Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G09390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031129: inductive cell-cell signaling0.00E+00
2GO:0071311: cellular response to acetate0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:0071260: cellular response to mechanical stimulus0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0061157: mRNA destabilization0.00E+00
7GO:0090706: specification of plant organ position0.00E+00
8GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
9GO:0007037: vacuolar phosphate transport0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0031116: positive regulation of microtubule polymerization0.00E+00
12GO:0010068: protoderm histogenesis0.00E+00
13GO:0006468: protein phosphorylation1.23E-04
14GO:0010158: abaxial cell fate specification1.50E-04
15GO:0009733: response to auxin1.80E-04
16GO:0006264: mitochondrial DNA replication4.02E-04
17GO:0033259: plastid DNA replication4.02E-04
18GO:0005991: trehalose metabolic process4.02E-04
19GO:0010450: inflorescence meristem growth4.02E-04
20GO:0051171: regulation of nitrogen compound metabolic process4.02E-04
21GO:0010482: regulation of epidermal cell division4.02E-04
22GO:1902265: abscisic acid homeostasis4.02E-04
23GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.83E-04
24GO:0007166: cell surface receptor signaling pathway7.62E-04
25GO:0009638: phototropism8.05E-04
26GO:0080175: phragmoplast microtubule organization8.71E-04
27GO:0007154: cell communication8.71E-04
28GO:0006423: cysteinyl-tRNA aminoacylation8.71E-04
29GO:1900033: negative regulation of trichome patterning8.71E-04
30GO:0042814: monopolar cell growth8.71E-04
31GO:0009786: regulation of asymmetric cell division8.71E-04
32GO:0015804: neutral amino acid transport8.71E-04
33GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole8.71E-04
34GO:1900871: chloroplast mRNA modification8.71E-04
35GO:2000039: regulation of trichome morphogenesis8.71E-04
36GO:0006816: calcium ion transport1.08E-03
37GO:0009150: purine ribonucleotide metabolic process1.41E-03
38GO:0051604: protein maturation1.41E-03
39GO:0001578: microtubule bundle formation1.41E-03
40GO:0016050: vesicle organization1.41E-03
41GO:0045165: cell fate commitment1.41E-03
42GO:0031022: nuclear migration along microfilament1.41E-03
43GO:0051127: positive regulation of actin nucleation1.41E-03
44GO:0071230: cellular response to amino acid stimulus1.41E-03
45GO:0031145: anaphase-promoting complex-dependent catabolic process1.41E-03
46GO:0043693: monoterpene biosynthetic process1.41E-03
47GO:0045604: regulation of epidermal cell differentiation1.41E-03
48GO:0006168: adenine salvage2.04E-03
49GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.04E-03
50GO:0009067: aspartate family amino acid biosynthetic process2.04E-03
51GO:0006166: purine ribonucleoside salvage2.04E-03
52GO:0051513: regulation of monopolar cell growth2.04E-03
53GO:0007231: osmosensory signaling pathway2.04E-03
54GO:0030071: regulation of mitotic metaphase/anaphase transition2.04E-03
55GO:0051639: actin filament network formation2.04E-03
56GO:0044211: CTP salvage2.04E-03
57GO:0009226: nucleotide-sugar biosynthetic process2.04E-03
58GO:0048645: animal organ formation2.04E-03
59GO:0010255: glucose mediated signaling pathway2.04E-03
60GO:0048530: fruit morphogenesis2.04E-03
61GO:0006164: purine nucleotide biosynthetic process2.04E-03
62GO:2000904: regulation of starch metabolic process2.04E-03
63GO:0010187: negative regulation of seed germination2.18E-03
64GO:0005992: trehalose biosynthetic process2.18E-03
65GO:0044206: UMP salvage2.74E-03
66GO:0009902: chloroplast relocation2.74E-03
67GO:0009165: nucleotide biosynthetic process2.74E-03
68GO:0048629: trichome patterning2.74E-03
69GO:0051764: actin crosslink formation2.74E-03
70GO:0051322: anaphase2.74E-03
71GO:0022622: root system development2.74E-03
72GO:0033500: carbohydrate homeostasis2.74E-03
73GO:0007020: microtubule nucleation2.74E-03
74GO:0006544: glycine metabolic process3.51E-03
75GO:0045038: protein import into chloroplast thylakoid membrane3.51E-03
76GO:1902183: regulation of shoot apical meristem development3.51E-03
77GO:0044209: AMP salvage3.51E-03
78GO:0051225: spindle assembly3.51E-03
79GO:0032876: negative regulation of DNA endoreduplication3.51E-03
80GO:0046785: microtubule polymerization3.51E-03
81GO:0010087: phloem or xylem histogenesis4.03E-03
82GO:0010182: sugar mediated signaling pathway4.34E-03
83GO:0009958: positive gravitropism4.34E-03
84GO:0000741: karyogamy4.35E-03
85GO:0006563: L-serine metabolic process4.35E-03
86GO:0009959: negative gravitropism4.35E-03
87GO:0006139: nucleobase-containing compound metabolic process4.35E-03
88GO:0006206: pyrimidine nucleobase metabolic process4.35E-03
89GO:2000033: regulation of seed dormancy process5.24E-03
90GO:0009903: chloroplast avoidance movement5.24E-03
91GO:0009088: threonine biosynthetic process5.24E-03
92GO:0048444: floral organ morphogenesis5.24E-03
93GO:0080086: stamen filament development5.24E-03
94GO:0042372: phylloquinone biosynthetic process5.24E-03
95GO:0048367: shoot system development5.29E-03
96GO:0009658: chloroplast organization5.52E-03
97GO:0009740: gibberellic acid mediated signaling pathway5.96E-03
98GO:0032880: regulation of protein localization6.19E-03
99GO:0010161: red light signaling pathway6.19E-03
100GO:0009610: response to symbiotic fungus6.19E-03
101GO:0048528: post-embryonic root development6.19E-03
102GO:0010050: vegetative phase change6.19E-03
103GO:0009723: response to ethylene6.89E-03
104GO:0046620: regulation of organ growth7.20E-03
105GO:0010078: maintenance of root meristem identity7.20E-03
106GO:0009704: de-etiolation7.20E-03
107GO:0070413: trehalose metabolism in response to stress7.20E-03
108GO:0032875: regulation of DNA endoreduplication7.20E-03
109GO:0033386: geranylgeranyl diphosphate biosynthetic process7.20E-03
110GO:0009787: regulation of abscisic acid-activated signaling pathway7.20E-03
111GO:0009850: auxin metabolic process7.20E-03
112GO:0010029: regulation of seed germination8.22E-03
113GO:0010100: negative regulation of photomorphogenesis8.26E-03
114GO:0006997: nucleus organization8.26E-03
115GO:0043562: cellular response to nitrogen levels8.26E-03
116GO:0010093: specification of floral organ identity8.26E-03
117GO:0010099: regulation of photomorphogenesis8.26E-03
118GO:0006002: fructose 6-phosphate metabolic process8.26E-03
119GO:0009827: plant-type cell wall modification8.26E-03
120GO:0006783: heme biosynthetic process9.38E-03
121GO:0000373: Group II intron splicing9.38E-03
122GO:0006189: 'de novo' IMP biosynthetic process9.38E-03
123GO:0000902: cell morphogenesis9.38E-03
124GO:0009051: pentose-phosphate shunt, oxidative branch9.38E-03
125GO:0045337: farnesyl diphosphate biosynthetic process9.38E-03
126GO:2000024: regulation of leaf development9.38E-03
127GO:0033384: geranyl diphosphate biosynthetic process9.38E-03
128GO:0071577: zinc II ion transmembrane transport1.06E-02
129GO:0010018: far-red light signaling pathway1.06E-02
130GO:1900865: chloroplast RNA modification1.06E-02
131GO:0010380: regulation of chlorophyll biosynthetic process1.06E-02
132GO:0009832: plant-type cell wall biogenesis1.07E-02
133GO:0016310: phosphorylation1.15E-02
134GO:0048829: root cap development1.18E-02
135GO:0010162: seed dormancy process1.18E-02
136GO:0048527: lateral root development1.18E-02
137GO:0009299: mRNA transcription1.18E-02
138GO:0006535: cysteine biosynthetic process from serine1.18E-02
139GO:0040008: regulation of growth1.22E-02
140GO:0007623: circadian rhythm1.29E-02
141GO:0006415: translational termination1.30E-02
142GO:0009684: indoleacetic acid biosynthetic process1.30E-02
143GO:0009773: photosynthetic electron transport in photosystem I1.30E-02
144GO:0009089: lysine biosynthetic process via diaminopimelate1.30E-02
145GO:0010582: floral meristem determinacy1.44E-02
146GO:0006790: sulfur compound metabolic process1.44E-02
147GO:0030154: cell differentiation1.44E-02
148GO:0006839: mitochondrial transport1.47E-02
149GO:0006006: glucose metabolic process1.57E-02
150GO:0030036: actin cytoskeleton organization1.57E-02
151GO:0009725: response to hormone1.57E-02
152GO:0009767: photosynthetic electron transport chain1.57E-02
153GO:0010588: cotyledon vascular tissue pattern formation1.57E-02
154GO:2000012: regulation of auxin polar transport1.57E-02
155GO:0030048: actin filament-based movement1.57E-02
156GO:0009785: blue light signaling pathway1.57E-02
157GO:0010628: positive regulation of gene expression1.57E-02
158GO:0008283: cell proliferation1.67E-02
159GO:0048467: gynoecium development1.71E-02
160GO:0010020: chloroplast fission1.71E-02
161GO:0009933: meristem structural organization1.71E-02
162GO:0090351: seedling development1.86E-02
163GO:0010030: positive regulation of seed germination1.86E-02
164GO:0070588: calcium ion transmembrane transport1.86E-02
165GO:0006855: drug transmembrane transport1.95E-02
166GO:0009833: plant-type primary cell wall biogenesis2.01E-02
167GO:0042753: positive regulation of circadian rhythm2.01E-02
168GO:0051017: actin filament bundle assembly2.16E-02
169GO:0019344: cysteine biosynthetic process2.16E-02
170GO:0009944: polarity specification of adaxial/abaxial axis2.16E-02
171GO:0007010: cytoskeleton organization2.16E-02
172GO:0009585: red, far-red light phototransduction2.25E-02
173GO:0006825: copper ion transport2.32E-02
174GO:0008299: isoprenoid biosynthetic process2.32E-02
175GO:0006418: tRNA aminoacylation for protein translation2.32E-02
176GO:0006874: cellular calcium ion homeostasis2.32E-02
177GO:0043622: cortical microtubule organization2.32E-02
178GO:0003333: amino acid transmembrane transport2.48E-02
179GO:0035428: hexose transmembrane transport2.64E-02
180GO:0006730: one-carbon metabolic process2.64E-02
181GO:0010082: regulation of root meristem growth2.81E-02
182GO:0009686: gibberellin biosynthetic process2.81E-02
183GO:0010214: seed coat development2.99E-02
184GO:0010091: trichome branching2.99E-02
185GO:0019722: calcium-mediated signaling2.99E-02
186GO:0016117: carotenoid biosynthetic process3.16E-02
187GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.16E-02
188GO:0070417: cellular response to cold3.16E-02
189GO:0008284: positive regulation of cell proliferation3.16E-02
190GO:0046777: protein autophosphorylation3.20E-02
191GO:0009416: response to light stimulus3.24E-02
192GO:0000271: polysaccharide biosynthetic process3.34E-02
193GO:0080022: primary root development3.34E-02
194GO:0034220: ion transmembrane transport3.34E-02
195GO:0042631: cellular response to water deprivation3.34E-02
196GO:0000226: microtubule cytoskeleton organization3.34E-02
197GO:0042335: cuticle development3.34E-02
198GO:0009742: brassinosteroid mediated signaling pathway3.40E-02
199GO:0010197: polar nucleus fusion3.53E-02
200GO:0046323: glucose import3.53E-02
201GO:0008360: regulation of cell shape3.53E-02
202GO:0045489: pectin biosynthetic process3.53E-02
203GO:0010154: fruit development3.53E-02
204GO:0007018: microtubule-based movement3.71E-02
205GO:0009851: auxin biosynthetic process3.90E-02
206GO:0048825: cotyledon development3.90E-02
207GO:0032502: developmental process4.29E-02
208GO:0010583: response to cyclopentenone4.29E-02
209GO:0006508: proteolysis4.38E-02
210GO:0071281: cellular response to iron ion4.49E-02
211GO:0009751: response to salicylic acid4.68E-02
212GO:0009639: response to red or far red light4.69E-02
213GO:0006464: cellular protein modification process4.69E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0015276: ligand-gated ion channel activity0.00E+00
3GO:0019136: deoxynucleoside kinase activity0.00E+00
4GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
5GO:0004674: protein serine/threonine kinase activity3.96E-05
6GO:0016301: kinase activity5.43E-05
7GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.83E-05
8GO:0010313: phytochrome binding4.02E-04
9GO:0050139: nicotinate-N-glucosyltransferase activity4.02E-04
10GO:0008066: glutamate receptor activity4.02E-04
11GO:0004008: copper-exporting ATPase activity4.02E-04
12GO:0005524: ATP binding5.01E-04
13GO:0015172: acidic amino acid transmembrane transporter activity8.71E-04
14GO:0050017: L-3-cyanoalanine synthase activity8.71E-04
15GO:0017118: lipoyltransferase activity8.71E-04
16GO:0043425: bHLH transcription factor binding8.71E-04
17GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity8.71E-04
18GO:0004817: cysteine-tRNA ligase activity8.71E-04
19GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.71E-04
20GO:0080097: L-tryptophan:pyruvate aminotransferase activity8.71E-04
21GO:0004672: protein kinase activity1.21E-03
22GO:0005262: calcium channel activity1.40E-03
23GO:0017172: cysteine dioxygenase activity2.04E-03
24GO:0047627: adenylylsulfatase activity2.04E-03
25GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.04E-03
26GO:0004072: aspartate kinase activity2.04E-03
27GO:0015175: neutral amino acid transmembrane transporter activity2.04E-03
28GO:0003999: adenine phosphoribosyltransferase activity2.04E-03
29GO:0004176: ATP-dependent peptidase activity2.65E-03
30GO:0004845: uracil phosphoribosyltransferase activity2.74E-03
31GO:0004345: glucose-6-phosphate dehydrogenase activity2.74E-03
32GO:0008409: 5'-3' exonuclease activity2.74E-03
33GO:0080032: methyl jasmonate esterase activity2.74E-03
34GO:0019199: transmembrane receptor protein kinase activity2.74E-03
35GO:0008017: microtubule binding3.04E-03
36GO:0043621: protein self-association3.10E-03
37GO:0016846: carbon-sulfur lyase activity3.51E-03
38GO:0004372: glycine hydroxymethyltransferase activity3.51E-03
39GO:0016773: phosphotransferase activity, alcohol group as acceptor3.51E-03
40GO:0042578: phosphoric ester hydrolase activity4.35E-03
41GO:0016208: AMP binding4.35E-03
42GO:0003730: mRNA 3'-UTR binding5.24E-03
43GO:0004124: cysteine synthase activity5.24E-03
44GO:0004849: uridine kinase activity5.24E-03
45GO:0003872: 6-phosphofructokinase activity6.19E-03
46GO:0019899: enzyme binding6.19E-03
47GO:0004311: farnesyltranstransferase activity7.20E-03
48GO:0005375: copper ion transmembrane transporter activity8.26E-03
49GO:0003747: translation release factor activity9.38E-03
50GO:0004337: geranyltranstransferase activity9.38E-03
51GO:0004252: serine-type endopeptidase activity9.80E-03
52GO:0015238: drug transmembrane transporter activity1.07E-02
53GO:0004805: trehalose-phosphatase activity1.18E-02
54GO:0004713: protein tyrosine kinase activity1.18E-02
55GO:0044212: transcription regulatory region DNA binding1.22E-02
56GO:0008794: arsenate reductase (glutaredoxin) activity1.30E-02
57GO:0008327: methyl-CpG binding1.30E-02
58GO:0047372: acylglycerol lipase activity1.30E-02
59GO:0004161: dimethylallyltranstransferase activity1.30E-02
60GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.57E-02
61GO:0004089: carbonate dehydratase activity1.57E-02
62GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.71E-02
63GO:0008083: growth factor activity1.71E-02
64GO:0042802: identical protein binding1.76E-02
65GO:0051537: 2 iron, 2 sulfur cluster binding1.81E-02
66GO:0004970: ionotropic glutamate receptor activity1.86E-02
67GO:0005217: intracellular ligand-gated ion channel activity1.86E-02
68GO:0003887: DNA-directed DNA polymerase activity2.01E-02
69GO:0005385: zinc ion transmembrane transporter activity2.16E-02
70GO:0004857: enzyme inhibitor activity2.16E-02
71GO:0005528: FK506 binding2.16E-02
72GO:0008324: cation transmembrane transporter activity2.32E-02
73GO:0003777: microtubule motor activity2.50E-02
74GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.64E-02
75GO:0016760: cellulose synthase (UDP-forming) activity2.81E-02
76GO:0030570: pectate lyase activity2.81E-02
77GO:0003727: single-stranded RNA binding2.99E-02
78GO:0008514: organic anion transmembrane transporter activity2.99E-02
79GO:0016874: ligase activity3.02E-02
80GO:0004812: aminoacyl-tRNA ligase activity3.16E-02
81GO:0001085: RNA polymerase II transcription factor binding3.53E-02
82GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.68E-02
83GO:0005355: glucose transmembrane transporter activity3.71E-02
84GO:0010181: FMN binding3.71E-02
85GO:0004871: signal transducer activity3.90E-02
86GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.20E-02
87GO:0016829: lyase activity4.33E-02
88GO:0000156: phosphorelay response regulator activity4.49E-02
89GO:0051015: actin filament binding4.49E-02
90GO:0016791: phosphatase activity4.69E-02
91GO:0016759: cellulose synthase activity4.69E-02
92GO:0008237: metallopeptidase activity4.90E-02
93GO:0008483: transaminase activity4.90E-02
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Gene type



Gene DE type