Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G01540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015739: sialic acid transport0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0010412: mannan metabolic process0.00E+00
4GO:0071311: cellular response to acetate0.00E+00
5GO:0015843: methylammonium transport0.00E+00
6GO:0071260: cellular response to mechanical stimulus0.00E+00
7GO:0061157: mRNA destabilization0.00E+00
8GO:0090706: specification of plant organ position0.00E+00
9GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
10GO:0031116: positive regulation of microtubule polymerization0.00E+00
11GO:0010068: protoderm histogenesis0.00E+00
12GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
13GO:0007638: mechanosensory behavior0.00E+00
14GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
15GO:0046620: regulation of organ growth1.64E-05
16GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway9.51E-05
17GO:0006468: protein phosphorylation1.23E-04
18GO:1902183: regulation of shoot apical meristem development1.50E-04
19GO:0043087: regulation of GTPase activity4.02E-04
20GO:2000021: regulation of ion homeostasis4.02E-04
21GO:0006264: mitochondrial DNA replication4.02E-04
22GO:0043609: regulation of carbon utilization4.02E-04
23GO:0033259: plastid DNA replication4.02E-04
24GO:0000066: mitochondrial ornithine transport4.02E-04
25GO:0006177: GMP biosynthetic process4.02E-04
26GO:0010450: inflorescence meristem growth4.02E-04
27GO:0051171: regulation of nitrogen compound metabolic process4.02E-04
28GO:0071028: nuclear mRNA surveillance4.02E-04
29GO:0043266: regulation of potassium ion transport4.02E-04
30GO:0046520: sphingoid biosynthetic process4.02E-04
31GO:0010480: microsporocyte differentiation4.02E-04
32GO:0006659: phosphatidylserine biosynthetic process4.02E-04
33GO:0006002: fructose 6-phosphate metabolic process5.69E-04
34GO:0000373: Group II intron splicing6.82E-04
35GO:2000024: regulation of leaf development6.82E-04
36GO:0007166: cell surface receptor signaling pathway7.62E-04
37GO:0009638: phototropism8.05E-04
38GO:0010380: regulation of chlorophyll biosynthetic process8.05E-04
39GO:0031648: protein destabilization8.71E-04
40GO:0042550: photosystem I stabilization8.71E-04
41GO:0031125: rRNA 3'-end processing8.71E-04
42GO:0071051: polyadenylation-dependent snoRNA 3'-end processing8.71E-04
43GO:0034475: U4 snRNA 3'-end processing8.71E-04
44GO:0042853: L-alanine catabolic process8.71E-04
45GO:0031537: regulation of anthocyanin metabolic process8.71E-04
46GO:0007154: cell communication8.71E-04
47GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation8.71E-04
48GO:0071497: cellular response to freezing8.71E-04
49GO:0080175: phragmoplast microtubule organization8.71E-04
50GO:0048367: shoot system development9.75E-04
51GO:0006816: calcium ion transport1.08E-03
52GO:0009658: chloroplast organization1.29E-03
53GO:0001578: microtubule bundle formation1.41E-03
54GO:0072661: protein targeting to plasma membrane1.41E-03
55GO:0045165: cell fate commitment1.41E-03
56GO:0016075: rRNA catabolic process1.41E-03
57GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.41E-03
58GO:0031022: nuclear migration along microfilament1.41E-03
59GO:0051127: positive regulation of actin nucleation1.41E-03
60GO:0019419: sulfate reduction1.41E-03
61GO:0071230: cellular response to amino acid stimulus1.41E-03
62GO:0006000: fructose metabolic process1.41E-03
63GO:0010020: chloroplast fission1.57E-03
64GO:0000160: phosphorelay signal transduction system1.60E-03
65GO:0009733: response to auxin1.83E-03
66GO:2001141: regulation of RNA biosynthetic process2.04E-03
67GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.04E-03
68GO:0007231: osmosensory signaling pathway2.04E-03
69GO:0051639: actin filament network formation2.04E-03
70GO:0009226: nucleotide-sugar biosynthetic process2.04E-03
71GO:0048645: animal organ formation2.04E-03
72GO:0044211: CTP salvage2.04E-03
73GO:0010255: glucose mediated signaling pathway2.04E-03
74GO:0015696: ammonium transport2.04E-03
75GO:0046739: transport of virus in multicellular host2.04E-03
76GO:2000904: regulation of starch metabolic process2.04E-03
77GO:0006164: purine nucleotide biosynthetic process2.04E-03
78GO:0043572: plastid fission2.04E-03
79GO:0010187: negative regulation of seed germination2.18E-03
80GO:0019344: cysteine biosynthetic process2.18E-03
81GO:0009944: polarity specification of adaxial/abaxial axis2.18E-03
82GO:0009165: nucleotide biosynthetic process2.74E-03
83GO:1901141: regulation of lignin biosynthetic process2.74E-03
84GO:0051764: actin crosslink formation2.74E-03
85GO:0051322: anaphase2.74E-03
86GO:0033500: carbohydrate homeostasis2.74E-03
87GO:0046355: mannan catabolic process2.74E-03
88GO:0072488: ammonium transmembrane transport2.74E-03
89GO:0006021: inositol biosynthetic process2.74E-03
90GO:0007020: microtubule nucleation2.74E-03
91GO:0044205: 'de novo' UMP biosynthetic process2.74E-03
92GO:0044206: UMP salvage2.74E-03
93GO:0009926: auxin polar transport2.80E-03
94GO:2000022: regulation of jasmonic acid mediated signaling pathway2.90E-03
95GO:0010082: regulation of root meristem growth3.16E-03
96GO:0071368: cellular response to cytokinin stimulus3.51E-03
97GO:0051225: spindle assembly3.51E-03
98GO:0010158: abaxial cell fate specification3.51E-03
99GO:0048578: positive regulation of long-day photoperiodism, flowering3.51E-03
100GO:0046785: microtubule polymerization3.51E-03
101GO:0009904: chloroplast accumulation movement3.51E-03
102GO:0006544: glycine metabolic process3.51E-03
103GO:0080022: primary root development4.03E-03
104GO:0009736: cytokinin-activated signaling pathway4.10E-03
105GO:0006563: L-serine metabolic process4.35E-03
106GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.35E-03
107GO:0009959: negative gravitropism4.35E-03
108GO:0006139: nucleobase-containing compound metabolic process4.35E-03
109GO:0045962: positive regulation of development, heterochronic4.35E-03
110GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.35E-03
111GO:0009117: nucleotide metabolic process4.35E-03
112GO:0006206: pyrimidine nucleobase metabolic process4.35E-03
113GO:0009635: response to herbicide4.35E-03
114GO:0080113: regulation of seed growth5.24E-03
115GO:0080086: stamen filament development5.24E-03
116GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity5.24E-03
117GO:0080036: regulation of cytokinin-activated signaling pathway5.24E-03
118GO:0042372: phylloquinone biosynthetic process5.24E-03
119GO:0009082: branched-chain amino acid biosynthetic process5.24E-03
120GO:0009099: valine biosynthetic process5.24E-03
121GO:0009903: chloroplast avoidance movement5.24E-03
122GO:0030488: tRNA methylation5.24E-03
123GO:0009740: gibberellic acid mediated signaling pathway5.96E-03
124GO:0010161: red light signaling pathway6.19E-03
125GO:0009610: response to symbiotic fungus6.19E-03
126GO:0048528: post-embryonic root development6.19E-03
127GO:0048437: floral organ development6.19E-03
128GO:0006400: tRNA modification6.19E-03
129GO:0009734: auxin-activated signaling pathway6.84E-03
130GO:0009690: cytokinin metabolic process7.20E-03
131GO:0019375: galactolipid biosynthetic process7.20E-03
132GO:0010078: maintenance of root meristem identity7.20E-03
133GO:0009704: de-etiolation7.20E-03
134GO:0043562: cellular response to nitrogen levels8.26E-03
135GO:0010093: specification of floral organ identity8.26E-03
136GO:0010099: regulation of photomorphogenesis8.26E-03
137GO:0071482: cellular response to light stimulus8.26E-03
138GO:0009097: isoleucine biosynthetic process8.26E-03
139GO:0010100: negative regulation of photomorphogenesis8.26E-03
140GO:0010497: plasmodesmata-mediated intercellular transport8.26E-03
141GO:0006526: arginine biosynthetic process8.26E-03
142GO:0009735: response to cytokinin8.76E-03
143GO:0006189: 'de novo' IMP biosynthetic process9.38E-03
144GO:0015780: nucleotide-sugar transport9.38E-03
145GO:0051865: protein autoubiquitination9.38E-03
146GO:0009051: pentose-phosphate shunt, oxidative branch9.38E-03
147GO:0006783: heme biosynthetic process9.38E-03
148GO:0030244: cellulose biosynthetic process1.02E-02
149GO:0035999: tetrahydrofolate interconversion1.06E-02
150GO:0031425: chloroplast RNA processing1.06E-02
151GO:0006499: N-terminal protein myristoylation1.12E-02
152GO:0045036: protein targeting to chloroplast1.18E-02
153GO:0009299: mRNA transcription1.18E-02
154GO:0006535: cysteine biosynthetic process from serine1.18E-02
155GO:0000103: sulfate assimilation1.18E-02
156GO:0040008: regulation of growth1.22E-02
157GO:0048229: gametophyte development1.30E-02
158GO:0009684: indoleacetic acid biosynthetic process1.30E-02
159GO:0010015: root morphogenesis1.30E-02
160GO:0009773: photosynthetic electron transport in photosystem I1.30E-02
161GO:1903507: negative regulation of nucleic acid-templated transcription1.30E-02
162GO:0006352: DNA-templated transcription, initiation1.30E-02
163GO:0010152: pollen maturation1.44E-02
164GO:0045037: protein import into chloroplast stroma1.44E-02
165GO:0006839: mitochondrial transport1.47E-02
166GO:0006631: fatty acid metabolic process1.54E-02
167GO:0030036: actin cytoskeleton organization1.57E-02
168GO:0010075: regulation of meristem growth1.57E-02
169GO:0009725: response to hormone1.57E-02
170GO:0010588: cotyledon vascular tissue pattern formation1.57E-02
171GO:0010628: positive regulation of gene expression1.57E-02
172GO:0009785: blue light signaling pathway1.57E-02
173GO:0006006: glucose metabolic process1.57E-02
174GO:0009934: regulation of meristem structural organization1.71E-02
175GO:0048467: gynoecium development1.71E-02
176GO:0009933: meristem structural organization1.71E-02
177GO:0008643: carbohydrate transport1.81E-02
178GO:0090351: seedling development1.86E-02
179GO:0010030: positive regulation of seed germination1.86E-02
180GO:0070588: calcium ion transmembrane transport1.86E-02
181GO:0006855: drug transmembrane transport1.95E-02
182GO:0009833: plant-type primary cell wall biogenesis2.01E-02
183GO:0005992: trehalose biosynthetic process2.16E-02
184GO:0051017: actin filament bundle assembly2.16E-02
185GO:0007010: cytoskeleton organization2.16E-02
186GO:0006874: cellular calcium ion homeostasis2.32E-02
187GO:0043622: cortical microtubule organization2.32E-02
188GO:0031408: oxylipin biosynthetic process2.48E-02
189GO:0006730: one-carbon metabolic process2.64E-02
190GO:0080092: regulation of pollen tube growth2.64E-02
191GO:0035428: hexose transmembrane transport2.64E-02
192GO:0016310: phosphorylation2.80E-02
193GO:0009686: gibberellin biosynthetic process2.81E-02
194GO:0010214: seed coat development2.99E-02
195GO:0019722: calcium-mediated signaling2.99E-02
196GO:0070417: cellular response to cold3.16E-02
197GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.16E-02
198GO:0009416: response to light stimulus3.24E-02
199GO:0006396: RNA processing3.30E-02
200GO:0034220: ion transmembrane transport3.34E-02
201GO:0010087: phloem or xylem histogenesis3.34E-02
202GO:0010118: stomatal movement3.34E-02
203GO:0048653: anther development3.34E-02
204GO:0042631: cellular response to water deprivation3.34E-02
205GO:0042335: cuticle development3.34E-02
206GO:0010182: sugar mediated signaling pathway3.53E-02
207GO:0046323: glucose import3.53E-02
208GO:0009958: positive gravitropism3.53E-02
209GO:0010154: fruit development3.53E-02
210GO:0007018: microtubule-based movement3.71E-02
211GO:0008654: phospholipid biosynthetic process3.90E-02
212GO:0009851: auxin biosynthetic process3.90E-02
213GO:0048825: cotyledon development3.90E-02
214GO:0009791: post-embryonic development3.90E-02
215GO:0030154: cell differentiation3.91E-02
216GO:0000302: response to reactive oxygen species4.09E-02
217GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.09E-02
218GO:0009058: biosynthetic process4.23E-02
219GO:0010583: response to cyclopentenone4.29E-02
220GO:0016032: viral process4.29E-02
221GO:1901657: glycosyl compound metabolic process4.49E-02
RankGO TermAdjusted P value
1GO:0004056: argininosuccinate lyase activity0.00E+00
2GO:1990534: thermospermine oxidase activity0.00E+00
3GO:0019136: deoxynucleoside kinase activity0.00E+00
4GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
7GO:0015136: sialic acid transmembrane transporter activity0.00E+00
8GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0015276: ligand-gated ion channel activity0.00E+00
11GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
12GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.83E-05
13GO:0000170: sphingosine hydroxylase activity4.02E-04
14GO:0050139: nicotinate-N-glucosyltransferase activity4.02E-04
15GO:0046480: galactolipid galactosyltransferase activity4.02E-04
16GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity4.02E-04
17GO:0047958: glycine:2-oxoglutarate aminotransferase activity4.02E-04
18GO:0003984: acetolactate synthase activity4.02E-04
19GO:0008066: glutamate receptor activity4.02E-04
20GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.02E-04
21GO:0005290: L-histidine transmembrane transporter activity4.02E-04
22GO:0046481: digalactosyldiacylglycerol synthase activity4.02E-04
23GO:0010313: phytochrome binding4.02E-04
24GO:0000156: phosphorelay response regulator activity7.97E-04
25GO:0050017: L-3-cyanoalanine synthase activity8.71E-04
26GO:0043425: bHLH transcription factor binding8.71E-04
27GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity8.71E-04
28GO:0033741: adenylyl-sulfate reductase (glutathione) activity8.71E-04
29GO:0003938: IMP dehydrogenase activity8.71E-04
30GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.71E-04
31GO:0009973: adenylyl-sulfate reductase activity8.71E-04
32GO:0080097: L-tryptophan:pyruvate aminotransferase activity8.71E-04
33GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity8.71E-04
34GO:0042284: sphingolipid delta-4 desaturase activity8.71E-04
35GO:0000064: L-ornithine transmembrane transporter activity8.71E-04
36GO:0004512: inositol-3-phosphate synthase activity8.71E-04
37GO:0004674: protein serine/threonine kinase activity8.94E-04
38GO:0004672: protein kinase activity1.21E-03
39GO:0005262: calcium channel activity1.40E-03
40GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.41E-03
41GO:0046524: sucrose-phosphate synthase activity1.41E-03
42GO:0070330: aromatase activity1.41E-03
43GO:0005524: ATP binding1.56E-03
44GO:0015189: L-lysine transmembrane transporter activity2.04E-03
45GO:0035529: NADH pyrophosphatase activity2.04E-03
46GO:0000254: C-4 methylsterol oxidase activity2.04E-03
47GO:0035250: UDP-galactosyltransferase activity2.04E-03
48GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity2.04E-03
49GO:0015181: arginine transmembrane transporter activity2.04E-03
50GO:0001053: plastid sigma factor activity2.74E-03
51GO:0004845: uracil phosphoribosyltransferase activity2.74E-03
52GO:0004737: pyruvate decarboxylase activity2.74E-03
53GO:0004345: glucose-6-phosphate dehydrogenase activity2.74E-03
54GO:0008409: 5'-3' exonuclease activity2.74E-03
55GO:0016985: mannan endo-1,4-beta-mannosidase activity2.74E-03
56GO:0008453: alanine-glyoxylate transaminase activity2.74E-03
57GO:0016987: sigma factor activity2.74E-03
58GO:0016301: kinase activity2.99E-03
59GO:0008017: microtubule binding3.04E-03
60GO:0043621: protein self-association3.10E-03
61GO:0004372: glycine hydroxymethyltransferase activity3.51E-03
62GO:0016846: carbon-sulfur lyase activity3.51E-03
63GO:0018685: alkane 1-monooxygenase activity3.51E-03
64GO:0016773: phosphotransferase activity, alcohol group as acceptor3.51E-03
65GO:0008519: ammonium transmembrane transporter activity4.35E-03
66GO:0030976: thiamine pyrophosphate binding4.35E-03
67GO:2001070: starch binding4.35E-03
68GO:0004709: MAP kinase kinase kinase activity4.35E-03
69GO:0016208: AMP binding4.35E-03
70GO:0016462: pyrophosphatase activity4.35E-03
71GO:0004124: cysteine synthase activity5.24E-03
72GO:0004849: uridine kinase activity5.24E-03
73GO:0016832: aldehyde-lyase activity5.24E-03
74GO:0051015: actin filament binding6.11E-03
75GO:0005338: nucleotide-sugar transmembrane transporter activity6.19E-03
76GO:0003872: 6-phosphofructokinase activity6.19E-03
77GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity8.26E-03
78GO:0008173: RNA methyltransferase activity8.26E-03
79GO:0030170: pyridoxal phosphate binding9.80E-03
80GO:0015238: drug transmembrane transporter activity1.07E-02
81GO:0004871: signal transducer activity1.08E-02
82GO:0004713: protein tyrosine kinase activity1.18E-02
83GO:0004805: trehalose-phosphatase activity1.18E-02
84GO:0005515: protein binding1.19E-02
85GO:0005089: Rho guanyl-nucleotide exchange factor activity1.30E-02
86GO:0008794: arsenate reductase (glutaredoxin) activity1.30E-02
87GO:0004089: carbonate dehydratase activity1.57E-02
88GO:0000175: 3'-5'-exoribonuclease activity1.57E-02
89GO:0008131: primary amine oxidase activity1.71E-02
90GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.71E-02
91GO:0005217: intracellular ligand-gated ion channel activity1.86E-02
92GO:0004970: ionotropic glutamate receptor activity1.86E-02
93GO:0003887: DNA-directed DNA polymerase activity2.01E-02
94GO:0005528: FK506 binding2.16E-02
95GO:0003714: transcription corepressor activity2.16E-02
96GO:0005345: purine nucleobase transmembrane transporter activity2.32E-02
97GO:0019706: protein-cysteine S-palmitoyltransferase activity2.48E-02
98GO:0008408: 3'-5' exonuclease activity2.48E-02
99GO:0033612: receptor serine/threonine kinase binding2.48E-02
100GO:0003777: microtubule motor activity2.50E-02
101GO:0016760: cellulose synthase (UDP-forming) activity2.81E-02
102GO:0030570: pectate lyase activity2.81E-02
103GO:0003727: single-stranded RNA binding2.99E-02
104GO:0008514: organic anion transmembrane transporter activity2.99E-02
105GO:0016874: ligase activity3.02E-02
106GO:0005506: iron ion binding3.31E-02
107GO:0008536: Ran GTPase binding3.53E-02
108GO:0001085: RNA polymerase II transcription factor binding3.53E-02
109GO:0005355: glucose transmembrane transporter activity3.71E-02
110GO:0010181: FMN binding3.71E-02
111GO:0016762: xyloglucan:xyloglucosyl transferase activity4.09E-02
112GO:0016829: lyase activity4.33E-02
113GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.49E-02
114GO:0016759: cellulose synthase activity4.69E-02
115GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.83E-02
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Gene type



Gene DE type