co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G09340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
3	GO:0015717: triose phosphate transport	0.00E+00
4	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
5	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
6	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0015979: photosynthesis	5.06E-11
9	GO:0055114: oxidation-reduction process	7.62E-09
10	GO:0015995: chlorophyll biosynthetic process	1.12E-07
11	GO:0006094: gluconeogenesis	1.08E-06
12	GO:0010207: photosystem II assembly	1.43E-06
13	GO:0019253: reductive pentose-phosphate cycle	1.43E-06
14	GO:0006636: unsaturated fatty acid biosynthetic process	2.43E-06
15	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.53E-06
16	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.53E-06
17	GO:0006000: fructose metabolic process	1.27E-05
18	GO:0009773: photosynthetic electron transport in photosystem I	2.95E-05
19	GO:0009735: response to cytokinin	3.54E-05
20	GO:0010600: regulation of auxin biosynthetic process	5.13E-05
21	GO:0034599: cellular response to oxidative stress	1.29E-04
22	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.62E-04
23	GO:0010196: nonphotochemical quenching	2.13E-04
24	GO:0009772: photosynthetic electron transport in photosystem II	2.13E-04
25	GO:0006662: glycerol ether metabolic process	2.51E-04
26	GO:0009704: de-etiolation	2.69E-04
27	GO:0010928: regulation of auxin mediated signaling pathway	2.69E-04
28	GO:0006810: transport	2.73E-04
29	GO:0030974: thiamine pyrophosphate transport	2.77E-04
30	GO:0046467: membrane lipid biosynthetic process	2.77E-04
31	GO:0043953: protein transport by the Tat complex	2.77E-04
32	GO:0051775: response to redox state	2.77E-04
33	GO:0071277: cellular response to calcium ion	2.77E-04
34	GO:0065002: intracellular protein transmembrane transport	2.77E-04
35	GO:0043007: maintenance of rDNA	2.77E-04
36	GO:0034337: RNA folding	2.77E-04
37	GO:0019510: S-adenosylhomocysteine catabolic process	2.77E-04
38	GO:0051180: vitamin transport	2.77E-04
39	GO:0032259: methylation	2.91E-04
40	GO:0019252: starch biosynthetic process	3.05E-04
41	GO:0006002: fructose 6-phosphate metabolic process	3.32E-04
42	GO:0006754: ATP biosynthetic process	3.99E-04
43	GO:0009658: chloroplast organization	4.89E-04
44	GO:0033353: S-adenosylmethionine cycle	6.09E-04
45	GO:0015893: drug transport	6.09E-04
46	GO:0008616: queuosine biosynthetic process	6.09E-04
47	GO:0018298: protein-chromophore linkage	7.57E-04
48	GO:0005986: sucrose biosynthetic process	8.26E-04
49	GO:0090391: granum assembly	9.88E-04
50	GO:0006518: peptide metabolic process	9.88E-04
51	GO:0035436: triose phosphate transmembrane transport	9.88E-04
52	GO:0044375: regulation of peroxisome size	9.88E-04
53	GO:0000027: ribosomal large subunit assembly	1.27E-03
54	GO:0010731: protein glutathionylation	1.41E-03
55	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.41E-03
56	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.41E-03
57	GO:0006020: inositol metabolic process	1.41E-03
58	GO:0071484: cellular response to light intensity	1.41E-03
59	GO:0009152: purine ribonucleotide biosynthetic process	1.41E-03
60	GO:0046653: tetrahydrofolate metabolic process	1.41E-03
61	GO:0006107: oxaloacetate metabolic process	1.41E-03
62	GO:0006546: glycine catabolic process	1.89E-03
63	GO:0006021: inositol biosynthetic process	1.89E-03
64	GO:0015713: phosphoglycerate transport	1.89E-03
65	GO:0006734: NADH metabolic process	1.89E-03
66	GO:0010021: amylopectin biosynthetic process	1.89E-03
67	GO:0009765: photosynthesis, light harvesting	1.89E-03
68	GO:0006109: regulation of carbohydrate metabolic process	1.89E-03
69	GO:0015994: chlorophyll metabolic process	1.89E-03
70	GO:0006656: phosphatidylcholine biosynthetic process	2.41E-03
71	GO:0043097: pyrimidine nucleoside salvage	2.41E-03
72	GO:0009107: lipoate biosynthetic process	2.41E-03
73	GO:0006096: glycolytic process	2.52E-03
74	GO:0010190: cytochrome b6f complex assembly	2.98E-03
75	GO:0006206: pyrimidine nucleobase metabolic process	2.98E-03
76	GO:0046855: inositol phosphate dephosphorylation	2.98E-03
77	GO:0009643: photosynthetic acclimation	2.98E-03
78	GO:0042549: photosystem II stabilization	2.98E-03
79	GO:0045926: negative regulation of growth	3.58E-03
80	GO:0017148: negative regulation of translation	3.58E-03
81	GO:1901259: chloroplast rRNA processing	3.58E-03
82	GO:0000054: ribosomal subunit export from nucleus	3.58E-03
83	GO:0010189: vitamin E biosynthetic process	3.58E-03
84	GO:0009854: oxidative photosynthetic carbon pathway	3.58E-03
85	GO:1900057: positive regulation of leaf senescence	4.23E-03
86	GO:0010161: red light signaling pathway	4.23E-03
87	GO:0045454: cell redox homeostasis	4.33E-03
88	GO:0010027: thylakoid membrane organization	4.47E-03
89	GO:0005978: glycogen biosynthetic process	4.90E-03
90	GO:0009642: response to light intensity	4.90E-03
91	GO:0016559: peroxisome fission	4.90E-03
92	GO:0048564: photosystem I assembly	4.90E-03
93	GO:0008610: lipid biosynthetic process	4.90E-03
94	GO:0009657: plastid organization	5.62E-03
95	GO:0006526: arginine biosynthetic process	5.62E-03
96	GO:0032544: plastid translation	5.62E-03
97	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.62E-03
98	GO:0009932: cell tip growth	5.62E-03
99	GO:0071482: cellular response to light stimulus	5.62E-03
100	GO:0006098: pentose-phosphate shunt	6.37E-03
101	GO:0010206: photosystem II repair	6.37E-03
102	GO:0090333: regulation of stomatal closure	6.37E-03
103	GO:0006783: heme biosynthetic process	6.37E-03
104	GO:0010205: photoinhibition	7.15E-03
105	GO:0006779: porphyrin-containing compound biosynthetic process	7.15E-03
106	GO:0010267: production of ta-siRNAs involved in RNA interference	7.15E-03
107	GO:0042761: very long-chain fatty acid biosynthetic process	7.15E-03
108	GO:0009853: photorespiration	7.40E-03
109	GO:0006782: protoporphyrinogen IX biosynthetic process	7.97E-03
110	GO:0006535: cysteine biosynthetic process from serine	7.97E-03
111	GO:0019684: photosynthesis, light reaction	8.82E-03
112	GO:0043085: positive regulation of catalytic activity	8.82E-03
113	GO:0006415: translational termination	8.82E-03
114	GO:0018119: peptidyl-cysteine S-nitrosylation	8.82E-03
115	GO:0009698: phenylpropanoid metabolic process	8.82E-03
116	GO:0010114: response to red light	9.55E-03
117	GO:0002213: defense response to insect	9.70E-03
118	GO:0016925: protein sumoylation	9.70E-03
119	GO:0006790: sulfur compound metabolic process	9.70E-03
120	GO:0006108: malate metabolic process	1.06E-02
121	GO:0006006: glucose metabolic process	1.06E-02
122	GO:0018107: peptidyl-threonine phosphorylation	1.06E-02
123	GO:0009767: photosynthetic electron transport chain	1.06E-02
124	GO:0042254: ribosome biogenesis	1.14E-02
125	GO:0005985: sucrose metabolic process	1.25E-02
126	GO:0046854: phosphatidylinositol phosphorylation	1.25E-02
127	GO:0007031: peroxisome organization	1.25E-02
128	GO:0009585: red, far-red light phototransduction	1.29E-02
129	GO:0042742: defense response to bacterium	1.33E-02
130	GO:0019762: glucosinolate catabolic process	1.35E-02
131	GO:0006406: mRNA export from nucleus	1.46E-02
132	GO:0019344: cysteine biosynthetic process	1.46E-02
133	GO:0043086: negative regulation of catalytic activity	1.53E-02
134	GO:0009695: jasmonic acid biosynthetic process	1.56E-02
135	GO:0009768: photosynthesis, light harvesting in photosystem I	1.56E-02
136	GO:0031408: oxylipin biosynthetic process	1.67E-02
137	GO:0061077: chaperone-mediated protein folding	1.67E-02
138	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.78E-02
139	GO:0030433: ubiquitin-dependent ERAD pathway	1.78E-02
140	GO:0006730: one-carbon metabolic process	1.78E-02
141	GO:0019748: secondary metabolic process	1.78E-02
142	GO:0010017: red or far-red light signaling pathway	1.78E-02
143	GO:0006412: translation	1.79E-02
144	GO:0009693: ethylene biosynthetic process	1.89E-02
145	GO:0019722: calcium-mediated signaling	2.01E-02
146	GO:0009306: protein secretion	2.01E-02
147	GO:0009409: response to cold	2.22E-02
148	GO:0006606: protein import into nucleus	2.25E-02
149	GO:0042631: cellular response to water deprivation	2.25E-02
150	GO:0006520: cellular amino acid metabolic process	2.37E-02
151	GO:0009741: response to brassinosteroid	2.37E-02
152	GO:0009058: biosynthetic process	2.43E-02
153	GO:0015986: ATP synthesis coupled proton transport	2.50E-02
154	GO:0005975: carbohydrate metabolic process	2.69E-02
155	GO:0046686: response to cadmium ion	2.81E-02
156	GO:0010583: response to cyclopentenone	2.89E-02
157	GO:0031047: gene silencing by RNA	2.89E-02
158	GO:0009567: double fertilization forming a zygote and endosperm	3.16E-02
159	GO:0007267: cell-cell signaling	3.30E-02
160	GO:0051607: defense response to virus	3.44E-02
161	GO:0042128: nitrate assimilation	3.87E-02
162	GO:0010411: xyloglucan metabolic process	4.02E-02
163	GO:0006950: response to stress	4.02E-02
164	GO:0010218: response to far red light	4.64E-02
165	GO:0006499: N-terminal protein myristoylation	4.64E-02
166	GO:0009416: response to light stimulus	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
5	GO:0008974: phosphoribulokinase activity	0.00E+00
6	GO:0008465: glycerate dehydrogenase activity	0.00E+00
7	GO:0046408: chlorophyll synthetase activity	0.00E+00
8	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
9	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
10	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
11	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
12	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
13	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
14	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
15	GO:0030794: (S)-coclaurine-N-methyltransferase activity	0.00E+00
16	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
17	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
18	GO:0090711: FMN hydrolase activity	0.00E+00
19	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.53E-06
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.53E-06
21	GO:0018708: thiol S-methyltransferase activity	3.53E-06
22	GO:0016491: oxidoreductase activity	8.02E-06
23	GO:0019843: rRNA binding	1.05E-05
24	GO:0043495: protein anchor	5.13E-05
25	GO:0004332: fructose-bisphosphate aldolase activity	1.18E-04
26	GO:0047134: protein-disulfide reductase activity	2.04E-04
27	GO:0019899: enzyme binding	2.13E-04
28	GO:0051287: NAD binding	2.56E-04
29	GO:0010313: phytochrome binding	2.77E-04
30	GO:0008746: NAD(P)+ transhydrogenase activity	2.77E-04
31	GO:0035671: enone reductase activity	2.77E-04
32	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.77E-04
33	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.77E-04
34	GO:0090422: thiamine pyrophosphate transporter activity	2.77E-04
35	GO:0004013: adenosylhomocysteinase activity	2.77E-04
36	GO:0004791: thioredoxin-disulfide reductase activity	2.78E-04
37	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.32E-04
38	GO:0048038: quinone binding	3.34E-04
39	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.97E-04
40	GO:0008168: methyltransferase activity	4.56E-04
41	GO:0030234: enzyme regulator activity	5.52E-04
42	GO:0016168: chlorophyll binding	5.80E-04
43	GO:0043024: ribosomal small subunit binding	6.09E-04
44	GO:0008934: inositol monophosphate 1-phosphatase activity	6.09E-04
45	GO:0052833: inositol monophosphate 4-phosphatase activity	6.09E-04
46	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.09E-04
47	GO:0000234: phosphoethanolamine N-methyltransferase activity	6.09E-04
48	GO:0050017: L-3-cyanoalanine synthase activity	6.09E-04
49	GO:0008883: glutamyl-tRNA reductase activity	6.09E-04
50	GO:0047746: chlorophyllase activity	6.09E-04
51	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.09E-04
52	GO:0004047: aminomethyltransferase activity	6.09E-04
53	GO:0052832: inositol monophosphate 3-phosphatase activity	6.09E-04
54	GO:0033201: alpha-1,4-glucan synthase activity	6.09E-04
55	GO:0008479: queuine tRNA-ribosyltransferase activity	6.09E-04
56	GO:0004565: beta-galactosidase activity	8.26E-04
57	GO:0031072: heat shock protein binding	8.26E-04
58	GO:0016992: lipoate synthase activity	9.88E-04
59	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.88E-04
60	GO:0071917: triose-phosphate transmembrane transporter activity	9.88E-04
61	GO:0008864: formyltetrahydrofolate deformylase activity	9.88E-04
62	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.88E-04
63	GO:0019948: SUMO activating enzyme activity	9.88E-04
64	GO:0010277: chlorophyllide a oxygenase [overall] activity	9.88E-04
65	GO:0004373: glycogen (starch) synthase activity	9.88E-04
66	GO:0005528: FK506 binding	1.27E-03
67	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.41E-03
68	GO:0016851: magnesium chelatase activity	1.41E-03
69	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.41E-03
70	GO:0048027: mRNA 5'-UTR binding	1.41E-03
71	GO:0042802: identical protein binding	1.76E-03
72	GO:0022891: substrate-specific transmembrane transporter activity	1.83E-03
73	GO:0003735: structural constituent of ribosome	1.88E-03
74	GO:0009011: starch synthase activity	1.89E-03
75	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.89E-03
76	GO:0015120: phosphoglycerate transmembrane transporter activity	1.89E-03
77	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.89E-03
78	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.41E-03
79	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.41E-03
80	GO:0042578: phosphoric ester hydrolase activity	2.98E-03
81	GO:0016615: malate dehydrogenase activity	2.98E-03
82	GO:0015035: protein disulfide oxidoreductase activity	3.31E-03
83	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.58E-03
84	GO:0004849: uridine kinase activity	3.58E-03
85	GO:0030060: L-malate dehydrogenase activity	3.58E-03
86	GO:0004124: cysteine synthase activity	3.58E-03
87	GO:0004033: aldo-keto reductase (NADP) activity	4.90E-03
88	GO:0071949: FAD binding	6.37E-03
89	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	6.37E-03
90	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	7.15E-03
91	GO:0008047: enzyme activator activity	7.97E-03
92	GO:0050661: NADP binding	8.43E-03
93	GO:0004185: serine-type carboxypeptidase activity	9.55E-03
94	GO:0051537: 2 iron, 2 sulfur cluster binding	1.03E-02
95	GO:0043621: protein self-association	1.03E-02
96	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.12E-02
97	GO:0008266: poly(U) RNA binding	1.16E-02
98	GO:0031409: pigment binding	1.35E-02
99	GO:0004857: enzyme inhibitor activity	1.46E-02
100	GO:0051082: unfolded protein binding	1.84E-02
101	GO:0003727: single-stranded RNA binding	2.01E-02
102	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.37E-02
103	GO:0005507: copper ion binding	2.41E-02
104	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.76E-02
105	GO:0008565: protein transporter activity	2.76E-02
106	GO:0004518: nuclease activity	2.89E-02
107	GO:0008483: transaminase activity	3.30E-02
108	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.30E-02
109	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.02E-02
110	GO:0016887: ATPase activity	4.13E-02
111	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.17E-02
112	GO:0004222: metalloendopeptidase activity	4.64E-02
113	GO:0016787: hydrolase activity	4.74E-02