co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G05385

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
2	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
3	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
4	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0015979: photosynthesis	1.21E-18
7	GO:0009773: photosynthetic electron transport in photosystem I	3.69E-09
8	GO:0010207: photosystem II assembly	8.90E-07
9	GO:0015995: chlorophyll biosynthetic process	1.88E-06
10	GO:0009735: response to cytokinin	1.93E-06
11	GO:0009768: photosynthesis, light harvesting in photosystem I	2.42E-06
12	GO:0018298: protein-chromophore linkage	2.48E-06
13	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.65E-06
14	GO:0032544: plastid translation	6.50E-06
15	GO:0006000: fructose metabolic process	9.64E-06
16	GO:0006810: transport	2.95E-05
17	GO:0006094: gluconeogenesis	3.25E-05
18	GO:0019253: reductive pentose-phosphate cycle	3.98E-05
19	GO:0010600: regulation of auxin biosynthetic process	3.99E-05
20	GO:0006636: unsaturated fatty acid biosynthetic process	5.69E-05
21	GO:0010114: response to red light	1.28E-04
22	GO:0009854: oxidative photosynthetic carbon pathway	1.29E-04
23	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.29E-04
24	GO:0009645: response to low light intensity stimulus	1.69E-04
25	GO:0010196: nonphotochemical quenching	1.69E-04
26	GO:0009704: de-etiolation	2.16E-04
27	GO:0010928: regulation of auxin mediated signaling pathway	2.16E-04
28	GO:0051775: response to redox state	2.39E-04
29	GO:0071277: cellular response to calcium ion	2.39E-04
30	GO:1904966: positive regulation of vitamin E biosynthetic process	2.39E-04
31	GO:1904964: positive regulation of phytol biosynthetic process	2.39E-04
32	GO:0065002: intracellular protein transmembrane transport	2.39E-04
33	GO:0080093: regulation of photorespiration	2.39E-04
34	GO:0031998: regulation of fatty acid beta-oxidation	2.39E-04
35	GO:0034337: RNA folding	2.39E-04
36	GO:0019510: S-adenosylhomocysteine catabolic process	2.39E-04
37	GO:0043953: protein transport by the Tat complex	2.39E-04
38	GO:0006002: fructose 6-phosphate metabolic process	2.67E-04
39	GO:0009657: plastid organization	2.67E-04
40	GO:0055114: oxidation-reduction process	2.93E-04
41	GO:0009658: chloroplast organization	3.28E-04
42	GO:0018119: peptidyl-cysteine S-nitrosylation	5.19E-04
43	GO:0033353: S-adenosylmethionine cycle	5.29E-04
44	GO:0008616: queuosine biosynthetic process	5.29E-04
45	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.29E-04
46	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.29E-04
47	GO:0010218: response to far red light	6.55E-04
48	GO:0006108: malate metabolic process	6.71E-04
49	GO:0009767: photosynthetic electron transport chain	6.71E-04
50	GO:0005986: sucrose biosynthetic process	6.71E-04
51	GO:0009637: response to blue light	7.79E-04
52	GO:0090391: granum assembly	8.60E-04
53	GO:0006518: peptide metabolic process	8.60E-04
54	GO:0044375: regulation of peroxisome size	8.60E-04
55	GO:0032259: methylation	8.99E-04
56	GO:0010731: protein glutathionylation	1.23E-03
57	GO:1901332: negative regulation of lateral root development	1.23E-03
58	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.23E-03
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.23E-03
60	GO:0071484: cellular response to light intensity	1.23E-03
61	GO:0006107: oxaloacetate metabolic process	1.23E-03
62	GO:0019748: secondary metabolic process	1.36E-03
63	GO:0009409: response to cold	1.48E-03
64	GO:0006546: glycine catabolic process	1.64E-03
65	GO:0006734: NADH metabolic process	1.64E-03
66	GO:0015976: carbon utilization	1.64E-03
67	GO:0009765: photosynthesis, light harvesting	1.64E-03
68	GO:0006109: regulation of carbohydrate metabolic process	1.64E-03
69	GO:0045727: positive regulation of translation	1.64E-03
70	GO:0015994: chlorophyll metabolic process	1.64E-03
71	GO:0006536: glutamate metabolic process	1.64E-03
72	GO:0042631: cellular response to water deprivation	1.89E-03
73	GO:0006662: glycerol ether metabolic process	2.03E-03
74	GO:0006656: phosphatidylcholine biosynthetic process	2.09E-03
75	GO:0043097: pyrimidine nucleoside salvage	2.09E-03
76	GO:0006097: glyoxylate cycle	2.09E-03
77	GO:0006461: protein complex assembly	2.09E-03
78	GO:0009107: lipoate biosynthetic process	2.09E-03
79	GO:0006206: pyrimidine nucleobase metabolic process	2.57E-03
80	GO:0010190: cytochrome b6f complex assembly	2.57E-03
81	GO:0050665: hydrogen peroxide biosynthetic process	2.57E-03
82	GO:0042549: photosystem II stabilization	2.57E-03
83	GO:0042742: defense response to bacterium	2.68E-03
84	GO:0045926: negative regulation of growth	3.09E-03
85	GO:1901259: chloroplast rRNA processing	3.09E-03
86	GO:0010189: vitamin E biosynthetic process	3.09E-03
87	GO:0010027: thylakoid membrane organization	3.61E-03
88	GO:1900057: positive regulation of leaf senescence	3.64E-03
89	GO:0010161: red light signaling pathway	3.64E-03
90	GO:0009772: photosynthetic electron transport in photosystem II	3.64E-03
91	GO:0016559: peroxisome fission	4.23E-03
92	GO:0048564: photosystem I assembly	4.23E-03
93	GO:0009642: response to light intensity	4.23E-03
94	GO:0071482: cellular response to light stimulus	4.84E-03
95	GO:0010206: photosystem II repair	5.48E-03
96	GO:0090333: regulation of stomatal closure	5.48E-03
97	GO:0006783: heme biosynthetic process	5.48E-03
98	GO:0006754: ATP biosynthetic process	5.48E-03
99	GO:0009853: photorespiration	5.96E-03
100	GO:0010205: photoinhibition	6.15E-03
101	GO:0006779: porphyrin-containing compound biosynthetic process	6.15E-03
102	GO:0034599: cellular response to oxidative stress	6.23E-03
103	GO:0006099: tricarboxylic acid cycle	6.23E-03
104	GO:0006782: protoporphyrinogen IX biosynthetic process	6.85E-03
105	GO:0043085: positive regulation of catalytic activity	7.58E-03
106	GO:0000272: polysaccharide catabolic process	7.58E-03
107	GO:0009698: phenylpropanoid metabolic process	7.58E-03
108	GO:0019684: photosynthesis, light reaction	7.58E-03
109	GO:0009644: response to high light intensity	8.31E-03
110	GO:0016925: protein sumoylation	8.33E-03
111	GO:0042254: ribosome biogenesis	8.66E-03
112	GO:0006807: nitrogen compound metabolic process	9.11E-03
113	GO:0018107: peptidyl-threonine phosphorylation	9.11E-03
114	GO:0009585: red, far-red light phototransduction	1.04E-02
115	GO:0006364: rRNA processing	1.04E-02
116	GO:0007031: peroxisome organization	1.07E-02
117	GO:0005985: sucrose metabolic process	1.07E-02
118	GO:0000027: ribosomal large subunit assembly	1.25E-02
119	GO:0045454: cell redox homeostasis	1.40E-02
120	GO:0061077: chaperone-mediated protein folding	1.43E-02
121	GO:0031408: oxylipin biosynthetic process	1.43E-02
122	GO:0006730: one-carbon metabolic process	1.53E-02
123	GO:0030433: ubiquitin-dependent ERAD pathway	1.53E-02
124	GO:0010017: red or far-red light signaling pathway	1.53E-02
125	GO:0009693: ethylene biosynthetic process	1.62E-02
126	GO:0019722: calcium-mediated signaling	1.72E-02
127	GO:0000413: protein peptidyl-prolyl isomerization	1.93E-02
128	GO:0006606: protein import into nucleus	1.93E-02
129	GO:0009741: response to brassinosteroid	2.03E-02
130	GO:0015986: ATP synthesis coupled proton transport	2.14E-02
131	GO:0006814: sodium ion transport	2.14E-02
132	GO:0019252: starch biosynthetic process	2.25E-02
133	GO:0006412: translation	2.66E-02
134	GO:0009567: double fertilization forming a zygote and endosperm	2.71E-02
135	GO:0007267: cell-cell signaling	2.83E-02
136	GO:0042128: nitrate assimilation	3.32E-02
137	GO:0010411: xyloglucan metabolic process	3.45E-02
138	GO:0006950: response to stress	3.45E-02
139	GO:0009416: response to light stimulus	3.73E-02
140	GO:0010311: lateral root formation	3.84E-02
141	GO:0007568: aging	4.11E-02
142	GO:0016051: carbohydrate biosynthetic process	4.39E-02
143	GO:0030001: metal ion transport	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
4	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
5	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
6	GO:0008974: phosphoribulokinase activity	0.00E+00
7	GO:0008465: glycerate dehydrogenase activity	0.00E+00
8	GO:0046408: chlorophyll synthetase activity	0.00E+00
9	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
10	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
11	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
12	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
13	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
14	GO:0030794: (S)-coclaurine-N-methyltransferase activity	0.00E+00
15	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
16	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
17	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
18	GO:0090711: FMN hydrolase activity	0.00E+00
19	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
20	GO:0016168: chlorophyll binding	1.41E-06
21	GO:0031409: pigment binding	1.51E-06
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.65E-06
23	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.65E-06
24	GO:0019843: rRNA binding	7.02E-05
25	GO:0016615: malate dehydrogenase activity	9.33E-05
26	GO:0030060: L-malate dehydrogenase activity	1.29E-04
27	GO:0008746: NAD(P)+ transhydrogenase activity	2.39E-04
28	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.39E-04
29	GO:0004013: adenosylhomocysteinase activity	2.39E-04
30	GO:0048038: quinone binding	2.51E-04
31	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.67E-04
32	GO:0030234: enzyme regulator activity	4.48E-04
33	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.29E-04
34	GO:0008883: glutamyl-tRNA reductase activity	5.29E-04
35	GO:0047746: chlorophyllase activity	5.29E-04
36	GO:0042389: omega-3 fatty acid desaturase activity	5.29E-04
37	GO:0010297: heteropolysaccharide binding	5.29E-04
38	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.29E-04
39	GO:0004047: aminomethyltransferase activity	5.29E-04
40	GO:0008479: queuine tRNA-ribosyltransferase activity	5.29E-04
41	GO:0018708: thiol S-methyltransferase activity	5.29E-04
42	GO:0031072: heat shock protein binding	6.71E-04
43	GO:0019948: SUMO activating enzyme activity	8.60E-04
44	GO:0010277: chlorophyllide a oxygenase [overall] activity	8.60E-04
45	GO:0016992: lipoate synthase activity	8.60E-04
46	GO:0005528: FK506 binding	1.04E-03
47	GO:0004185: serine-type carboxypeptidase activity	1.07E-03
48	GO:0051537: 2 iron, 2 sulfur cluster binding	1.17E-03
49	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.23E-03
50	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.23E-03
51	GO:0004351: glutamate decarboxylase activity	1.23E-03
52	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.23E-03
53	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.23E-03
54	GO:0042802: identical protein binding	1.26E-03
55	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.29E-03
56	GO:0016491: oxidoreductase activity	1.40E-03
57	GO:0008168: methyltransferase activity	1.61E-03
58	GO:0043495: protein anchor	1.64E-03
59	GO:0008891: glycolate oxidase activity	1.64E-03
60	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.64E-03
61	GO:0008453: alanine-glyoxylate transaminase activity	1.64E-03
62	GO:0047134: protein-disulfide reductase activity	1.75E-03
63	GO:0004791: thioredoxin-disulfide reductase activity	2.18E-03
64	GO:0042578: phosphoric ester hydrolase activity	2.57E-03
65	GO:0004332: fructose-bisphosphate aldolase activity	2.57E-03
66	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.85E-03
67	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.09E-03
68	GO:0004849: uridine kinase activity	3.09E-03
69	GO:0003735: structural constituent of ribosome	3.45E-03
70	GO:0019899: enzyme binding	3.64E-03
71	GO:0004033: aldo-keto reductase (NADP) activity	4.23E-03
72	GO:0009055: electron carrier activity	4.76E-03
73	GO:0071949: FAD binding	5.48E-03
74	GO:0008047: enzyme activator activity	6.85E-03
75	GO:0043621: protein self-association	8.31E-03
76	GO:0005315: inorganic phosphate transmembrane transporter activity	9.11E-03
77	GO:0004089: carbonate dehydratase activity	9.11E-03
78	GO:0051287: NAD binding	9.31E-03
79	GO:0008266: poly(U) RNA binding	9.92E-03
80	GO:0005515: protein binding	1.06E-02
81	GO:0004857: enzyme inhibitor activity	1.25E-02
82	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.27E-02
83	GO:0043424: protein histidine kinase binding	1.34E-02
84	GO:0051082: unfolded protein binding	1.48E-02
85	GO:0015035: protein disulfide oxidoreductase activity	1.52E-02
86	GO:0022891: substrate-specific transmembrane transporter activity	1.62E-02
87	GO:0003727: single-stranded RNA binding	1.72E-02
88	GO:0008514: organic anion transmembrane transporter activity	1.72E-02
89	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.03E-02
90	GO:0010181: FMN binding	2.14E-02
91	GO:0050662: coenzyme binding	2.14E-02
92	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.36E-02
93	GO:0008483: transaminase activity	2.83E-02
94	GO:0016787: hydrolase activity	3.33E-02
95	GO:0004721: phosphoprotein phosphatase activity	3.45E-02
96	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.45E-02
97	GO:0004222: metalloendopeptidase activity	3.97E-02
98	GO:0003746: translation elongation factor activity	4.39E-02
99	GO:0003993: acid phosphatase activity	4.53E-02
100	GO:0050661: NADP binding	4.81E-02