Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G03000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019370: leukotriene biosynthetic process0.00E+00
2GO:0080127: fruit septum development0.00E+00
3GO:0060966: regulation of gene silencing by RNA0.00E+00
4GO:0009946: proximal/distal axis specification0.00E+00
5GO:0070829: heterochromatin maintenance0.00E+00
6GO:0071360: cellular response to exogenous dsRNA0.00E+00
7GO:1900370: positive regulation of RNA interference0.00E+00
8GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
9GO:0045014: negative regulation of transcription by glucose0.00E+00
10GO:0035563: positive regulation of chromatin binding0.00E+00
11GO:0048263: determination of dorsal identity0.00E+00
12GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
13GO:0009658: chloroplast organization2.32E-06
14GO:0006401: RNA catabolic process5.19E-05
15GO:0006390: transcription from mitochondrial promoter1.12E-04
16GO:0006430: lysyl-tRNA aminoacylation1.12E-04
17GO:1900368: regulation of RNA interference1.12E-04
18GO:0034214: protein hexamerization1.12E-04
19GO:0045037: protein import into chloroplast stroma2.06E-04
20GO:1900111: positive regulation of histone H3-K9 dimethylation2.61E-04
21GO:1901529: positive regulation of anion channel activity2.61E-04
22GO:0009965: leaf morphogenesis3.25E-04
23GO:0006364: rRNA processing4.12E-04
24GO:0032776: DNA methylation on cytosine4.32E-04
25GO:0006471: protein ADP-ribosylation4.32E-04
26GO:0010338: leaf formation4.32E-04
27GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement4.32E-04
28GO:0060968: regulation of gene silencing4.32E-04
29GO:0060964: regulation of gene silencing by miRNA6.19E-04
30GO:0010371: regulation of gibberellin biosynthetic process6.19E-04
31GO:0009102: biotin biosynthetic process6.19E-04
32GO:0043481: anthocyanin accumulation in tissues in response to UV light6.19E-04
33GO:0009855: determination of bilateral symmetry6.19E-04
34GO:0006273: lagging strand elongation8.23E-04
35GO:0045088: regulation of innate immune response8.23E-04
36GO:0051103: DNA ligation involved in DNA repair8.23E-04
37GO:0048497: maintenance of floral organ identity1.04E-03
38GO:0016123: xanthophyll biosynthetic process1.04E-03
39GO:0016120: carotene biosynthetic process1.04E-03
40GO:0042793: transcription from plastid promoter1.27E-03
41GO:0003006: developmental process involved in reproduction1.27E-03
42GO:0010019: chloroplast-nucleus signaling pathway1.52E-03
43GO:0048444: floral organ morphogenesis1.52E-03
44GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.52E-03
45GO:0080060: integument development1.52E-03
46GO:0010014: meristem initiation1.52E-03
47GO:0009793: embryo development ending in seed dormancy1.67E-03
48GO:1900056: negative regulation of leaf senescence1.78E-03
49GO:0010098: suspensor development1.78E-03
50GO:0005978: glycogen biosynthetic process2.06E-03
51GO:0009642: response to light intensity2.06E-03
52GO:0042255: ribosome assembly2.06E-03
53GO:0006353: DNA-templated transcription, termination2.06E-03
54GO:0006402: mRNA catabolic process2.06E-03
55GO:0010100: negative regulation of photomorphogenesis2.35E-03
56GO:0007389: pattern specification process2.35E-03
57GO:0009827: plant-type cell wall modification2.35E-03
58GO:0048589: developmental growth2.66E-03
59GO:0098656: anion transmembrane transport2.66E-03
60GO:0048507: meristem development2.66E-03
61GO:0008356: asymmetric cell division2.97E-03
62GO:0031425: chloroplast RNA processing2.97E-03
63GO:0030422: production of siRNA involved in RNA interference3.30E-03
64GO:0048829: root cap development3.30E-03
65GO:0009641: shade avoidance3.30E-03
66GO:0006949: syncytium formation3.30E-03
67GO:0006259: DNA metabolic process3.30E-03
68GO:0019538: protein metabolic process3.30E-03
69GO:0048765: root hair cell differentiation3.65E-03
70GO:0006265: DNA topological change3.65E-03
71GO:0010582: floral meristem determinacy4.00E-03
72GO:0010152: pollen maturation4.00E-03
73GO:0010075: regulation of meristem growth4.36E-03
74GO:0006281: DNA repair4.71E-03
75GO:0009887: animal organ morphogenesis4.74E-03
76GO:0009934: regulation of meristem structural organization4.74E-03
77GO:0048467: gynoecium development4.74E-03
78GO:0006541: glutamine metabolic process4.74E-03
79GO:0010020: chloroplast fission4.74E-03
80GO:0080188: RNA-directed DNA methylation5.13E-03
81GO:0000027: ribosomal large subunit assembly5.93E-03
82GO:0009944: polarity specification of adaxial/abaxial axis5.93E-03
83GO:0010073: meristem maintenance6.35E-03
84GO:0051302: regulation of cell division6.35E-03
85GO:0006418: tRNA aminoacylation for protein translation6.35E-03
86GO:0003333: amino acid transmembrane transport6.78E-03
87GO:0010431: seed maturation6.78E-03
88GO:0006306: DNA methylation6.78E-03
89GO:0030245: cellulose catabolic process7.22E-03
90GO:0009831: plant-type cell wall modification involved in multidimensional cell growth7.67E-03
91GO:0048443: stamen development8.13E-03
92GO:0010091: trichome branching8.13E-03
93GO:0040008: regulation of growth8.40E-03
94GO:0051028: mRNA transport8.60E-03
95GO:0008033: tRNA processing9.08E-03
96GO:0010501: RNA secondary structure unwinding9.08E-03
97GO:0010087: phloem or xylem histogenesis9.08E-03
98GO:0042335: cuticle development9.08E-03
99GO:0007059: chromosome segregation1.01E-02
100GO:0019252: starch biosynthetic process1.06E-02
101GO:0009791: post-embryonic development1.06E-02
102GO:0032502: developmental process1.16E-02
103GO:0045893: positive regulation of transcription, DNA-templated1.16E-02
104GO:0009828: plant-type cell wall loosening1.27E-02
105GO:0006464: cellular protein modification process1.27E-02
106GO:0009615: response to virus1.44E-02
107GO:0007049: cell cycle1.53E-02
108GO:0009627: systemic acquired resistance1.56E-02
109GO:0015995: chlorophyll biosynthetic process1.62E-02
110GO:0016311: dephosphorylation1.68E-02
111GO:0048481: plant ovule development1.74E-02
112GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.75E-02
113GO:0007165: signal transduction1.78E-02
114GO:0006865: amino acid transport1.99E-02
115GO:0045892: negative regulation of transcription, DNA-templated2.06E-02
116GO:0006351: transcription, DNA-templated2.31E-02
117GO:0008283: cell proliferation2.46E-02
118GO:0048364: root development2.61E-02
119GO:0009664: plant-type cell wall organization2.89E-02
120GO:0009585: red, far-red light phototransduction3.04E-02
121GO:0048367: shoot system development3.51E-02
122GO:0009624: response to nematode3.91E-02
123GO:0051726: regulation of cell cycle4.08E-02
124GO:0009742: brassinosteroid mediated signaling pathway4.08E-02
125GO:0009058: biosynthetic process4.76E-02
126GO:0051301: cell division4.82E-02
RankGO TermAdjusted P value
1GO:0004835: tubulin-tyrosine ligase activity0.00E+00
2GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity0.00E+00
3GO:0003922: GMP synthase (glutamine-hydrolyzing) activity0.00E+00
4GO:0004463: leukotriene-A4 hydrolase activity0.00E+00
5GO:0008859: exoribonuclease II activity0.00E+00
6GO:0004141: dethiobiotin synthase activity0.00E+00
7GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
8GO:0042803: protein homodimerization activity9.44E-05
9GO:0034335: DNA supercoiling activity1.12E-04
10GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor1.12E-04
11GO:0004654: polyribonucleotide nucleotidyltransferase activity1.12E-04
12GO:0004824: lysine-tRNA ligase activity1.12E-04
13GO:0000175: 3'-5'-exoribonuclease activity2.36E-04
14GO:0003844: 1,4-alpha-glucan branching enzyme activity2.61E-04
15GO:0043169: cation binding4.32E-04
16GO:0008097: 5S rRNA binding6.19E-04
17GO:0003916: DNA topoisomerase activity6.19E-04
18GO:0003677: DNA binding6.95E-04
19GO:0003723: RNA binding7.30E-04
20GO:0010011: auxin binding8.23E-04
21GO:0010328: auxin influx transmembrane transporter activity8.23E-04
22GO:0003910: DNA ligase (ATP) activity1.04E-03
23GO:0016462: pyrophosphatase activity1.27E-03
24GO:0004556: alpha-amylase activity1.27E-03
25GO:0008289: lipid binding1.40E-03
26GO:0003950: NAD+ ADP-ribosyltransferase activity1.52E-03
27GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity2.35E-03
28GO:0005315: inorganic phosphate transmembrane transporter activity4.36E-03
29GO:0009982: pseudouridine synthase activity4.36E-03
30GO:0016874: ligase activity4.80E-03
31GO:0003779: actin binding4.95E-03
32GO:0003712: transcription cofactor activity5.13E-03
33GO:0003676: nucleic acid binding5.21E-03
34GO:0008026: ATP-dependent helicase activity5.40E-03
35GO:0005515: protein binding5.54E-03
36GO:0004540: ribonuclease activity6.78E-03
37GO:0008810: cellulase activity7.67E-03
38GO:0003727: single-stranded RNA binding8.13E-03
39GO:0008514: organic anion transmembrane transporter activity8.13E-03
40GO:0004812: aminoacyl-tRNA ligase activity8.60E-03
41GO:0005524: ATP binding8.62E-03
42GO:0019901: protein kinase binding1.06E-02
43GO:0048038: quinone binding1.11E-02
44GO:0016791: phosphatase activity1.27E-02
45GO:0004004: ATP-dependent RNA helicase activity1.62E-02
46GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.86E-02
47GO:0003697: single-stranded DNA binding2.06E-02
48GO:0003993: acid phosphatase activity2.12E-02
49GO:0004722: protein serine/threonine phosphatase activity2.23E-02
50GO:0043565: sequence-specific DNA binding2.37E-02
51GO:0043621: protein self-association2.60E-02
52GO:0015293: symporter activity2.67E-02
53GO:0051287: NAD binding2.82E-02
54GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.04E-02
55GO:0003690: double-stranded DNA binding3.12E-02
56GO:0016298: lipase activity3.12E-02
57GO:0015171: amino acid transmembrane transporter activity3.27E-02
58GO:0016887: ATPase activity3.87E-02
59GO:0004386: helicase activity4.16E-02
60GO:0003700: transcription factor activity, sequence-specific DNA binding4.37E-02
61GO:0019843: rRNA binding4.59E-02
62GO:0030170: pyridoxal phosphate binding4.94E-02
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Gene type



Gene DE type