Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G04240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
2GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
3GO:0010068: protoderm histogenesis0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0031129: inductive cell-cell signaling0.00E+00
6GO:2001294: malonyl-CoA catabolic process0.00E+00
7GO:0015739: sialic acid transport0.00E+00
8GO:0010412: mannan metabolic process0.00E+00
9GO:0071311: cellular response to acetate0.00E+00
10GO:0015843: methylammonium transport0.00E+00
11GO:0070979: protein K11-linked ubiquitination0.00E+00
12GO:0071260: cellular response to mechanical stimulus0.00E+00
13GO:0043488: regulation of mRNA stability0.00E+00
14GO:0061157: mRNA destabilization0.00E+00
15GO:0090706: specification of plant organ position0.00E+00
16GO:0009733: response to auxin7.95E-08
17GO:0009903: chloroplast avoidance movement1.48E-05
18GO:0009734: auxin-activated signaling pathway2.11E-05
19GO:0046620: regulation of organ growth3.41E-05
20GO:0040008: regulation of growth4.31E-05
21GO:0031022: nuclear migration along microfilament4.33E-05
22GO:0009904: chloroplast accumulation movement2.42E-04
23GO:1902183: regulation of shoot apical meristem development2.42E-04
24GO:0010158: abaxial cell fate specification2.42E-04
25GO:0009082: branched-chain amino acid biosynthetic process4.54E-04
26GO:0009099: valine biosynthetic process4.54E-04
27GO:0010482: regulation of epidermal cell division5.43E-04
28GO:1902265: abscisic acid homeostasis5.43E-04
29GO:0071028: nuclear mRNA surveillance5.43E-04
30GO:0043266: regulation of potassium ion transport5.43E-04
31GO:0010480: microsporocyte differentiation5.43E-04
32GO:0043087: regulation of GTPase activity5.43E-04
33GO:2000021: regulation of ion homeostasis5.43E-04
34GO:0006264: mitochondrial DNA replication5.43E-04
35GO:0033259: plastid DNA replication5.43E-04
36GO:0000066: mitochondrial ornithine transport5.43E-04
37GO:0006177: GMP biosynthetic process5.43E-04
38GO:0010450: inflorescence meristem growth5.43E-04
39GO:0051171: regulation of nitrogen compound metabolic process5.43E-04
40GO:0009097: isoleucine biosynthetic process8.82E-04
41GO:2000024: regulation of leaf development1.05E-03
42GO:1900871: chloroplast mRNA modification1.17E-03
43GO:2000039: regulation of trichome morphogenesis1.17E-03
44GO:0007154: cell communication1.17E-03
45GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.17E-03
46GO:0071497: cellular response to freezing1.17E-03
47GO:0042814: monopolar cell growth1.17E-03
48GO:0031648: protein destabilization1.17E-03
49GO:0031125: rRNA 3'-end processing1.17E-03
50GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.17E-03
51GO:0034475: U4 snRNA 3'-end processing1.17E-03
52GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.20E-03
53GO:1900865: chloroplast RNA modification1.24E-03
54GO:0009638: phototropism1.24E-03
55GO:0006816: calcium ion transport1.67E-03
56GO:0007166: cell surface receptor signaling pathway1.69E-03
57GO:0019419: sulfate reduction1.92E-03
58GO:0071230: cellular response to amino acid stimulus1.92E-03
59GO:0031145: anaphase-promoting complex-dependent catabolic process1.92E-03
60GO:0045604: regulation of epidermal cell differentiation1.92E-03
61GO:0006753: nucleoside phosphate metabolic process1.92E-03
62GO:0006760: folic acid-containing compound metabolic process1.92E-03
63GO:0045165: cell fate commitment1.92E-03
64GO:0016075: rRNA catabolic process1.92E-03
65GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.92E-03
66GO:0051127: positive regulation of actin nucleation1.92E-03
67GO:1902448: positive regulation of shade avoidance1.92E-03
68GO:2000012: regulation of auxin polar transport2.18E-03
69GO:0010020: chloroplast fission2.46E-03
70GO:0044211: CTP salvage2.78E-03
71GO:0048645: animal organ formation2.78E-03
72GO:0010255: glucose mediated signaling pathway2.78E-03
73GO:0015696: ammonium transport2.78E-03
74GO:0048530: fruit morphogenesis2.78E-03
75GO:0046739: transport of virus in multicellular host2.78E-03
76GO:2000904: regulation of starch metabolic process2.78E-03
77GO:0006164: purine nucleotide biosynthetic process2.78E-03
78GO:0006168: adenine salvage2.78E-03
79GO:0043572: plastid fission2.78E-03
80GO:0046836: glycolipid transport2.78E-03
81GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.78E-03
82GO:0006166: purine ribonucleoside salvage2.78E-03
83GO:0007231: osmosensory signaling pathway2.78E-03
84GO:0030071: regulation of mitotic metaphase/anaphase transition2.78E-03
85GO:0051639: actin filament network formation2.78E-03
86GO:0009658: chloroplast organization2.89E-03
87GO:0007275: multicellular organism development3.37E-03
88GO:0010187: negative regulation of seed germination3.42E-03
89GO:0005992: trehalose biosynthetic process3.42E-03
90GO:0019344: cysteine biosynthetic process3.42E-03
91GO:0009944: polarity specification of adaxial/abaxial axis3.42E-03
92GO:0033500: carbohydrate homeostasis3.75E-03
93GO:0072488: ammonium transmembrane transport3.75E-03
94GO:0022622: root system development3.75E-03
95GO:0046656: folic acid biosynthetic process3.75E-03
96GO:0044206: UMP salvage3.75E-03
97GO:0009902: chloroplast relocation3.75E-03
98GO:0009165: nucleotide biosynthetic process3.75E-03
99GO:1901141: regulation of lignin biosynthetic process3.75E-03
100GO:0051764: actin crosslink formation3.75E-03
101GO:0015846: polyamine transport3.75E-03
102GO:0046355: mannan catabolic process3.75E-03
103GO:0006468: protein phosphorylation4.05E-03
104GO:0006839: mitochondrial transport4.28E-03
105GO:2000022: regulation of jasmonic acid mediated signaling pathway4.56E-03
106GO:0044209: AMP salvage4.81E-03
107GO:0032876: negative regulation of DNA endoreduplication4.81E-03
108GO:0009926: auxin polar transport5.01E-03
109GO:0010091: trichome branching5.41E-03
110GO:0016554: cytidine to uridine editing5.96E-03
111GO:0045962: positive regulation of development, heterochronic5.96E-03
112GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.96E-03
113GO:0006206: pyrimidine nucleobase metabolic process5.96E-03
114GO:0009117: nucleotide metabolic process5.96E-03
115GO:0000741: karyogamy5.96E-03
116GO:0009635: response to herbicide5.96E-03
117GO:0009959: negative gravitropism5.96E-03
118GO:0006139: nucleobase-containing compound metabolic process5.96E-03
119GO:0010087: phloem or xylem histogenesis6.35E-03
120GO:0009958: positive gravitropism6.85E-03
121GO:0042372: phylloquinone biosynthetic process7.20E-03
122GO:0046654: tetrahydrofolate biosynthetic process7.20E-03
123GO:0030488: tRNA methylation7.20E-03
124GO:0048444: floral organ morphogenesis7.20E-03
125GO:0080086: stamen filament development7.20E-03
126GO:0015937: coenzyme A biosynthetic process8.52E-03
127GO:0010050: vegetative phase change8.52E-03
128GO:0048437: floral organ development8.52E-03
129GO:0006400: tRNA modification8.52E-03
130GO:0030307: positive regulation of cell growth8.52E-03
131GO:0032880: regulation of protein localization8.52E-03
132GO:0010161: red light signaling pathway8.52E-03
133GO:0009610: response to symbiotic fungus8.52E-03
134GO:0009787: regulation of abscisic acid-activated signaling pathway9.92E-03
135GO:0009850: auxin metabolic process9.92E-03
136GO:0009690: cytokinin metabolic process9.92E-03
137GO:0042255: ribosome assembly9.92E-03
138GO:0010078: maintenance of root meristem identity9.92E-03
139GO:0006353: DNA-templated transcription, termination9.92E-03
140GO:0009704: de-etiolation9.92E-03
141GO:0070413: trehalose metabolism in response to stress9.92E-03
142GO:0032875: regulation of DNA endoreduplication9.92E-03
143GO:0009740: gibberellic acid mediated signaling pathway1.07E-02
144GO:0010497: plasmodesmata-mediated intercellular transport1.14E-02
145GO:0010100: negative regulation of photomorphogenesis1.14E-02
146GO:0006997: nucleus organization1.14E-02
147GO:0043562: cellular response to nitrogen levels1.14E-02
148GO:0010093: specification of floral organ identity1.14E-02
149GO:0010099: regulation of photomorphogenesis1.14E-02
150GO:0006002: fructose 6-phosphate metabolic process1.14E-02
151GO:0010029: regulation of seed germination1.30E-02
152GO:0006783: heme biosynthetic process1.30E-02
153GO:0000373: Group II intron splicing1.30E-02
154GO:0006189: 'de novo' IMP biosynthetic process1.30E-02
155GO:0015780: nucleotide-sugar transport1.30E-02
156GO:0051865: protein autoubiquitination1.30E-02
157GO:0009051: pentose-phosphate shunt, oxidative branch1.30E-02
158GO:0030154: cell differentiation1.35E-02
159GO:0009098: leucine biosynthetic process1.46E-02
160GO:0010018: far-red light signaling pathway1.46E-02
161GO:0010380: regulation of chlorophyll biosynthetic process1.46E-02
162GO:0042761: very long-chain fatty acid biosynthetic process1.46E-02
163GO:0030244: cellulose biosynthetic process1.61E-02
164GO:0006535: cysteine biosynthetic process from serine1.63E-02
165GO:0000103: sulfate assimilation1.63E-02
166GO:0045036: protein targeting to chloroplast1.63E-02
167GO:0009299: mRNA transcription1.63E-02
168GO:0009773: photosynthetic electron transport in photosystem I1.81E-02
169GO:1903507: negative regulation of nucleic acid-templated transcription1.81E-02
170GO:0006415: translational termination1.81E-02
171GO:0048229: gametophyte development1.81E-02
172GO:0009684: indoleacetic acid biosynthetic process1.81E-02
173GO:0048527: lateral root development1.87E-02
174GO:0010582: floral meristem determinacy1.99E-02
175GO:0009637: response to blue light2.05E-02
176GO:0030048: actin filament-based movement2.18E-02
177GO:0010588: cotyledon vascular tissue pattern formation2.18E-02
178GO:0010628: positive regulation of gene expression2.18E-02
179GO:0009785: blue light signaling pathway2.18E-02
180GO:0006006: glucose metabolic process2.18E-02
181GO:0030036: actin cytoskeleton organization2.18E-02
182GO:0010075: regulation of meristem growth2.18E-02
183GO:0009725: response to hormone2.18E-02
184GO:0009933: meristem structural organization2.37E-02
185GO:0009934: regulation of meristem structural organization2.37E-02
186GO:0048467: gynoecium development2.37E-02
187GO:0006631: fatty acid metabolic process2.44E-02
188GO:0090351: seedling development2.58E-02
189GO:0010030: positive regulation of seed germination2.58E-02
190GO:0070588: calcium ion transmembrane transport2.58E-02
191GO:0010025: wax biosynthetic process2.78E-02
192GO:0042753: positive regulation of circadian rhythm2.78E-02
193GO:0009833: plant-type primary cell wall biogenesis2.78E-02
194GO:0008643: carbohydrate transport2.86E-02
195GO:0009965: leaf morphogenesis2.97E-02
196GO:0007010: cytoskeleton organization3.00E-02
197GO:0051017: actin filament bundle assembly3.00E-02
198GO:0006874: cellular calcium ion homeostasis3.22E-02
199GO:0016310: phosphorylation3.23E-02
200GO:0009585: red, far-red light phototransduction3.56E-02
201GO:0035428: hexose transmembrane transport3.67E-02
202GO:0006730: one-carbon metabolic process3.67E-02
203GO:0080092: regulation of pollen tube growth3.67E-02
204GO:0010082: regulation of root meristem growth3.90E-02
205GO:0009686: gibberellin biosynthetic process3.90E-02
206GO:0019722: calcium-mediated signaling4.14E-02
207GO:0010214: seed coat development4.14E-02
208GO:0048367: shoot system development4.34E-02
209GO:0008284: positive regulation of cell proliferation4.39E-02
210GO:0070417: cellular response to cold4.39E-02
211GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.39E-02
212GO:0000226: microtubule cytoskeleton organization4.63E-02
213GO:0042335: cuticle development4.63E-02
214GO:0080022: primary root development4.63E-02
215GO:0008033: tRNA processing4.63E-02
216GO:0034220: ion transmembrane transport4.63E-02
217GO:0048653: anther development4.63E-02
218GO:0042631: cellular response to water deprivation4.63E-02
219GO:0009723: response to ethylene4.75E-02
220GO:0010154: fruit development4.89E-02
221GO:0010197: polar nucleus fusion4.89E-02
222GO:0010182: sugar mediated signaling pathway4.89E-02
223GO:0046323: glucose import4.89E-02
224GO:0008360: regulation of cell shape4.89E-02
RankGO TermAdjusted P value
1GO:0019808: polyamine binding0.00E+00
2GO:0015136: sialic acid transmembrane transporter activity0.00E+00
3GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
4GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0015276: ligand-gated ion channel activity0.00E+00
7GO:1990534: thermospermine oxidase activity0.00E+00
8GO:0019136: deoxynucleoside kinase activity0.00E+00
9GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
10GO:0005089: Rho guanyl-nucleotide exchange factor activity1.35E-04
11GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.54E-04
12GO:0008066: glutamate receptor activity5.43E-04
13GO:0005290: L-histidine transmembrane transporter activity5.43E-04
14GO:0003984: acetolactate synthase activity5.43E-04
15GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.43E-04
16GO:0010313: phytochrome binding5.43E-04
17GO:0050139: nicotinate-N-glucosyltransferase activity5.43E-04
18GO:0010945: CoA pyrophosphatase activity5.43E-04
19GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.17E-03
20GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.17E-03
21GO:0004150: dihydroneopterin aldolase activity1.17E-03
22GO:0000064: L-ornithine transmembrane transporter activity1.17E-03
23GO:0050017: L-3-cyanoalanine synthase activity1.17E-03
24GO:0017118: lipoyltransferase activity1.17E-03
25GO:0043425: bHLH transcription factor binding1.17E-03
26GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.17E-03
27GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.17E-03
28GO:0003938: IMP dehydrogenase activity1.17E-03
29GO:0102083: 7,8-dihydromonapterin aldolase activity1.17E-03
30GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.17E-03
31GO:0009973: adenylyl-sulfate reductase activity1.17E-03
32GO:0004805: trehalose-phosphatase activity1.45E-03
33GO:0070330: aromatase activity1.92E-03
34GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.92E-03
35GO:0005262: calcium channel activity2.18E-03
36GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.46E-03
37GO:0003999: adenine phosphoribosyltransferase activity2.78E-03
38GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity2.78E-03
39GO:0015181: arginine transmembrane transporter activity2.78E-03
40GO:0017172: cysteine dioxygenase activity2.78E-03
41GO:0052656: L-isoleucine transaminase activity2.78E-03
42GO:0052654: L-leucine transaminase activity2.78E-03
43GO:0052655: L-valine transaminase activity2.78E-03
44GO:0015189: L-lysine transmembrane transporter activity2.78E-03
45GO:0017089: glycolipid transporter activity2.78E-03
46GO:0000254: C-4 methylsterol oxidase activity2.78E-03
47GO:0035529: NADH pyrophosphatase activity2.78E-03
48GO:0004084: branched-chain-amino-acid transaminase activity3.75E-03
49GO:0004845: uracil phosphoribosyltransferase activity3.75E-03
50GO:0004737: pyruvate decarboxylase activity3.75E-03
51GO:0004345: glucose-6-phosphate dehydrogenase activity3.75E-03
52GO:0008409: 5'-3' exonuclease activity3.75E-03
53GO:0051861: glycolipid binding3.75E-03
54GO:0016985: mannan endo-1,4-beta-mannosidase activity3.75E-03
55GO:0080032: methyl jasmonate esterase activity3.75E-03
56GO:0016846: carbon-sulfur lyase activity4.81E-03
57GO:0016773: phosphotransferase activity, alcohol group as acceptor4.81E-03
58GO:0018685: alkane 1-monooxygenase activity4.81E-03
59GO:0030570: pectate lyase activity4.97E-03
60GO:0003727: single-stranded RNA binding5.41E-03
61GO:0043621: protein self-association5.54E-03
62GO:0000210: NAD+ diphosphatase activity5.96E-03
63GO:0016208: AMP binding5.96E-03
64GO:0016462: pyrophosphatase activity5.96E-03
65GO:0042578: phosphoric ester hydrolase activity5.96E-03
66GO:0008519: ammonium transmembrane transporter activity5.96E-03
67GO:0030976: thiamine pyrophosphate binding5.96E-03
68GO:0004709: MAP kinase kinase kinase activity5.96E-03
69GO:0004849: uridine kinase activity7.20E-03
70GO:0003730: mRNA 3'-UTR binding7.20E-03
71GO:0004124: cysteine synthase activity7.20E-03
72GO:0008195: phosphatidate phosphatase activity7.20E-03
73GO:0003872: 6-phosphofructokinase activity8.52E-03
74GO:0005338: nucleotide-sugar transmembrane transporter activity8.52E-03
75GO:0016301: kinase activity9.19E-03
76GO:0016788: hydrolase activity, acting on ester bonds1.14E-02
77GO:0003747: translation release factor activity1.30E-02
78GO:0004713: protein tyrosine kinase activity1.63E-02
79GO:0016829: lyase activity1.70E-02
80GO:0052689: carboxylic ester hydrolase activity1.78E-02
81GO:0008794: arsenate reductase (glutaredoxin) activity1.81E-02
82GO:0004674: protein serine/threonine kinase activity1.84E-02
83GO:0000976: transcription regulatory region sequence-specific DNA binding1.99E-02
84GO:0004871: signal transducer activity2.15E-02
85GO:0000175: 3'-5'-exoribonuclease activity2.18E-02
86GO:0004089: carbonate dehydratase activity2.18E-02
87GO:0003725: double-stranded RNA binding2.18E-02
88GO:0005351: sugar:proton symporter activity2.24E-02
89GO:0008131: primary amine oxidase activity2.37E-02
90GO:0008083: growth factor activity2.37E-02
91GO:0008017: microtubule binding2.45E-02
92GO:0004672: protein kinase activity2.51E-02
93GO:0004970: ionotropic glutamate receptor activity2.58E-02
94GO:0005217: intracellular ligand-gated ion channel activity2.58E-02
95GO:0003887: DNA-directed DNA polymerase activity2.78E-02
96GO:0005506: iron ion binding2.83E-02
97GO:0051537: 2 iron, 2 sulfur cluster binding2.86E-02
98GO:0003714: transcription corepressor activity3.00E-02
99GO:0005528: FK506 binding3.00E-02
100GO:0005345: purine nucleobase transmembrane transporter activity3.22E-02
101GO:0015079: potassium ion transmembrane transporter activity3.22E-02
102GO:0004176: ATP-dependent peptidase activity3.44E-02
103GO:0033612: receptor serine/threonine kinase binding3.44E-02
104GO:0019706: protein-cysteine S-palmitoyltransferase activity3.44E-02
105GO:0008408: 3'-5' exonuclease activity3.44E-02
106GO:0016760: cellulose synthase (UDP-forming) activity3.90E-02
107GO:0003777: microtubule motor activity3.94E-02
108GO:0019825: oxygen binding4.05E-02
109GO:0008514: organic anion transmembrane transporter activity4.14E-02
110GO:0016874: ligase activity4.75E-02
111GO:0008536: Ran GTPase binding4.89E-02
112GO:0001085: RNA polymerase II transcription factor binding4.89E-02
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Gene type



Gene DE type