Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G08390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0033231: carbohydrate export0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0006573: valine metabolic process0.00E+00
6GO:1905157: positive regulation of photosynthesis0.00E+00
7GO:0015995: chlorophyll biosynthetic process6.49E-05
8GO:0009904: chloroplast accumulation movement8.25E-05
9GO:0009903: chloroplast avoidance movement1.64E-04
10GO:0044550: secondary metabolite biosynthetic process1.67E-04
11GO:0055114: oxidation-reduction process1.72E-04
12GO:0007623: circadian rhythm2.20E-04
13GO:0009704: de-etiolation2.73E-04
14GO:1902334: fructose export from vacuole to cytoplasm2.80E-04
15GO:0010362: negative regulation of anion channel activity by blue light2.80E-04
16GO:0015969: guanosine tetraphosphate metabolic process2.80E-04
17GO:0015755: fructose transport2.80E-04
18GO:0051180: vitamin transport2.80E-04
19GO:0030974: thiamine pyrophosphate transport2.80E-04
20GO:0046467: membrane lipid biosynthetic process2.80E-04
21GO:0010426: DNA methylation on cytosine within a CHH sequence2.80E-04
22GO:0071277: cellular response to calcium ion2.80E-04
23GO:0006551: leucine metabolic process2.80E-04
24GO:0042371: vitamin K biosynthetic process2.80E-04
25GO:0071461: cellular response to redox state2.80E-04
26GO:0046167: glycerol-3-phosphate biosynthetic process2.80E-04
27GO:0006098: pentose-phosphate shunt4.05E-04
28GO:0009658: chloroplast organization5.00E-04
29GO:0080005: photosystem stoichiometry adjustment6.14E-04
30GO:0006898: receptor-mediated endocytosis6.14E-04
31GO:0015893: drug transport6.14E-04
32GO:0006650: glycerophospholipid metabolic process6.14E-04
33GO:0010541: acropetal auxin transport6.14E-04
34GO:0010155: regulation of proton transport6.14E-04
35GO:0015790: UDP-xylose transport6.14E-04
36GO:0006094: gluconeogenesis8.37E-04
37GO:0010143: cutin biosynthetic process9.39E-04
38GO:0046168: glycerol-3-phosphate catabolic process9.96E-04
39GO:0010160: formation of animal organ boundary9.96E-04
40GO:0044375: regulation of peroxisome size9.96E-04
41GO:0032259: methylation1.34E-03
42GO:0009152: purine ribonucleotide biosynthetic process1.42E-03
43GO:0046653: tetrahydrofolate metabolic process1.42E-03
44GO:0043481: anthocyanin accumulation in tissues in response to UV light1.42E-03
45GO:0006072: glycerol-3-phosphate metabolic process1.42E-03
46GO:2001141: regulation of RNA biosynthetic process1.42E-03
47GO:0015689: molybdate ion transport1.91E-03
48GO:0045727: positive regulation of translation1.91E-03
49GO:0031122: cytoplasmic microtubule organization1.91E-03
50GO:0010600: regulation of auxin biosynthetic process1.91E-03
51GO:0006021: inositol biosynthetic process1.91E-03
52GO:0071483: cellular response to blue light1.91E-03
53GO:0019722: calcium-mediated signaling2.02E-03
54GO:0016123: xanthophyll biosynthetic process2.43E-03
55GO:0006465: signal peptide processing2.43E-03
56GO:0006520: cellular amino acid metabolic process2.54E-03
57GO:0060918: auxin transport3.00E-03
58GO:1902456: regulation of stomatal opening3.00E-03
59GO:0046855: inositol phosphate dephosphorylation3.00E-03
60GO:0009643: photosynthetic acclimation3.00E-03
61GO:0007264: small GTPase mediated signal transduction3.35E-03
62GO:0032502: developmental process3.35E-03
63GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.62E-03
64GO:0009082: branched-chain amino acid biosynthetic process3.62E-03
65GO:0017148: negative regulation of translation3.62E-03
66GO:0000054: ribosomal subunit export from nucleus3.62E-03
67GO:0009099: valine biosynthetic process3.62E-03
68GO:0009854: oxidative photosynthetic carbon pathway3.62E-03
69GO:0010019: chloroplast-nucleus signaling pathway3.62E-03
70GO:0007267: cell-cell signaling4.03E-03
71GO:0071555: cell wall organization4.23E-03
72GO:1900056: negative regulation of leaf senescence4.26E-03
73GO:1900057: positive regulation of leaf senescence4.26E-03
74GO:0006400: tRNA modification4.26E-03
75GO:0010161: red light signaling pathway4.26E-03
76GO:0007155: cell adhesion4.95E-03
77GO:0010928: regulation of auxin mediated signaling pathway4.95E-03
78GO:0042255: ribosome assembly4.95E-03
79GO:0006353: DNA-templated transcription, termination4.95E-03
80GO:0009690: cytokinin metabolic process4.95E-03
81GO:0000105: histidine biosynthetic process4.95E-03
82GO:0009231: riboflavin biosynthetic process4.95E-03
83GO:0016559: peroxisome fission4.95E-03
84GO:0010411: xyloglucan metabolic process5.33E-03
85GO:0009932: cell tip growth5.67E-03
86GO:0071482: cellular response to light stimulus5.67E-03
87GO:0009657: plastid organization5.67E-03
88GO:0009097: isoleucine biosynthetic process5.67E-03
89GO:0006526: arginine biosynthetic process5.67E-03
90GO:0032544: plastid translation5.67E-03
91GO:0030244: cellulose biosynthetic process5.91E-03
92GO:0009821: alkaloid biosynthetic process6.43E-03
93GO:0090305: nucleic acid phosphodiester bond hydrolysis6.43E-03
94GO:0090333: regulation of stomatal closure6.43E-03
95GO:0010205: photoinhibition7.22E-03
96GO:0009638: phototropism7.22E-03
97GO:0048354: mucilage biosynthetic process involved in seed coat development7.22E-03
98GO:0010380: regulation of chlorophyll biosynthetic process7.22E-03
99GO:0009853: photorespiration7.49E-03
100GO:0009637: response to blue light7.49E-03
101GO:0010192: mucilage biosynthetic process8.04E-03
102GO:0006995: cellular response to nitrogen starvation8.04E-03
103GO:0019538: protein metabolic process8.04E-03
104GO:0006535: cysteine biosynthetic process from serine8.04E-03
105GO:0009688: abscisic acid biosynthetic process8.04E-03
106GO:0043069: negative regulation of programmed cell death8.04E-03
107GO:0009641: shade avoidance8.04E-03
108GO:0043085: positive regulation of catalytic activity8.90E-03
109GO:0006415: translational termination8.90E-03
110GO:0006352: DNA-templated transcription, initiation8.90E-03
111GO:0000272: polysaccharide catabolic process8.90E-03
112GO:0009750: response to fructose8.90E-03
113GO:0018119: peptidyl-cysteine S-nitrosylation8.90E-03
114GO:0006631: fatty acid metabolic process8.91E-03
115GO:0010114: response to red light9.67E-03
116GO:0008361: regulation of cell size9.79E-03
117GO:0006790: sulfur compound metabolic process9.79E-03
118GO:0042546: cell wall biogenesis1.01E-02
119GO:0030048: actin filament-based movement1.07E-02
120GO:0009785: blue light signaling pathway1.07E-02
121GO:0018107: peptidyl-threonine phosphorylation1.07E-02
122GO:0009718: anthocyanin-containing compound biosynthetic process1.07E-02
123GO:0009725: response to hormone1.07E-02
124GO:0034605: cellular response to heat1.17E-02
125GO:0010207: photosystem II assembly1.17E-02
126GO:0007015: actin filament organization1.17E-02
127GO:0010223: secondary shoot formation1.17E-02
128GO:0010540: basipetal auxin transport1.17E-02
129GO:0007031: peroxisome organization1.26E-02
130GO:0042343: indole glucosinolate metabolic process1.26E-02
131GO:0019853: L-ascorbic acid biosynthetic process1.26E-02
132GO:0046854: phosphatidylinositol phosphorylation1.26E-02
133GO:0009585: red, far-red light phototransduction1.31E-02
134GO:0019762: glucosinolate catabolic process1.37E-02
135GO:0010025: wax biosynthetic process1.37E-02
136GO:0006636: unsaturated fatty acid biosynthetic process1.37E-02
137GO:0009833: plant-type primary cell wall biogenesis1.37E-02
138GO:0006857: oligopeptide transport1.40E-02
139GO:0019344: cysteine biosynthetic process1.47E-02
140GO:0006096: glycolytic process1.55E-02
141GO:0006306: DNA methylation1.68E-02
142GO:0031408: oxylipin biosynthetic process1.68E-02
143GO:0051260: protein homooligomerization1.68E-02
144GO:0098542: defense response to other organism1.68E-02
145GO:0045893: positive regulation of transcription, DNA-templated1.78E-02
146GO:0010017: red or far-red light signaling pathway1.80E-02
147GO:0009294: DNA mediated transformation1.91E-02
148GO:0071369: cellular response to ethylene stimulus1.91E-02
149GO:0048443: stamen development2.03E-02
150GO:0006817: phosphate ion transport2.03E-02
151GO:0009306: protein secretion2.03E-02
152GO:0070417: cellular response to cold2.15E-02
153GO:0042631: cellular response to water deprivation2.27E-02
154GO:0009958: positive gravitropism2.39E-02
155GO:0045489: pectin biosynthetic process2.39E-02
156GO:0010182: sugar mediated signaling pathway2.39E-02
157GO:0009058: biosynthetic process2.46E-02
158GO:0007059: chromosome segregation2.52E-02
159GO:0009646: response to absence of light2.52E-02
160GO:0042752: regulation of circadian rhythm2.52E-02
161GO:0006810: transport2.61E-02
162GO:0019252: starch biosynthetic process2.65E-02
163GO:0008654: phospholipid biosynthetic process2.65E-02
164GO:0046686: response to cadmium ion2.88E-02
165GO:0006633: fatty acid biosynthetic process2.94E-02
166GO:0006413: translational initiation3.01E-02
167GO:0009639: response to red or far red light3.19E-02
168GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.76E-02
169GO:0018298: protein-chromophore linkage4.37E-02
170GO:0000160: phosphorelay signal transduction system4.52E-02
171GO:0010311: lateral root formation4.52E-02
172GO:0006499: N-terminal protein myristoylation4.68E-02
173GO:0009407: toxin catabolic process4.68E-02
174GO:0010218: response to far red light4.68E-02
175GO:0009910: negative regulation of flower development4.84E-02
176GO:0048527: lateral root development4.84E-02
177GO:0010119: regulation of stomatal movement4.84E-02
178GO:0007568: aging4.84E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
6GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
7GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
8GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
9GO:0015284: fructose uniporter activity0.00E+00
10GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
11GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
12GO:0018708: thiol S-methyltransferase activity3.59E-06
13GO:0016491: oxidoreductase activity4.70E-05
14GO:0004332: fructose-bisphosphate aldolase activity1.20E-04
15GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity2.80E-04
16GO:0046906: tetrapyrrole binding2.80E-04
17GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.80E-04
18GO:0030794: (S)-coclaurine-N-methyltransferase activity2.80E-04
19GO:0090422: thiamine pyrophosphate transporter activity2.80E-04
20GO:0080132: fatty acid alpha-hydroxylase activity2.80E-04
21GO:0008568: microtubule-severing ATPase activity2.80E-04
22GO:0016618: hydroxypyruvate reductase activity2.80E-04
23GO:0003984: acetolactate synthase activity2.80E-04
24GO:0010313: phytochrome binding2.80E-04
25GO:0031957: very long-chain fatty acid-CoA ligase activity2.80E-04
26GO:0004328: formamidase activity2.80E-04
27GO:0003879: ATP phosphoribosyltransferase activity2.80E-04
28GO:0010347: L-galactose-1-phosphate phosphatase activity2.80E-04
29GO:0035671: enone reductase activity2.80E-04
30GO:0071949: FAD binding4.05E-04
31GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity6.14E-04
32GO:0052832: inositol monophosphate 3-phosphatase activity6.14E-04
33GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity6.14E-04
34GO:0043024: ribosomal small subunit binding6.14E-04
35GO:0008934: inositol monophosphate 1-phosphatase activity6.14E-04
36GO:0052833: inositol monophosphate 4-phosphatase activity6.14E-04
37GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity6.14E-04
38GO:0005464: UDP-xylose transmembrane transporter activity6.14E-04
39GO:0005353: fructose transmembrane transporter activity6.14E-04
40GO:0008728: GTP diphosphokinase activity6.14E-04
41GO:0050017: L-3-cyanoalanine synthase activity6.14E-04
42GO:0010297: heteropolysaccharide binding6.14E-04
43GO:0004565: beta-galactosidase activity8.37E-04
44GO:0010277: chlorophyllide a oxygenase [overall] activity9.96E-04
45GO:0004373: glycogen (starch) synthase activity9.96E-04
46GO:0050734: hydroxycinnamoyltransferase activity9.96E-04
47GO:0003935: GTP cyclohydrolase II activity9.96E-04
48GO:0030267: glyoxylate reductase (NADP) activity9.96E-04
49GO:0016742: hydroxymethyl-, formyl- and related transferase activity9.96E-04
50GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity9.96E-04
51GO:0008864: formyltetrahydrofolate deformylase activity9.96E-04
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor9.96E-04
53GO:0005506: iron ion binding1.23E-03
54GO:0048027: mRNA 5'-UTR binding1.42E-03
55GO:0022890: inorganic cation transmembrane transporter activity1.42E-03
56GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.42E-03
57GO:0009882: blue light photoreceptor activity1.42E-03
58GO:0042802: identical protein binding1.79E-03
59GO:0051287: NAD binding1.80E-03
60GO:0080032: methyl jasmonate esterase activity1.91E-03
61GO:0016987: sigma factor activity1.91E-03
62GO:0009011: starch synthase activity1.91E-03
63GO:0015098: molybdate ion transmembrane transporter activity1.91E-03
64GO:0001053: plastid sigma factor activity1.91E-03
65GO:0003727: single-stranded RNA binding2.02E-03
66GO:0008168: methyltransferase activity2.28E-03
67GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.43E-03
68GO:0008080: N-acetyltransferase activity2.54E-03
69GO:0080030: methyl indole-3-acetate esterase activity3.00E-03
70GO:0035673: oligopeptide transmembrane transporter activity3.00E-03
71GO:0016762: xyloglucan:xyloglucosyl transferase activity3.14E-03
72GO:0004518: nuclease activity3.35E-03
73GO:0004124: cysteine synthase activity3.62E-03
74GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.62E-03
75GO:0051753: mannan synthase activity3.62E-03
76GO:0102391: decanoate--CoA ligase activity3.62E-03
77GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.62E-03
78GO:0019899: enzyme binding4.26E-03
79GO:0004467: long-chain fatty acid-CoA ligase activity4.26E-03
80GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.97E-03
81GO:0016798: hydrolase activity, acting on glycosyl bonds5.33E-03
82GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.67E-03
83GO:0016844: strictosidine synthase activity7.22E-03
84GO:0015386: potassium:proton antiporter activity8.90E-03
85GO:0015198: oligopeptide transporter activity9.79E-03
86GO:0010329: auxin efflux transmembrane transporter activity1.07E-02
87GO:0005315: inorganic phosphate transmembrane transporter activity1.07E-02
88GO:0031072: heat shock protein binding1.07E-02
89GO:0000155: phosphorelay sensor kinase activity1.07E-02
90GO:0003774: motor activity1.17E-02
91GO:0008146: sulfotransferase activity1.26E-02
92GO:0051119: sugar transmembrane transporter activity1.26E-02
93GO:0003690: double-stranded DNA binding1.35E-02
94GO:0015079: potassium ion transmembrane transporter activity1.58E-02
95GO:0005215: transporter activity1.61E-02
96GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.80E-02
97GO:0016760: cellulose synthase (UDP-forming) activity1.91E-02
98GO:0004871: signal transducer activity1.99E-02
99GO:0019843: rRNA binding2.34E-02
100GO:0005507: copper ion binding2.45E-02
101GO:0019825: oxygen binding2.45E-02
102GO:0015299: solute:proton antiporter activity2.52E-02
103GO:0050662: coenzyme binding2.52E-02
104GO:0010181: FMN binding2.52E-02
105GO:0030170: pyridoxal phosphate binding2.59E-02
106GO:0004872: receptor activity2.65E-02
107GO:0005525: GTP binding3.03E-02
108GO:0016759: cellulose synthase activity3.19E-02
109GO:0016722: oxidoreductase activity, oxidizing metal ions3.33E-02
110GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.33E-02
111GO:0016597: amino acid binding3.47E-02
112GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.21E-02
113GO:0016757: transferase activity, transferring glycosyl groups4.36E-02
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Gene type



Gene DE type