to reactive oxygen species | 3.01E-02 |
| 163 | GO:0032502: developmental process | 3.16E-02 |
| 164 | GO:0010583: response to cyclopentenone | 3.16E-02 |
| 165 | GO:0071281: cellular response to iron ion | 3.31E-02 |
| 166 | GO:0010252: auxin homeostasis | 3.46E-02 |
| 167 | GO:0010027: thylakoid membrane organization | 3.92E-02 |
| 168 | GO:0006357: regulation of transcription from RNA polymerase II promoter | 3.97E-02 |
| 169 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.03E-02 |
| 170 | GO:0010029: regulation of seed germination | 4.07E-02 |
| 171 | GO:0009816: defense response to bacterium, incompatible interaction | 4.07E-02 |
| 172 | GO:0015995: chlorophyll biosynthetic process | 4.40E-02 |
| 173 | GO:0006508: proteolysis | 4.45E-02 |
| 174 | GO:0009813: flavonoid biosynthetic process | 4.90E-02 |
| 175 | GO:0010311: lateral root formation | 4.90E-02 |
| 176 | GO:0009832: plant-type cell wall biogenesis | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070009: serine-type aminopeptidase activity | 0.00E+00 |
| 2 | GO:0019136: deoxynucleoside kinase activity | 0.00E+00 |
| 3 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 4 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 5 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 6 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 7 | GO:0004674: protein serine/threonine kinase activity | 3.27E-06 |
| 8 | GO:0016301: kinase activity | 8.68E-06 |
| 9 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 9.36E-05 |
| 10 | GO:0005524: ATP binding | 9.69E-05 |
| 11 | GO:0033612: receptor serine/threonine kinase binding | 1.48E-04 |
| 12 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.39E-04 |
| 13 | GO:0043621: protein self-association | 2.61E-04 |
| 14 | GO:0050139: nicotinate-N-glucosyltransferase activity | 3.02E-04 |
| 15 | GO:0004008: copper-exporting ATPase activity | 3.02E-04 |
| 16 | GO:0004071: aspartate-ammonia ligase activity | 3.02E-04 |
| 17 | GO:0010313: phytochrome binding | 3.02E-04 |
| 18 | GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 3.02E-04 |
| 19 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 3.02E-04 |
| 20 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.02E-04 |
| 21 | GO:0004805: trehalose-phosphatase activity | 6.23E-04 |
| 22 | GO:0043425: bHLH transcription factor binding | 6.60E-04 |
| 23 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 6.60E-04 |
| 24 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 6.60E-04 |
| 25 | GO:0050017: L-3-cyanoalanine synthase activity | 6.60E-04 |
| 26 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 7.19E-04 |
| 27 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 1.07E-03 |
| 28 | GO:0070330: aromatase activity | 1.07E-03 |
| 29 | GO:0035197: siRNA binding | 1.53E-03 |
| 30 | GO:0004845: uracil phosphoribosyltransferase activity | 2.06E-03 |
| 31 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.06E-03 |
| 32 | GO:0008409: 5'-3' exonuclease activity | 2.06E-03 |
| 33 | GO:0019199: transmembrane receptor protein kinase activity | 2.06E-03 |
| 34 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.63E-03 |
| 35 | GO:0004372: glycine hydroxymethyltransferase activity | 2.63E-03 |
| 36 | GO:0018685: alkane 1-monooxygenase activity | 2.63E-03 |
| 37 | GO:2001070: starch binding | 3.24E-03 |
| 38 | GO:0004605: phosphatidate cytidylyltransferase activity | 3.24E-03 |
| 39 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 3.24E-03 |
| 40 | GO:0008519: ammonium transmembrane transporter activity | 3.24E-03 |
| 41 | GO:0004672: protein kinase activity | 3.77E-03 |
| 42 | GO:0004124: cysteine synthase activity | 3.90E-03 |
| 43 | GO:0008195: phosphatidate phosphatase activity | 3.90E-03 |
| 44 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.90E-03 |
| 45 | GO:0004849: uridine kinase activity | 3.90E-03 |
| 46 | GO:0000156: phosphorelay response regulator activity | 3.99E-03 |
| 47 | GO:0051015: actin filament binding | 3.99E-03 |
| 48 | GO:0016759: cellulose synthase activity | 4.25E-03 |
| 49 | GO:0003872: 6-phosphofructokinase activity | 4.60E-03 |
| 50 | GO:0004252: serine-type endopeptidase activity | 5.68E-03 |
| 51 | GO:0005375: copper ion transmembrane transporter activity | 6.13E-03 |
| 52 | GO:0008173: RNA methyltransferase activity | 6.13E-03 |
| 53 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 6.95E-03 |
| 54 | GO:0009672: auxin:proton symporter activity | 7.80E-03 |
| 55 | GO:0004713: protein tyrosine kinase activity | 8.70E-03 |
| 56 | GO:0004521: endoribonuclease activity | 1.06E-02 |
| 57 | GO:0031072: heat shock protein binding | 1.16E-02 |
| 58 | GO:0005262: calcium channel activity | 1.16E-02 |
| 59 | GO:0010329: auxin efflux transmembrane transporter activity | 1.16E-02 |
| 60 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 1.16E-02 |
| 61 | GO:0004089: carbonate dehydratase activity | 1.16E-02 |
| 62 | GO:0008083: growth factor activity | 1.26E-02 |
| 63 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.26E-02 |
| 64 | GO:0003887: DNA-directed DNA polymerase activity | 1.48E-02 |
| 65 | GO:0044212: transcription regulatory region DNA binding | 1.65E-02 |
| 66 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.71E-02 |
| 67 | GO:0005515: protein binding | 1.71E-02 |
| 68 | GO:0016760: cellulose synthase (UDP-forming) activity | 2.07E-02 |
| 69 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 2.16E-02 |
| 70 | GO:0003727: single-stranded RNA binding | 2.20E-02 |
| 71 | GO:0004871: signal transducer activity | 2.29E-02 |
| 72 | GO:0042803: protein homodimerization activity | 2.29E-02 |
| 73 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 2.47E-02 |
| 74 | GO:0030246: carbohydrate binding | 2.67E-02 |
| 75 | GO:0010181: FMN binding | 2.73E-02 |
| 76 | GO:0050662: coenzyme binding | 2.73E-02 |
| 77 | GO:0030170: pyridoxal phosphate binding | 2.90E-02 |
| 78 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 3.61E-02 |
| 79 | GO:0016413: O-acetyltransferase activity | 3.76E-02 |
| 80 | GO:0008236: serine-type peptidase activity | 4.56E-02 |
| 81 | GO:0015238: drug transmembrane transporter activity | 4.90E-02 |