Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G04250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
2GO:0006982: response to lipid hydroperoxide0.00E+00
3GO:0010335: response to non-ionic osmotic stress0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0005996: monosaccharide metabolic process0.00E+00
8GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
9GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
10GO:0046471: phosphatidylglycerol metabolic process0.00E+00
11GO:0015979: photosynthesis1.63E-16
12GO:0018298: protein-chromophore linkage2.18E-09
13GO:0010207: photosystem II assembly2.67E-09
14GO:0009768: photosynthesis, light harvesting in photosystem I1.24E-08
15GO:0015995: chlorophyll biosynthetic process4.27E-08
16GO:0009773: photosynthetic electron transport in photosystem I4.97E-08
17GO:0055114: oxidation-reduction process5.47E-07
18GO:0032544: plastid translation5.69E-07
19GO:0030388: fructose 1,6-bisphosphate metabolic process9.09E-06
20GO:1902326: positive regulation of chlorophyll biosynthetic process9.09E-06
21GO:0006636: unsaturated fatty acid biosynthetic process1.16E-05
22GO:0009735: response to cytokinin1.23E-05
23GO:0009645: response to low light intensity stimulus1.48E-05
24GO:0006000: fructose metabolic process3.12E-05
25GO:0032259: methylation6.83E-05
26GO:0009658: chloroplast organization7.89E-05
27GO:0010114: response to red light8.04E-05
28GO:0009765: photosynthesis, light harvesting1.18E-04
29GO:0015994: chlorophyll metabolic process1.18E-04
30GO:0010600: regulation of auxin biosynthetic process1.18E-04
31GO:0006094: gluconeogenesis1.36E-04
32GO:0019253: reductive pentose-phosphate cycle1.63E-04
33GO:0006810: transport2.31E-04
34GO:0010218: response to far red light3.23E-04
35GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.46E-04
36GO:0010189: vitamin E biosynthetic process3.46E-04
37GO:0009854: oxidative photosynthetic carbon pathway3.46E-04
38GO:0009637: response to blue light4.04E-04
39GO:0034599: cellular response to oxidative stress4.33E-04
40GO:0010196: nonphotochemical quenching4.45E-04
41GO:0031998: regulation of fatty acid beta-oxidation4.53E-04
42GO:0034337: RNA folding4.53E-04
43GO:0019510: S-adenosylhomocysteine catabolic process4.53E-04
44GO:0051180: vitamin transport4.53E-04
45GO:0030974: thiamine pyrophosphate transport4.53E-04
46GO:0046467: membrane lipid biosynthetic process4.53E-04
47GO:0043953: protein transport by the Tat complex4.53E-04
48GO:0010426: DNA methylation on cytosine within a CHH sequence4.53E-04
49GO:0065002: intracellular protein transmembrane transport4.53E-04
50GO:0051775: response to redox state4.53E-04
51GO:0071277: cellular response to calcium ion4.53E-04
52GO:0043087: regulation of GTPase activity4.53E-04
53GO:0071461: cellular response to redox state4.53E-04
54GO:0080093: regulation of photorespiration4.53E-04
55GO:0043007: maintenance of rDNA4.53E-04
56GO:0010928: regulation of auxin mediated signaling pathway5.55E-04
57GO:0009704: de-etiolation5.55E-04
58GO:0006002: fructose 6-phosphate metabolic process6.77E-04
59GO:0071482: cellular response to light stimulus6.77E-04
60GO:0019252: starch biosynthetic process7.77E-04
61GO:0006783: heme biosynthetic process8.12E-04
62GO:0006754: ATP biosynthetic process8.12E-04
63GO:0006779: porphyrin-containing compound biosynthetic process9.56E-04
64GO:0006729: tetrahydrobiopterin biosynthetic process9.79E-04
65GO:0080005: photosystem stoichiometry adjustment9.79E-04
66GO:0042819: vitamin B6 biosynthetic process9.79E-04
67GO:0033353: S-adenosylmethionine cycle9.79E-04
68GO:0015893: drug transport9.79E-04
69GO:0008616: queuosine biosynthetic process9.79E-04
70GO:0018119: peptidyl-cysteine S-nitrosylation1.28E-03
71GO:0010027: thylakoid membrane organization1.34E-03
72GO:0090391: granum assembly1.59E-03
73GO:0006518: peptide metabolic process1.59E-03
74GO:0044375: regulation of peroxisome size1.59E-03
75GO:0006081: cellular aldehyde metabolic process1.59E-03
76GO:0009767: photosynthetic electron transport chain1.67E-03
77GO:0005986: sucrose biosynthetic process1.67E-03
78GO:0006108: malate metabolic process1.67E-03
79GO:0007031: peroxisome organization2.11E-03
80GO:0071484: cellular response to light intensity2.31E-03
81GO:0009152: purine ribonucleotide biosynthetic process2.31E-03
82GO:0046653: tetrahydrofolate metabolic process2.31E-03
83GO:0006107: oxaloacetate metabolic process2.31E-03
84GO:0033014: tetrapyrrole biosynthetic process2.31E-03
85GO:0008615: pyridoxine biosynthetic process2.31E-03
86GO:0010731: protein glutathionylation2.31E-03
87GO:0042823: pyridoxal phosphate biosynthetic process2.31E-03
88GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.31E-03
89GO:2001141: regulation of RNA biosynthetic process2.31E-03
90GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.31E-03
91GO:0009853: photorespiration2.55E-03
92GO:0015976: carbon utilization3.10E-03
93GO:0015689: molybdate ion transport3.10E-03
94GO:0045727: positive regulation of translation3.10E-03
95GO:0006536: glutamate metabolic process3.10E-03
96GO:0006546: glycine catabolic process3.10E-03
97GO:0006734: NADH metabolic process3.10E-03
98GO:0010021: amylopectin biosynthetic process3.10E-03
99GO:0019748: secondary metabolic process3.47E-03
100GO:0009644: response to high light intensity3.90E-03
101GO:0009107: lipoate biosynthetic process3.98E-03
102GO:0006465: signal peptide processing3.98E-03
103GO:0006656: phosphatidylcholine biosynthetic process3.98E-03
104GO:0043097: pyrimidine nucleoside salvage3.98E-03
105GO:0006097: glyoxylate cycle3.98E-03
106GO:0009409: response to cold4.41E-03
107GO:0042631: cellular response to water deprivation4.82E-03
108GO:0042549: photosystem II stabilization4.92E-03
109GO:0010190: cytochrome b6f complex assembly4.92E-03
110GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.92E-03
111GO:0006206: pyrimidine nucleobase metabolic process4.92E-03
112GO:0050665: hydrogen peroxide biosynthetic process4.92E-03
113GO:0009585: red, far-red light phototransduction5.17E-03
114GO:0006520: cellular amino acid metabolic process5.20E-03
115GO:0006662: glycerol ether metabolic process5.20E-03
116GO:0045926: negative regulation of growth5.94E-03
117GO:0017148: negative regulation of translation5.94E-03
118GO:1901259: chloroplast rRNA processing5.94E-03
119GO:0010161: red light signaling pathway7.03E-03
120GO:0009772: photosynthetic electron transport in photosystem II7.03E-03
121GO:0016559: peroxisome fission8.18E-03
122GO:0042255: ribosome assembly8.18E-03
123GO:0006353: DNA-templated transcription, termination8.18E-03
124GO:0009932: cell tip growth9.38E-03
125GO:0006526: arginine biosynthetic process9.38E-03
126GO:0009657: plastid organization9.38E-03
127GO:0010206: photosystem II repair1.07E-02
128GO:0090333: regulation of stomatal closure1.07E-02
129GO:0010205: photoinhibition1.20E-02
130GO:0042761: very long-chain fatty acid biosynthetic process1.20E-02
131GO:0006782: protoporphyrinogen IX biosynthetic process1.34E-02
132GO:0043069: negative regulation of programmed cell death1.34E-02
133GO:0019684: photosynthesis, light reaction1.48E-02
134GO:0009698: phenylpropanoid metabolic process1.48E-02
135GO:0006352: DNA-templated transcription, initiation1.48E-02
136GO:0000272: polysaccharide catabolic process1.48E-02
137GO:0005975: carbohydrate metabolic process1.51E-02
138GO:0006099: tricarboxylic acid cycle1.62E-02
139GO:0042742: defense response to bacterium1.74E-02
140GO:0009725: response to hormone1.79E-02
141GO:0006807: nitrogen compound metabolic process1.79E-02
142GO:0018107: peptidyl-threonine phosphorylation1.79E-02
143GO:0009266: response to temperature stimulus1.95E-02
144GO:0034605: cellular response to heat1.95E-02
145GO:0005985: sucrose metabolic process2.12E-02
146GO:0009636: response to toxic substance2.25E-02
147GO:0019762: glucosinolate catabolic process2.29E-02
148GO:0009833: plant-type primary cell wall biogenesis2.29E-02
149GO:0000027: ribosomal large subunit assembly2.46E-02
150GO:0061077: chaperone-mediated protein folding2.82E-02
151GO:0031408: oxylipin biosynthetic process2.82E-02
152GO:0006306: DNA methylation2.82E-02
153GO:0042254: ribosome biogenesis2.89E-02
154GO:0010017: red or far-red light signaling pathway3.01E-02
155GO:0016226: iron-sulfur cluster assembly3.01E-02
156GO:0030433: ubiquitin-dependent ERAD pathway3.01E-02
157GO:0007005: mitochondrion organization3.01E-02
158GO:0006730: one-carbon metabolic process3.01E-02
159GO:0043086: negative regulation of catalytic activity3.20E-02
160GO:0009693: ethylene biosynthetic process3.20E-02
161GO:0006817: phosphate ion transport3.40E-02
162GO:0019722: calcium-mediated signaling3.40E-02
163GO:0009306: protein secretion3.40E-02
164GO:0009561: megagametogenesis3.40E-02
165GO:0006606: protein import into nucleus3.81E-02
166GO:0006396: RNA processing3.96E-02
167GO:0009741: response to brassinosteroid4.01E-02
168GO:0009742: brassinosteroid mediated signaling pathway4.07E-02
169GO:0009646: response to absence of light4.23E-02
170GO:0015986: ATP synthesis coupled proton transport4.23E-02
171GO:0006814: sodium ion transport4.23E-02
172GO:0006412: translation4.42E-02
173GO:0045454: cell redox homeostasis4.60E-02
174GO:0006979: response to oxidative stress4.63E-02
175GO:0000302: response to reactive oxygen species4.66E-02
176GO:0032502: developmental process4.88E-02
177GO:0010583: response to cyclopentenone4.88E-02
RankGO TermAdjusted P value
1GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
2GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
3GO:0050342: tocopherol O-methyltransferase activity0.00E+00
4GO:0050281: serine-glyoxylate transaminase activity0.00E+00
5GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
6GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity0.00E+00
7GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
8GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
9GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
10GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
11GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
12GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
13GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
14GO:0090711: FMN hydrolase activity0.00E+00
15GO:0045550: geranylgeranyl reductase activity0.00E+00
16GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
17GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
18GO:0008974: phosphoribulokinase activity0.00E+00
19GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
20GO:0004760: serine-pyruvate transaminase activity0.00E+00
21GO:0008465: glycerate dehydrogenase activity0.00E+00
22GO:0046408: chlorophyll synthetase activity0.00E+00
23GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
24GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
25GO:0016168: chlorophyll binding8.76E-10
26GO:0031409: pigment binding6.02E-09
27GO:0031072: heat shock protein binding5.31E-06
28GO:0016491: oxidoreductase activity8.57E-06
29GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.09E-06
30GO:0018708: thiol S-methyltransferase activity9.09E-06
31GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.09E-06
32GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water3.12E-05
33GO:0019843: rRNA binding7.37E-05
34GO:0009011: starch synthase activity1.18E-04
35GO:0043495: protein anchor1.18E-04
36GO:0016615: malate dehydrogenase activity2.58E-04
37GO:0030060: L-malate dehydrogenase activity3.46E-04
38GO:0019899: enzyme binding4.45E-04
39GO:0035671: enone reductase activity4.53E-04
40GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.53E-04
41GO:0090422: thiamine pyrophosphate transporter activity4.53E-04
42GO:0004013: adenosylhomocysteinase activity4.53E-04
43GO:0080132: fatty acid alpha-hydroxylase activity4.53E-04
44GO:0004325: ferrochelatase activity4.53E-04
45GO:0008746: NAD(P)+ transhydrogenase activity4.53E-04
46GO:0010313: phytochrome binding4.53E-04
47GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.53E-04
48GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.53E-04
49GO:0048038: quinone binding8.46E-04
50GO:0010297: heteropolysaccharide binding9.79E-04
51GO:0009977: proton motive force dependent protein transmembrane transporter activity9.79E-04
52GO:0004047: aminomethyltransferase activity9.79E-04
53GO:0033201: alpha-1,4-glucan synthase activity9.79E-04
54GO:0008479: queuine tRNA-ribosyltransferase activity9.79E-04
55GO:0000234: phosphoethanolamine N-methyltransferase activity9.79E-04
56GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity9.79E-04
57GO:0008883: glutamyl-tRNA reductase activity9.79E-04
58GO:0047746: chlorophyllase activity9.79E-04
59GO:0042389: omega-3 fatty acid desaturase activity9.79E-04
60GO:0030234: enzyme regulator activity1.11E-03
61GO:0042802: identical protein binding1.25E-03
62GO:0010277: chlorophyllide a oxygenase [overall] activity1.59E-03
63GO:0004373: glycogen (starch) synthase activity1.59E-03
64GO:0016992: lipoate synthase activity1.59E-03
65GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.59E-03
66GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity1.59E-03
67GO:0008864: formyltetrahydrofolate deformylase activity1.59E-03
68GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.59E-03
69GO:0051082: unfolded protein binding1.61E-03
70GO:0008168: methyltransferase activity1.66E-03
71GO:0004565: beta-galactosidase activity1.67E-03
72GO:0005315: inorganic phosphate transmembrane transporter activity1.67E-03
73GO:0004351: glutamate decarboxylase activity2.31E-03
74GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.31E-03
75GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.31E-03
76GO:0048027: mRNA 5'-UTR binding2.31E-03
77GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.31E-03
78GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.31E-03
79GO:0016851: magnesium chelatase activity2.31E-03
80GO:0005528: FK506 binding2.61E-03
81GO:0001053: plastid sigma factor activity3.10E-03
82GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.10E-03
83GO:0008453: alanine-glyoxylate transaminase activity3.10E-03
84GO:0016987: sigma factor activity3.10E-03
85GO:0052793: pectin acetylesterase activity3.10E-03
86GO:0015098: molybdate ion transmembrane transporter activity3.10E-03
87GO:0008891: glycolate oxidase activity3.10E-03
88GO:0004185: serine-type carboxypeptidase activity3.53E-03
89GO:0022891: substrate-specific transmembrane transporter activity3.78E-03
90GO:0051537: 2 iron, 2 sulfur cluster binding3.90E-03
91GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen3.98E-03
92GO:0003727: single-stranded RNA binding4.12E-03
93GO:0003735: structural constituent of ribosome4.26E-03
94GO:0047134: protein-disulfide reductase activity4.46E-03
95GO:0051287: NAD binding4.51E-03
96GO:0004332: fructose-bisphosphate aldolase activity4.92E-03
97GO:0004029: aldehyde dehydrogenase (NAD) activity4.92E-03
98GO:0004130: cytochrome-c peroxidase activity4.92E-03
99GO:0035673: oligopeptide transmembrane transporter activity4.92E-03
100GO:0042578: phosphoric ester hydrolase activity4.92E-03
101GO:0004791: thioredoxin-disulfide reductase activity5.60E-03
102GO:0009055: electron carrier activity5.84E-03
103GO:0004849: uridine kinase activity5.94E-03
104GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.94E-03
105GO:0003886: DNA (cytosine-5-)-methyltransferase activity5.94E-03
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.33E-03
107GO:0004033: aldo-keto reductase (NADP) activity8.18E-03
108GO:0071949: FAD binding1.07E-02
109GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism1.07E-02
110GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.20E-02
111GO:0004222: metalloendopeptidase activity1.35E-02
112GO:0015198: oligopeptide transporter activity1.63E-02
113GO:0004089: carbonate dehydratase activity1.79E-02
114GO:0005515: protein binding1.91E-02
115GO:0004364: glutathione transferase activity1.92E-02
116GO:0008266: poly(U) RNA binding1.95E-02
117GO:0043621: protein self-association2.17E-02
118GO:0015293: symporter activity2.25E-02
119GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.34E-02
120GO:0051536: iron-sulfur cluster binding2.46E-02
121GO:0005507: copper ion binding2.56E-02
122GO:0003690: double-stranded DNA binding2.80E-02
123GO:0016760: cellulose synthase (UDP-forming) activity3.20E-02
124GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.30E-02
125GO:0008514: organic anion transmembrane transporter activity3.40E-02
126GO:0015035: protein disulfide oxidoreductase activity3.96E-02
127GO:0008080: N-acetyltransferase activity4.01E-02
128GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.01E-02
129GO:0052689: carboxylic ester hydrolase activity4.18E-02
130GO:0050662: coenzyme binding4.23E-02
131GO:0010181: FMN binding4.23E-02
132GO:0004872: receptor activity4.44E-02
133GO:0016762: xyloglucan:xyloglucosyl transferase activity4.66E-02
134GO:0042803: protein homodimerization activity4.87E-02
135GO:0004518: nuclease activity4.88E-02
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Gene type



Gene DE type