co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G12250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
3	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
4	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
5	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
6	GO:0015979: photosynthesis	2.32E-15
7	GO:0015995: chlorophyll biosynthetic process	9.35E-09
8	GO:0009773: photosynthetic electron transport in photosystem I	1.57E-08
9	GO:0090391: granum assembly	4.31E-08
10	GO:0010207: photosystem II assembly	5.13E-08
11	GO:0009768: photosynthesis, light harvesting in photosystem I	1.82E-07
12	GO:0032544: plastid translation	2.20E-07
13	GO:0055114: oxidation-reduction process	8.49E-07
14	GO:0006094: gluconeogenesis	2.13E-06
15	GO:0019253: reductive pentose-phosphate cycle	2.83E-06
16	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.29E-06
17	GO:0010196: nonphotochemical quenching	7.28E-06
18	GO:0018298: protein-chromophore linkage	9.39E-06
19	GO:0009735: response to cytokinin	1.55E-05
20	GO:0006000: fructose metabolic process	1.87E-05
21	GO:0010114: response to red light	3.12E-05
22	GO:0006546: glycine catabolic process	7.33E-05
23	GO:0010600: regulation of auxin biosynthetic process	7.33E-05
24	GO:0006636: unsaturated fatty acid biosynthetic process	1.24E-04
25	GO:0010218: response to far red light	1.60E-04
26	GO:0009658: chloroplast organization	1.67E-04
27	GO:0006810: transport	1.95E-04
28	GO:0009637: response to blue light	2.03E-04
29	GO:0034599: cellular response to oxidative stress	2.19E-04
30	GO:0009854: oxidative photosynthetic carbon pathway	2.25E-04
31	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.25E-04
32	GO:0009645: response to low light intensity stimulus	2.93E-04
33	GO:0043953: protein transport by the Tat complex	3.42E-04
34	GO:0030974: thiamine pyrophosphate transport	3.42E-04
35	GO:0046467: membrane lipid biosynthetic process	3.42E-04
36	GO:0071277: cellular response to calcium ion	3.42E-04
37	GO:0065002: intracellular protein transmembrane transport	3.42E-04
38	GO:0080093: regulation of photorespiration	3.42E-04
39	GO:0031998: regulation of fatty acid beta-oxidation	3.42E-04
40	GO:0034337: RNA folding	3.42E-04
41	GO:0019510: S-adenosylhomocysteine catabolic process	3.42E-04
42	GO:0051180: vitamin transport	3.42E-04
43	GO:0009704: de-etiolation	3.67E-04
44	GO:0010928: regulation of auxin mediated signaling pathway	3.67E-04
45	GO:0006662: glycerol ether metabolic process	3.79E-04
46	GO:0006002: fructose 6-phosphate metabolic process	4.51E-04
47	GO:0006754: ATP biosynthetic process	5.41E-04
48	GO:0006096: glycolytic process	6.45E-04
49	GO:0033353: S-adenosylmethionine cycle	7.45E-04
50	GO:0015893: drug transport	7.45E-04
51	GO:0008616: queuosine biosynthetic process	7.45E-04
52	GO:0010027: thylakoid membrane organization	7.97E-04
53	GO:0018119: peptidyl-cysteine S-nitrosylation	8.59E-04
54	GO:0009767: photosynthetic electron transport chain	1.11E-03
55	GO:0005986: sucrose biosynthetic process	1.11E-03
56	GO:0006518: peptide metabolic process	1.21E-03
57	GO:0044375: regulation of peroxisome size	1.21E-03
58	GO:0006081: cellular aldehyde metabolic process	1.21E-03
59	GO:0007031: peroxisome organization	1.39E-03
60	GO:0010731: protein glutathionylation	1.74E-03
61	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.74E-03
62	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.74E-03
63	GO:0071484: cellular response to light intensity	1.74E-03
64	GO:0032259: methylation	2.27E-03
65	GO:0015976: carbon utilization	2.33E-03
66	GO:0015689: molybdate ion transport	2.33E-03
67	GO:0019464: glycine decarboxylation via glycine cleavage system	2.33E-03
68	GO:0009765: photosynthesis, light harvesting	2.33E-03
69	GO:0006109: regulation of carbohydrate metabolic process	2.33E-03
70	GO:0045727: positive regulation of translation	2.33E-03
71	GO:0015994: chlorophyll metabolic process	2.33E-03
72	GO:0006656: phosphatidylcholine biosynthetic process	2.98E-03
73	GO:0043097: pyrimidine nucleoside salvage	2.98E-03
74	GO:0006097: glyoxylate cycle	2.98E-03
75	GO:0009107: lipoate biosynthetic process	2.98E-03
76	GO:0042631: cellular response to water deprivation	3.17E-03
77	GO:0006206: pyrimidine nucleobase metabolic process	3.68E-03
78	GO:0010190: cytochrome b6f complex assembly	3.68E-03
79	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.68E-03
80	GO:0050665: hydrogen peroxide biosynthetic process	3.68E-03
81	GO:0042549: photosystem II stabilization	3.68E-03
82	GO:0043086: negative regulation of catalytic activity	3.73E-03
83	GO:0045926: negative regulation of growth	4.43E-03
84	GO:1901259: chloroplast rRNA processing	4.43E-03
85	GO:0010189: vitamin E biosynthetic process	4.43E-03
86	GO:1900057: positive regulation of leaf senescence	5.23E-03
87	GO:0010161: red light signaling pathway	5.23E-03
88	GO:0009772: photosynthetic electron transport in photosystem II	5.23E-03
89	GO:0009642: response to light intensity	6.08E-03
90	GO:0016559: peroxisome fission	6.08E-03
91	GO:0045454: cell redox homeostasis	6.96E-03
92	GO:0009657: plastid organization	6.98E-03
93	GO:0006526: arginine biosynthetic process	6.98E-03
94	GO:0071482: cellular response to light stimulus	6.98E-03
95	GO:0042742: defense response to bacterium	7.61E-03
96	GO:0010206: photosystem II repair	7.91E-03
97	GO:0090333: regulation of stomatal closure	7.91E-03
98	GO:0006783: heme biosynthetic process	7.91E-03
99	GO:0006098: pentose-phosphate shunt	7.91E-03
100	GO:0010205: photoinhibition	8.89E-03
101	GO:0006779: porphyrin-containing compound biosynthetic process	8.89E-03
102	GO:0042761: very long-chain fatty acid biosynthetic process	8.89E-03
103	GO:0006782: protoporphyrinogen IX biosynthetic process	9.92E-03
104	GO:0009853: photorespiration	1.01E-02
105	GO:0043085: positive regulation of catalytic activity	1.10E-02
106	GO:0000272: polysaccharide catabolic process	1.10E-02
107	GO:0009698: phenylpropanoid metabolic process	1.10E-02
108	GO:0019684: photosynthesis, light reaction	1.10E-02
109	GO:0006108: malate metabolic process	1.32E-02
110	GO:0006006: glucose metabolic process	1.32E-02
111	GO:0018107: peptidyl-threonine phosphorylation	1.32E-02
112	GO:0009725: response to hormone	1.32E-02
113	GO:0009409: response to cold	1.37E-02
114	GO:0009644: response to high light intensity	1.41E-02
115	GO:0005985: sucrose metabolic process	1.56E-02
116	GO:0019762: glucosinolate catabolic process	1.69E-02
117	GO:0005975: carbohydrate metabolic process	1.71E-02
118	GO:0006364: rRNA processing	1.77E-02
119	GO:0009585: red, far-red light phototransduction	1.77E-02
120	GO:0031408: oxylipin biosynthetic process	2.08E-02
121	GO:0061077: chaperone-mediated protein folding	2.08E-02
122	GO:0080167: response to karrikin	2.17E-02
123	GO:0016226: iron-sulfur cluster assembly	2.22E-02
124	GO:0006730: one-carbon metabolic process	2.22E-02
125	GO:0030433: ubiquitin-dependent ERAD pathway	2.22E-02
126	GO:0007005: mitochondrion organization	2.22E-02
127	GO:0019748: secondary metabolic process	2.22E-02
128	GO:0030245: cellulose catabolic process	2.22E-02
129	GO:0010017: red or far-red light signaling pathway	2.22E-02
130	GO:0009693: ethylene biosynthetic process	2.37E-02
131	GO:0009411: response to UV	2.37E-02
132	GO:0009625: response to insect	2.37E-02
133	GO:0019722: calcium-mediated signaling	2.51E-02
134	GO:0009306: protein secretion	2.51E-02
135	GO:0006817: phosphate ion transport	2.51E-02
136	GO:0006396: RNA processing	2.59E-02
137	GO:0006606: protein import into nucleus	2.81E-02
138	GO:0006520: cellular amino acid metabolic process	2.96E-02
139	GO:0048868: pollen tube development	2.96E-02
140	GO:0009741: response to brassinosteroid	2.96E-02
141	GO:0015986: ATP synthesis coupled proton transport	3.12E-02
142	GO:0006814: sodium ion transport	3.12E-02
143	GO:0019252: starch biosynthetic process	3.28E-02
144	GO:0019761: glucosinolate biosynthetic process	3.61E-02
145	GO:0010583: response to cyclopentenone	3.61E-02
146	GO:0009567: double fertilization forming a zygote and endosperm	3.95E-02
147	GO:0007267: cell-cell signaling	4.12E-02
148	GO:0007623: circadian rhythm	4.34E-02
149	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.65E-02
150	GO:0046686: response to cadmium ion	4.70E-02
151	GO:0042128: nitrate assimilation	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
5	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
6	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
7	GO:0008974: phosphoribulokinase activity	0.00E+00
8	GO:0008465: glycerate dehydrogenase activity	0.00E+00
9	GO:0046408: chlorophyll synthetase activity	0.00E+00
10	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
11	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
12	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
13	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
14	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
15	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
16	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
17	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
18	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
19	GO:0090711: FMN hydrolase activity	0.00E+00
20	GO:0031409: pigment binding	1.00E-07
21	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.29E-06
22	GO:0018708: thiol S-methyltransferase activity	5.29E-06
23	GO:0016168: chlorophyll binding	5.46E-06
24	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.87E-05
25	GO:0016491: oxidoreductase activity	3.10E-05
26	GO:0016851: magnesium chelatase activity	4.12E-05
27	GO:0031072: heat shock protein binding	7.32E-05
28	GO:0004332: fructose-bisphosphate aldolase activity	1.66E-04
29	GO:0019843: rRNA binding	2.09E-04
30	GO:0047134: protein-disulfide reductase activity	3.09E-04
31	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.42E-04
32	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.42E-04
33	GO:0004451: isocitrate lyase activity	3.42E-04
34	GO:0090422: thiamine pyrophosphate transporter activity	3.42E-04
35	GO:0004013: adenosylhomocysteinase activity	3.42E-04
36	GO:0004791: thioredoxin-disulfide reductase activity	4.17E-04
37	GO:0051287: NAD binding	4.21E-04
38	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.51E-04
39	GO:0048038: quinone binding	4.99E-04
40	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.89E-04
41	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.45E-04
42	GO:0004802: transketolase activity	7.45E-04
43	GO:0000234: phosphoethanolamine N-methyltransferase activity	7.45E-04
44	GO:0008883: glutamyl-tRNA reductase activity	7.45E-04
45	GO:0047746: chlorophyllase activity	7.45E-04
46	GO:0030234: enzyme regulator activity	7.45E-04
47	GO:0010297: heteropolysaccharide binding	7.45E-04
48	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.45E-04
49	GO:0004047: aminomethyltransferase activity	7.45E-04
50	GO:0008479: queuine tRNA-ribosyltransferase activity	7.45E-04
51	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.45E-04
52	GO:0004565: beta-galactosidase activity	1.11E-03
53	GO:0005315: inorganic phosphate transmembrane transporter activity	1.11E-03
54	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	1.21E-03
55	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.21E-03
56	GO:0016992: lipoate synthase activity	1.21E-03
57	GO:0008266: poly(U) RNA binding	1.25E-03
58	GO:0005528: FK506 binding	1.72E-03
59	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.74E-03
60	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.74E-03
61	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.74E-03
62	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.74E-03
63	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.74E-03
64	GO:0051537: 2 iron, 2 sulfur cluster binding	2.28E-03
65	GO:0052793: pectin acetylesterase activity	2.33E-03
66	GO:0015098: molybdate ion transmembrane transporter activity	2.33E-03
67	GO:0008891: glycolate oxidase activity	2.33E-03
68	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.33E-03
69	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.33E-03
70	GO:0008453: alanine-glyoxylate transaminase activity	2.33E-03
71	GO:0008168: methyltransferase activity	3.60E-03
72	GO:0004029: aldehyde dehydrogenase (NAD) activity	3.68E-03
73	GO:0042578: phosphoric ester hydrolase activity	3.68E-03
74	GO:0016615: malate dehydrogenase activity	3.68E-03
75	GO:0004849: uridine kinase activity	4.43E-03
76	GO:0030060: L-malate dehydrogenase activity	4.43E-03
77	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.43E-03
78	GO:0051082: unfolded protein binding	4.73E-03
79	GO:0015035: protein disulfide oxidoreductase activity	4.91E-03
80	GO:0004033: aldo-keto reductase (NADP) activity	6.08E-03
81	GO:0071949: FAD binding	7.91E-03
82	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	7.91E-03
83	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	8.89E-03
84	GO:0008047: enzyme activator activity	9.92E-03
85	GO:0009055: electron carrier activity	1.06E-02
86	GO:0003735: structural constituent of ribosome	1.09E-02
87	GO:0050661: NADP binding	1.15E-02
88	GO:0042802: identical protein binding	1.29E-02
89	GO:0004185: serine-type carboxypeptidase activity	1.31E-02
90	GO:0004089: carbonate dehydratase activity	1.32E-02
91	GO:0043621: protein self-association	1.41E-02
92	GO:0015293: symporter activity	1.47E-02
93	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.53E-02
94	GO:0051536: iron-sulfur cluster binding	1.82E-02
95	GO:0004857: enzyme inhibitor activity	1.82E-02
96	GO:0008810: cellulase activity	2.37E-02
97	GO:0003727: single-stranded RNA binding	2.51E-02
98	GO:0008514: organic anion transmembrane transporter activity	2.51E-02
99	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.96E-02
100	GO:0008080: N-acetyltransferase activity	2.96E-02
101	GO:0010181: FMN binding	3.12E-02
102	GO:0050662: coenzyme binding	3.12E-02
103	GO:0004872: receptor activity	3.28E-02
104	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.44E-02
105	GO:0008565: protein transporter activity	3.77E-02
106	GO:0005507: copper ion binding	3.80E-02
107	GO:0046910: pectinesterase inhibitor activity	4.05E-02
108	GO:0008483: transaminase activity	4.12E-02