co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G06960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901698: response to nitrogen compound	0.00E+00
2	GO:0010305: leaf vascular tissue pattern formation	2.83E-06
3	GO:0048016: inositol phosphate-mediated signaling	3.37E-05
4	GO:0033206: meiotic cytokinesis	3.37E-05
5	GO:0009944: polarity specification of adaxial/abaxial axis	7.06E-05
6	GO:0018022: peptidyl-lysine methylation	8.48E-05
7	GO:0071705: nitrogen compound transport	1.47E-04
8	GO:0010589: leaf proximal/distal pattern formation	1.47E-04
9	GO:0009855: determination of bilateral symmetry	2.18E-04
10	GO:0071249: cellular response to nitrate	2.95E-04
11	GO:0035279: mRNA cleavage involved in gene silencing by miRNA	2.95E-04
12	GO:1902183: regulation of shoot apical meristem development	3.77E-04
13	GO:0032957: inositol trisphosphate metabolic process	3.77E-04
14	GO:0009616: virus induced gene silencing	3.77E-04
15	GO:0042176: regulation of protein catabolic process	4.63E-04
16	GO:0046855: inositol phosphate dephosphorylation	4.63E-04
17	GO:0009955: adaxial/abaxial pattern specification	5.53E-04
18	GO:0080060: integument development	5.53E-04
19	GO:0010067: procambium histogenesis	5.53E-04
20	GO:2000033: regulation of seed dormancy process	5.53E-04
21	GO:0010014: meristem initiation	5.53E-04
22	GO:0009082: branched-chain amino acid biosynthetic process	5.53E-04
23	GO:0009099: valine biosynthetic process	5.53E-04
24	GO:0035196: production of miRNAs involved in gene silencing by miRNA	6.47E-04
25	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	7.44E-04
26	GO:0010093: specification of floral organ identity	8.45E-04
27	GO:0001510: RNA methylation	8.45E-04
28	GO:0006261: DNA-dependent DNA replication	8.45E-04
29	GO:0009097: isoleucine biosynthetic process	8.45E-04
30	GO:0048507: meristem development	9.49E-04
31	GO:2000024: regulation of leaf development	9.49E-04
32	GO:0009740: gibberellic acid mediated signaling pathway	1.04E-03
33	GO:0030422: production of siRNA involved in RNA interference	1.17E-03
34	GO:0046856: phosphatidylinositol dephosphorylation	1.28E-03
35	GO:0010072: primary shoot apical meristem specification	1.28E-03
36	GO:0015706: nitrate transport	1.40E-03
37	GO:0006412: translation	1.51E-03
38	GO:0010588: cotyledon vascular tissue pattern formation	1.52E-03
39	GO:0010167: response to nitrate	1.78E-03
40	GO:0009863: salicylic acid mediated signaling pathway	2.05E-03
41	GO:0010187: negative regulation of seed germination	2.05E-03
42	GO:2000377: regulation of reactive oxygen species metabolic process	2.05E-03
43	GO:0009686: gibberellin biosynthetic process	2.63E-03
44	GO:0006284: base-excision repair	2.78E-03
45	GO:0009658: chloroplast organization	2.85E-03
46	GO:0010051: xylem and phloem pattern formation	3.09E-03
47	GO:0046323: glucose import	3.25E-03
48	GO:0009567: double fertilization forming a zygote and endosperm	4.28E-03
49	GO:0009639: response to red or far red light	4.28E-03
50	GO:0010029: regulation of seed germination	5.02E-03
51	GO:0010218: response to far red light	6.20E-03
52	GO:0009910: negative regulation of flower development	6.40E-03
53	GO:0009867: jasmonic acid mediated signaling pathway	6.82E-03
54	GO:0009640: photomorphogenesis	8.14E-03
55	GO:0010114: response to red light	8.14E-03
56	GO:0009416: response to light stimulus	9.19E-03
57	GO:0042538: hyperosmotic salinity response	9.54E-03
58	GO:0009909: regulation of flower development	1.08E-02
59	GO:0009790: embryo development	1.68E-02
60	GO:0071555: cell wall organization	1.87E-02
61	GO:0030154: cell differentiation	2.03E-02
62	GO:0009739: response to gibberellin	2.05E-02
63	GO:0042254: ribosome biogenesis	2.62E-02
64	GO:0005975: carbohydrate metabolic process	2.84E-02
65	GO:0009723: response to ethylene	2.87E-02
66	GO:0080167: response to karrikin	3.01E-02
67	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.08E-02
68	GO:0006355: regulation of transcription, DNA-templated	3.12E-02
69	GO:0006351: transcription, DNA-templated	3.50E-02
70	GO:0009737: response to abscisic acid	3.97E-02
71	GO:0006281: DNA repair	3.97E-02
72	GO:0048364: root development	4.10E-02
73	GO:0009793: embryo development ending in seed dormancy	4.31E-02

Rank	GO Term	Adjusted P value
1	GO:0004455: ketol-acid reductoisomerase activity	0.00E+00
2	GO:0046030: inositol trisphosphate phosphatase activity	3.37E-05
3	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.47E-04
4	GO:0004180: carboxypeptidase activity	1.47E-04
5	GO:0016805: dipeptidase activity	1.47E-04
6	GO:0005354: galactose transmembrane transporter activity	2.18E-04
7	GO:0003735: structural constituent of ribosome	2.73E-04
8	GO:0016279: protein-lysine N-methyltransferase activity	2.95E-04
9	GO:0008725: DNA-3-methyladenine glycosylase activity	3.77E-04
10	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	4.63E-04
11	GO:0008173: RNA methyltransferase activity	8.45E-04
12	GO:0000989: transcription factor activity, transcription factor binding	9.49E-04
13	GO:0004650: polygalacturonase activity	1.01E-03
14	GO:0008171: O-methyltransferase activity	1.17E-03
15	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.40E-03
16	GO:0016829: lyase activity	1.47E-03
17	GO:0008134: transcription factor binding	2.05E-03
18	GO:0004527: exonuclease activity	3.25E-03
19	GO:0005355: glucose transmembrane transporter activity	3.42E-03
20	GO:0016759: cellulose synthase activity	4.28E-03
21	GO:0004871: signal transducer activity	4.41E-03
22	GO:0003697: single-stranded DNA binding	6.82E-03
23	GO:0015144: carbohydrate transmembrane transporter activity	1.71E-02
24	GO:0003677: DNA binding	1.75E-02
25	GO:0005351: sugar:proton symporter activity	1.86E-02
26	GO:0016787: hydrolase activity	4.00E-02