GO Enrichment Analysis of Co-expressed Genes with
AT1G12460
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 2 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 3 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 4 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 5 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 6 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 7 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 8 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 9 | GO:0080127: fruit septum development | 0.00E+00 |
| 10 | GO:0046486: glycerolipid metabolic process | 0.00E+00 |
| 11 | GO:0042127: regulation of cell proliferation | 2.02E-05 |
| 12 | GO:0006518: peptide metabolic process | 2.13E-05 |
| 13 | GO:0045037: protein import into chloroplast stroma | 7.05E-05 |
| 14 | GO:0006364: rRNA processing | 7.85E-05 |
| 15 | GO:0006479: protein methylation | 8.29E-05 |
| 16 | GO:0048497: maintenance of floral organ identity | 1.30E-04 |
| 17 | GO:0009913: epidermal cell differentiation | 1.86E-04 |
| 18 | GO:0042793: transcription from plastid promoter | 1.86E-04 |
| 19 | GO:0006401: RNA catabolic process | 3.27E-04 |
| 20 | GO:0034757: negative regulation of iron ion transport | 3.67E-04 |
| 21 | GO:0000025: maltose catabolic process | 3.67E-04 |
| 22 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 3.67E-04 |
| 23 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 3.67E-04 |
| 24 | GO:0080112: seed growth | 3.67E-04 |
| 25 | GO:0048598: embryonic morphogenesis | 3.67E-04 |
| 26 | GO:1903866: palisade mesophyll development | 3.67E-04 |
| 27 | GO:1905039: carboxylic acid transmembrane transport | 3.67E-04 |
| 28 | GO:1905200: gibberellic acid transmembrane transport | 3.67E-04 |
| 29 | GO:0010063: positive regulation of trichoblast fate specification | 3.67E-04 |
| 30 | GO:0090063: positive regulation of microtubule nucleation | 3.67E-04 |
| 31 | GO:0033206: meiotic cytokinesis | 3.67E-04 |
| 32 | GO:0080156: mitochondrial mRNA modification | 5.72E-04 |
| 33 | GO:1900865: chloroplast RNA modification | 7.09E-04 |
| 34 | GO:0009828: plant-type cell wall loosening | 7.30E-04 |
| 35 | GO:0080009: mRNA methylation | 8.00E-04 |
| 36 | GO:1901529: positive regulation of anion channel activity | 8.00E-04 |
| 37 | GO:0033566: gamma-tubulin complex localization | 8.00E-04 |
| 38 | GO:0009967: positive regulation of signal transduction | 8.00E-04 |
| 39 | GO:0019374: galactolipid metabolic process | 8.00E-04 |
| 40 | GO:0010569: regulation of double-strand break repair via homologous recombination | 8.00E-04 |
| 41 | GO:0048731: system development | 8.00E-04 |
| 42 | GO:0006650: glycerophospholipid metabolic process | 8.00E-04 |
| 43 | GO:0010271: regulation of chlorophyll catabolic process | 8.00E-04 |
| 44 | GO:0009662: etioplast organization | 8.00E-04 |
| 45 | GO:0045036: protein targeting to chloroplast | 8.26E-04 |
| 46 | GO:0016441: posttranscriptional gene silencing | 8.26E-04 |
| 47 | GO:0006949: syncytium formation | 8.26E-04 |
| 48 | GO:0009658: chloroplast organization | 1.02E-03 |
| 49 | GO:0009793: embryo development ending in seed dormancy | 1.02E-03 |
| 50 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 1.29E-03 |
| 51 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 1.29E-03 |
| 52 | GO:0046168: glycerol-3-phosphate catabolic process | 1.29E-03 |
| 53 | GO:0080117: secondary growth | 1.29E-03 |
| 54 | GO:0044210: 'de novo' CTP biosynthetic process | 1.29E-03 |
| 55 | GO:0090391: granum assembly | 1.29E-03 |
| 56 | GO:0042780: tRNA 3'-end processing | 1.29E-03 |
| 57 | GO:0001578: microtubule bundle formation | 1.29E-03 |
| 58 | GO:0045017: glycerolipid biosynthetic process | 1.87E-03 |
| 59 | GO:0010371: regulation of gibberellin biosynthetic process | 1.87E-03 |
| 60 | GO:0010071: root meristem specification | 1.87E-03 |
| 61 | GO:0033169: histone H3-K9 demethylation | 1.87E-03 |
| 62 | GO:0009102: biotin biosynthetic process | 1.87E-03 |
| 63 | GO:0010239: chloroplast mRNA processing | 1.87E-03 |
| 64 | GO:0007276: gamete generation | 1.87E-03 |
| 65 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 1.87E-03 |
| 66 | GO:0006072: glycerol-3-phosphate metabolic process | 1.87E-03 |
| 67 | GO:0010306: rhamnogalacturonan II biosynthetic process | 1.87E-03 |
| 68 | GO:0006808: regulation of nitrogen utilization | 2.51E-03 |
| 69 | GO:1900864: mitochondrial RNA modification | 2.51E-03 |
| 70 | GO:0051322: anaphase | 2.51E-03 |
| 71 | GO:0006221: pyrimidine nucleotide biosynthetic process | 2.51E-03 |
| 72 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.77E-03 |
| 73 | GO:0071215: cellular response to abscisic acid stimulus | 2.77E-03 |
| 74 | GO:0009664: plant-type cell wall organization | 3.16E-03 |
| 75 | GO:0016123: xanthophyll biosynthetic process | 3.21E-03 |
| 76 | GO:0009247: glycolipid biosynthetic process | 3.21E-03 |
| 77 | GO:0016120: carotene biosynthetic process | 3.21E-03 |
| 78 | GO:0010087: phloem or xylem histogenesis | 3.53E-03 |
| 79 | GO:0008033: tRNA processing | 3.53E-03 |
| 80 | GO:0010501: RNA secondary structure unwinding | 3.53E-03 |
| 81 | GO:0010305: leaf vascular tissue pattern formation | 3.80E-03 |
| 82 | GO:0016554: cytidine to uridine editing | 3.96E-03 |
| 83 | GO:1902456: regulation of stomatal opening | 3.96E-03 |
| 84 | GO:0048831: regulation of shoot system development | 3.96E-03 |
| 85 | GO:0003006: developmental process involved in reproduction | 3.96E-03 |
| 86 | GO:0009643: photosynthetic acclimation | 3.96E-03 |
| 87 | GO:0006014: D-ribose metabolic process | 3.96E-03 |
| 88 | GO:0009733: response to auxin | 4.02E-03 |
| 89 | GO:0048825: cotyledon development | 4.39E-03 |
| 90 | GO:0048367: shoot system development | 4.47E-03 |
| 91 | GO:0010310: regulation of hydrogen peroxide metabolic process | 4.78E-03 |
| 92 | GO:2000033: regulation of seed dormancy process | 4.78E-03 |
| 93 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.78E-03 |
| 94 | GO:0048509: regulation of meristem development | 4.78E-03 |
| 95 | GO:0010583: response to cyclopentenone | 5.02E-03 |
| 96 | GO:0010103: stomatal complex morphogenesis | 5.64E-03 |
| 97 | GO:1900056: negative regulation of leaf senescence | 5.64E-03 |
| 98 | GO:0048437: floral organ development | 5.64E-03 |
| 99 | GO:0000082: G1/S transition of mitotic cell cycle | 5.64E-03 |
| 100 | GO:0010444: guard mother cell differentiation | 5.64E-03 |
| 101 | GO:0010492: maintenance of shoot apical meristem identity | 6.56E-03 |
| 102 | GO:0052543: callose deposition in cell wall | 6.56E-03 |
| 103 | GO:0009642: response to light intensity | 6.56E-03 |
| 104 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 6.56E-03 |
| 105 | GO:0006402: mRNA catabolic process | 6.56E-03 |
| 106 | GO:0046620: regulation of organ growth | 6.56E-03 |
| 107 | GO:0006353: DNA-templated transcription, termination | 6.56E-03 |
| 108 | GO:0019375: galactolipid biosynthetic process | 6.56E-03 |
| 109 | GO:0010029: regulation of seed germination | 7.19E-03 |
| 110 | GO:0009827: plant-type cell wall modification | 7.52E-03 |
| 111 | GO:0019430: removal of superoxide radicals | 7.52E-03 |
| 112 | GO:0010233: phloem transport | 7.52E-03 |
| 113 | GO:0010497: plasmodesmata-mediated intercellular transport | 7.52E-03 |
| 114 | GO:0032544: plastid translation | 7.52E-03 |
| 115 | GO:0007389: pattern specification process | 7.52E-03 |
| 116 | GO:0009845: seed germination | 8.00E-03 |
| 117 | GO:0000902: cell morphogenesis | 8.54E-03 |
| 118 | GO:0048507: meristem development | 8.54E-03 |
| 119 | GO:0000373: Group II intron splicing | 8.54E-03 |
| 120 | GO:0048589: developmental growth | 8.54E-03 |
| 121 | GO:0048481: plant ovule development | 8.88E-03 |
| 122 | GO:0006349: regulation of gene expression by genetic imprinting | 9.60E-03 |
| 123 | GO:0031425: chloroplast RNA processing | 9.60E-03 |
| 124 | GO:0048829: root cap development | 1.07E-02 |
| 125 | GO:0010048: vernalization response | 1.07E-02 |
| 126 | GO:0006535: cysteine biosynthetic process from serine | 1.07E-02 |
| 127 | GO:0009451: RNA modification | 1.12E-02 |
| 128 | GO:0016485: protein processing | 1.19E-02 |
| 129 | GO:0048229: gametophyte development | 1.19E-02 |
| 130 | GO:0048765: root hair cell differentiation | 1.19E-02 |
| 131 | GO:0015770: sucrose transport | 1.19E-02 |
| 132 | GO:1903507: negative regulation of nucleic acid-templated transcription | 1.19E-02 |
| 133 | GO:0009750: response to fructose | 1.19E-02 |
| 134 | GO:0006397: mRNA processing | 1.20E-02 |
| 135 | GO:0012501: programmed cell death | 1.31E-02 |
| 136 | GO:0005983: starch catabolic process | 1.31E-02 |
| 137 | GO:0010152: pollen maturation | 1.31E-02 |
| 138 | GO:0010582: floral meristem determinacy | 1.31E-02 |
| 139 | GO:0010588: cotyledon vascular tissue pattern formation | 1.43E-02 |
| 140 | GO:0010102: lateral root morphogenesis | 1.43E-02 |
| 141 | GO:0006006: glucose metabolic process | 1.43E-02 |
| 142 | GO:0009744: response to sucrose | 1.46E-02 |
| 143 | GO:0009887: animal organ morphogenesis | 1.56E-02 |
| 144 | GO:0048467: gynoecium development | 1.56E-02 |
| 145 | GO:0010020: chloroplast fission | 1.56E-02 |
| 146 | GO:0080188: RNA-directed DNA methylation | 1.69E-02 |
| 147 | GO:0009901: anther dehiscence | 1.69E-02 |
| 148 | GO:0009826: unidimensional cell growth | 1.81E-02 |
| 149 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.82E-02 |
| 150 | GO:0009734: auxin-activated signaling pathway | 1.89E-02 |
| 151 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.96E-02 |
| 152 | GO:0019344: cysteine biosynthetic process | 1.96E-02 |
| 153 | GO:0009863: salicylic acid mediated signaling pathway | 1.96E-02 |
| 154 | GO:0010187: negative regulation of seed germination | 1.96E-02 |
| 155 | GO:0019953: sexual reproduction | 2.11E-02 |
| 156 | GO:0010431: seed maturation | 2.25E-02 |
| 157 | GO:0003333: amino acid transmembrane transport | 2.25E-02 |
| 158 | GO:0030245: cellulose catabolic process | 2.40E-02 |
| 159 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 2.40E-02 |
| 160 | GO:0009740: gibberellic acid mediated signaling pathway | 2.64E-02 |
| 161 | GO:0048443: stamen development | 2.71E-02 |
| 162 | GO:0010091: trichome branching | 2.71E-02 |
| 163 | GO:0070417: cellular response to cold | 2.87E-02 |
| 164 | GO:0006396: RNA processing | 2.89E-02 |
| 165 | GO:0051726: regulation of cell cycle | 2.98E-02 |
| 166 | GO:0010118: stomatal movement | 3.04E-02 |
| 167 | GO:0000226: microtubule cytoskeleton organization | 3.04E-02 |
| 168 | GO:0042335: cuticle development | 3.04E-02 |
| 169 | GO:0080022: primary root development | 3.04E-02 |
| 170 | GO:0048868: pollen tube development | 3.20E-02 |
| 171 | GO:0009741: response to brassinosteroid | 3.20E-02 |
| 172 | GO:0009960: endosperm development | 3.20E-02 |
| 173 | GO:0045893: positive regulation of transcription, DNA-templated | 3.26E-02 |
| 174 | GO:0048544: recognition of pollen | 3.37E-02 |
| 175 | GO:0008654: phospholipid biosynthetic process | 3.55E-02 |
| 176 | GO:0009851: auxin biosynthetic process | 3.55E-02 |
| 177 | GO:0009749: response to glucose | 3.55E-02 |
| 178 | GO:0019252: starch biosynthetic process | 3.55E-02 |
| 179 | GO:0007165: signal transduction | 3.77E-02 |
| 180 | GO:0031047: gene silencing by RNA | 3.90E-02 |
| 181 | GO:0030163: protein catabolic process | 4.08E-02 |
| 182 | GO:0019760: glucosinolate metabolic process | 4.27E-02 |
| 183 | GO:0071805: potassium ion transmembrane transport | 4.45E-02 |
| 184 | GO:0016036: cellular response to phosphate starvation | 4.51E-02 |
| 185 | GO:0040008: regulation of growth | 4.61E-02 |
| 186 | GO:0000910: cytokinesis | 4.64E-02 |
| 187 | GO:0045490: pectin catabolic process | 4.83E-02 |
| 188 | GO:0010027: thylakoid membrane organization | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 2 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 3 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 4 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 5 | GO:0071633: dihydroceramidase activity | 0.00E+00 |
| 6 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 7 | GO:0003723: RNA binding | 1.25E-06 |
| 8 | GO:0004519: endonuclease activity | 2.12E-04 |
| 9 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 3.67E-04 |
| 10 | GO:0004016: adenylate cyclase activity | 3.67E-04 |
| 11 | GO:1905201: gibberellin transmembrane transporter activity | 3.67E-04 |
| 12 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 3.67E-04 |
| 13 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 3.67E-04 |
| 14 | GO:0004134: 4-alpha-glucanotransferase activity | 3.67E-04 |
| 15 | GO:0016274: protein-arginine N-methyltransferase activity | 3.67E-04 |
| 16 | GO:0008173: RNA methyltransferase activity | 5.01E-04 |
| 17 | GO:0042389: omega-3 fatty acid desaturase activity | 8.00E-04 |
| 18 | GO:0004809: tRNA (guanine-N2-)-methyltransferase activity | 8.00E-04 |
| 19 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 8.00E-04 |
| 20 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 8.00E-04 |
| 21 | GO:0005078: MAP-kinase scaffold activity | 8.00E-04 |
| 22 | GO:0009884: cytokinin receptor activity | 8.00E-04 |
| 23 | GO:0032454: histone demethylase activity (H3-K9 specific) | 8.00E-04 |
| 24 | GO:0000175: 3'-5'-exoribonuclease activity | 1.23E-03 |
| 25 | GO:0005034: osmosensor activity | 1.29E-03 |
| 26 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 1.29E-03 |
| 27 | GO:0017150: tRNA dihydrouridine synthase activity | 1.29E-03 |
| 28 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 1.29E-03 |
| 29 | GO:0004222: metalloendopeptidase activity | 1.44E-03 |
| 30 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.72E-03 |
| 31 | GO:0009041: uridylate kinase activity | 1.87E-03 |
| 32 | GO:0003883: CTP synthase activity | 1.87E-03 |
| 33 | GO:0010011: auxin binding | 2.51E-03 |
| 34 | GO:0010328: auxin influx transmembrane transporter activity | 2.51E-03 |
| 35 | GO:0004930: G-protein coupled receptor activity | 2.51E-03 |
| 36 | GO:0030570: pectate lyase activity | 2.77E-03 |
| 37 | GO:0004888: transmembrane signaling receptor activity | 3.21E-03 |
| 38 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 3.80E-03 |
| 39 | GO:0001085: RNA polymerase II transcription factor binding | 3.80E-03 |
| 40 | GO:0003968: RNA-directed 5'-3' RNA polymerase activity | 3.96E-03 |
| 41 | GO:0004784: superoxide dismutase activity | 3.96E-03 |
| 42 | GO:0008168: methyltransferase activity | 4.25E-03 |
| 43 | GO:0019900: kinase binding | 4.78E-03 |
| 44 | GO:0004124: cysteine synthase activity | 4.78E-03 |
| 45 | GO:0004747: ribokinase activity | 4.78E-03 |
| 46 | GO:0008289: lipid binding | 5.30E-03 |
| 47 | GO:0008026: ATP-dependent helicase activity | 5.85E-03 |
| 48 | GO:0008865: fructokinase activity | 6.56E-03 |
| 49 | GO:0003724: RNA helicase activity | 7.52E-03 |
| 50 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 7.52E-03 |
| 51 | GO:0004004: ATP-dependent RNA helicase activity | 8.01E-03 |
| 52 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 8.54E-03 |
| 53 | GO:0000989: transcription factor activity, transcription factor binding | 8.54E-03 |
| 54 | GO:0043565: sequence-specific DNA binding | 8.88E-03 |
| 55 | GO:0031490: chromatin DNA binding | 9.60E-03 |
| 56 | GO:0005515: protein binding | 9.68E-03 |
| 57 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.03E-02 |
| 58 | GO:0004673: protein histidine kinase activity | 1.07E-02 |
| 59 | GO:0008515: sucrose transmembrane transporter activity | 1.19E-02 |
| 60 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 1.31E-02 |
| 61 | GO:0000155: phosphorelay sensor kinase activity | 1.43E-02 |
| 62 | GO:0003725: double-stranded RNA binding | 1.43E-02 |
| 63 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.51E-02 |
| 64 | GO:0004190: aspartic-type endopeptidase activity | 1.69E-02 |
| 65 | GO:0051119: sugar transmembrane transporter activity | 1.69E-02 |
| 66 | GO:0003714: transcription corepressor activity | 1.96E-02 |
| 67 | GO:0043424: protein histidine kinase binding | 2.11E-02 |
| 68 | GO:0015079: potassium ion transmembrane transporter activity | 2.11E-02 |
| 69 | GO:0004540: ribonuclease activity | 2.25E-02 |
| 70 | GO:0008810: cellulase activity | 2.56E-02 |
| 71 | GO:0003727: single-stranded RNA binding | 2.71E-02 |
| 72 | GO:0003779: actin binding | 2.72E-02 |
| 73 | GO:0003676: nucleic acid binding | 2.72E-02 |
| 74 | GO:0005102: receptor binding | 2.87E-02 |
| 75 | GO:0018024: histone-lysine N-methyltransferase activity | 2.87E-02 |
| 76 | GO:0004386: helicase activity | 3.06E-02 |
| 77 | GO:0019843: rRNA binding | 3.51E-02 |
| 78 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.61E-02 |
| 79 | GO:0030170: pyridoxal phosphate binding | 3.89E-02 |
| 80 | GO:0016791: phosphatase activity | 4.27E-02 |
| 81 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 4.45E-02 |
| 82 | GO:0008237: metallopeptidase activity | 4.45E-02 |
| 83 | GO:0005200: structural constituent of cytoskeleton | 4.45E-02 |
| 84 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.51E-02 |