co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G66880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
4	GO:0098586: cellular response to virus	0.00E+00
5	GO:0010203: response to very low fluence red light stimulus	0.00E+00
6	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:0045038: protein import into chloroplast thylakoid membrane	1.69E-05
9	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	1.08E-04
10	GO:0000012: single strand break repair	1.08E-04
11	GO:0043266: regulation of potassium ion transport	1.08E-04
12	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.08E-04
13	GO:2000021: regulation of ion homeostasis	1.08E-04
14	GO:0000066: mitochondrial ornithine transport	1.08E-04
15	GO:1902458: positive regulation of stomatal opening	1.08E-04
16	GO:0015969: guanosine tetraphosphate metabolic process	1.08E-04
17	GO:1900871: chloroplast mRNA modification	2.52E-04
18	GO:0000256: allantoin catabolic process	2.52E-04
19	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.52E-04
20	GO:0046741: transport of virus in host, tissue to tissue	2.52E-04
21	GO:0010136: ureide catabolic process	4.19E-04
22	GO:0017006: protein-tetrapyrrole linkage	4.19E-04
23	GO:0010623: programmed cell death involved in cell development	4.19E-04
24	GO:0005977: glycogen metabolic process	4.19E-04
25	GO:0000913: preprophase band assembly	4.19E-04
26	GO:0031022: nuclear migration along microfilament	4.19E-04
27	GO:0009226: nucleotide-sugar biosynthetic process	6.01E-04
28	GO:0043572: plastid fission	6.01E-04
29	GO:2001141: regulation of RNA biosynthetic process	6.01E-04
30	GO:0090308: regulation of methylation-dependent chromatin silencing	6.01E-04
31	GO:0046836: glycolipid transport	6.01E-04
32	GO:0009584: detection of visible light	6.01E-04
33	GO:0006145: purine nucleobase catabolic process	6.01E-04
34	GO:0045489: pectin biosynthetic process	7.01E-04
35	GO:0007018: microtubule-based movement	7.52E-04
36	GO:0010021: amylopectin biosynthetic process	7.98E-04
37	GO:0048442: sepal development	7.98E-04
38	GO:0051322: anaphase	7.98E-04
39	GO:0006661: phosphatidylinositol biosynthetic process	7.98E-04
40	GO:0010508: positive regulation of autophagy	7.98E-04
41	GO:0008654: phospholipid biosynthetic process	8.05E-04
42	GO:0080110: sporopollenin biosynthetic process	1.01E-03
43	GO:0009904: chloroplast accumulation movement	1.01E-03
44	GO:0016123: xanthophyll biosynthetic process	1.01E-03
45	GO:0000910: cytokinesis	1.16E-03
46	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.23E-03
47	GO:0010076: maintenance of floral meristem identity	1.47E-03
48	GO:0017148: negative regulation of translation	1.47E-03
49	GO:0009903: chloroplast avoidance movement	1.47E-03
50	GO:0010189: vitamin E biosynthetic process	1.47E-03
51	GO:0010161: red light signaling pathway	1.73E-03
52	GO:2000070: regulation of response to water deprivation	2.00E-03
53	GO:0009658: chloroplast organization	2.06E-03
54	GO:0071482: cellular response to light stimulus	2.28E-03
55	GO:0009827: plant-type cell wall modification	2.28E-03
56	GO:0010206: photosystem II repair	2.57E-03
57	GO:0000373: Group II intron splicing	2.57E-03
58	GO:0046685: response to arsenic-containing substance	2.57E-03
59	GO:0009638: phototropism	2.88E-03
60	GO:0048441: petal development	3.20E-03
61	GO:0006352: DNA-templated transcription, initiation	3.53E-03
62	GO:0010216: maintenance of DNA methylation	3.53E-03
63	GO:0009767: photosynthetic electron transport chain	4.23E-03
64	GO:0010207: photosystem II assembly	4.59E-03
65	GO:0006302: double-strand break repair	4.59E-03
66	GO:0048440: carpel development	4.59E-03
67	GO:0006541: glutamine metabolic process	4.59E-03
68	GO:0010020: chloroplast fission	4.59E-03
69	GO:0051302: regulation of cell division	6.15E-03
70	GO:0008299: isoprenoid biosynthetic process	6.15E-03
71	GO:0016310: phosphorylation	6.16E-03
72	GO:0031348: negative regulation of defense response	6.99E-03
73	GO:0009306: protein secretion	7.87E-03
74	GO:0010089: xylem development	7.87E-03
75	GO:0010584: pollen exine formation	7.87E-03
76	GO:0048443: stamen development	7.87E-03
77	GO:0019722: calcium-mediated signaling	7.87E-03
78	GO:0016117: carotenoid biosynthetic process	8.32E-03
79	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.32E-03
80	GO:0046323: glucose import	9.26E-03
81	GO:0010268: brassinosteroid homeostasis	9.26E-03
82	GO:0007166: cell surface receptor signaling pathway	9.60E-03
83	GO:0019252: starch biosynthetic process	1.02E-02
84	GO:0000302: response to reactive oxygen species	1.07E-02
85	GO:0016132: brassinosteroid biosynthetic process	1.07E-02
86	GO:0016032: viral process	1.12E-02
87	GO:0009630: gravitropism	1.12E-02
88	GO:0007264: small GTPase mediated signal transduction	1.12E-02
89	GO:0016125: sterol metabolic process	1.23E-02
90	GO:0019760: glucosinolate metabolic process	1.23E-02
91	GO:0007267: cell-cell signaling	1.28E-02
92	GO:0016126: sterol biosynthetic process	1.39E-02
93	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.45E-02
94	GO:0016311: dephosphorylation	1.62E-02
95	GO:0030244: cellulose biosynthetic process	1.68E-02
96	GO:0018298: protein-chromophore linkage	1.68E-02
97	GO:0010218: response to far red light	1.80E-02
98	GO:0009834: plant-type secondary cell wall biogenesis	1.80E-02
99	GO:0045087: innate immune response	1.99E-02
100	GO:0009637: response to blue light	1.99E-02
101	GO:0006839: mitochondrial transport	2.18E-02
102	GO:0071555: cell wall organization	2.25E-02
103	GO:0010114: response to red light	2.38E-02
104	GO:0009640: photomorphogenesis	2.38E-02
105	GO:0042546: cell wall biogenesis	2.45E-02
106	GO:0009644: response to high light intensity	2.52E-02
107	GO:0000165: MAPK cascade	2.73E-02
108	GO:0042538: hyperosmotic salinity response	2.80E-02
109	GO:0006364: rRNA processing	2.94E-02
110	GO:0009585: red, far-red light phototransduction	2.94E-02
111	GO:0016569: covalent chromatin modification	3.63E-02
112	GO:0005975: carbohydrate metabolic process	3.77E-02
113	GO:0009738: abscisic acid-activated signaling pathway	4.09E-02
114	GO:0055114: oxidation-reduction process	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
2	GO:0050613: delta14-sterol reductase activity	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
7	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
8	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
9	GO:0043022: ribosome binding	6.41E-05
10	GO:0008242: omega peptidase activity	1.08E-04
11	GO:0031516: far-red light photoreceptor activity	1.08E-04
12	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.08E-04
13	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.08E-04
14	GO:0005290: L-histidine transmembrane transporter activity	1.08E-04
15	GO:0019156: isoamylase activity	2.52E-04
16	GO:0034722: gamma-glutamyl-peptidase activity	2.52E-04
17	GO:0008728: GTP diphosphokinase activity	2.52E-04
18	GO:0010291: carotene beta-ring hydroxylase activity	2.52E-04
19	GO:0004103: choline kinase activity	2.52E-04
20	GO:0009883: red or far-red light photoreceptor activity	2.52E-04
21	GO:0080041: ADP-ribose pyrophosphohydrolase activity	2.52E-04
22	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.52E-04
23	GO:0000064: L-ornithine transmembrane transporter activity	2.52E-04
24	GO:0048531: beta-1,3-galactosyltransferase activity	2.52E-04
25	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.55E-04
26	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.19E-04
27	GO:0008020: G-protein coupled photoreceptor activity	4.19E-04
28	GO:0070402: NADPH binding	4.19E-04
29	GO:0004180: carboxypeptidase activity	4.19E-04
30	GO:0015189: L-lysine transmembrane transporter activity	6.01E-04
31	GO:0017089: glycolipid transporter activity	6.01E-04
32	GO:0005354: galactose transmembrane transporter activity	6.01E-04
33	GO:0015181: arginine transmembrane transporter activity	6.01E-04
34	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.01E-04
35	GO:0001053: plastid sigma factor activity	7.98E-04
36	GO:0051861: glycolipid binding	7.98E-04
37	GO:0016987: sigma factor activity	7.98E-04
38	GO:0052793: pectin acetylesterase activity	7.98E-04
39	GO:0048038: quinone binding	8.59E-04
40	GO:0015144: carbohydrate transmembrane transporter activity	1.00E-03
41	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.10E-03
42	GO:0005351: sugar:proton symporter activity	1.16E-03
43	GO:0004556: alpha-amylase activity	1.23E-03
44	GO:0008200: ion channel inhibitor activity	1.23E-03
45	GO:0004605: phosphatidate cytidylyltransferase activity	1.23E-03
46	GO:0008017: microtubule binding	1.26E-03
47	GO:0008236: serine-type peptidase activity	1.50E-03
48	GO:0004673: protein histidine kinase activity	3.20E-03
49	GO:0003690: double-stranded DNA binding	3.55E-03
50	GO:0003777: microtubule motor activity	3.79E-03
51	GO:0005525: GTP binding	4.00E-03
52	GO:0008081: phosphoric diester hydrolase activity	4.23E-03
53	GO:0000155: phosphorelay sensor kinase activity	4.23E-03
54	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	6.24E-03
55	GO:0016491: oxidoreductase activity	8.33E-03
56	GO:0004527: exonuclease activity	9.26E-03
57	GO:0008080: N-acetyltransferase activity	9.26E-03
58	GO:0005355: glucose transmembrane transporter activity	9.74E-03
59	GO:0050662: coenzyme binding	9.74E-03
60	GO:0016853: isomerase activity	9.74E-03
61	GO:0019901: protein kinase binding	1.02E-02
62	GO:0042802: identical protein binding	1.07E-02
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.31E-02
64	GO:0016413: O-acetyltransferase activity	1.34E-02
65	GO:0016787: hydrolase activity	1.73E-02
66	GO:0004222: metalloendopeptidase activity	1.80E-02
67	GO:0030145: manganese ion binding	1.86E-02
68	GO:0003697: single-stranded DNA binding	1.99E-02
69	GO:0004871: signal transducer activity	2.03E-02
70	GO:0003924: GTPase activity	2.39E-02
71	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.94E-02
72	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.39E-02
73	GO:0016887: ATPase activity	3.70E-02
74	GO:0016746: transferase activity, transferring acyl groups	3.86E-02
75	GO:0016829: lyase activity	4.69E-02
76	GO:0004252: serine-type endopeptidase activity	4.78E-02
77	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	5.52E-10
3	GO:0080085: signal recognition particle, chloroplast targeting	2.52E-04
4	GO:0033281: TAT protein transport complex	4.19E-04
5	GO:0005871: kinesin complex	6.05E-04
6	GO:0009535: chloroplast thylakoid membrane	1.43E-03
7	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.28E-03
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.57E-03
9	GO:0005720: nuclear heterochromatin	2.57E-03
10	GO:0005874: microtubule	2.60E-03
11	GO:0016604: nuclear body	2.88E-03
12	GO:0009574: preprophase band	4.23E-03
13	GO:0030176: integral component of endoplasmic reticulum membrane	4.96E-03
14	GO:0005623: cell	6.24E-03
15	GO:0009524: phragmoplast	6.41E-03
16	GO:0009504: cell plate	1.02E-02
17	GO:0046658: anchored component of plasma membrane	1.11E-02
18	GO:0005694: chromosome	1.12E-02
19	GO:0009579: thylakoid	1.15E-02
20	GO:0009570: chloroplast stroma	1.18E-02
21	GO:0030529: intracellular ribonucleoprotein complex	1.39E-02
22	GO:0031969: chloroplast membrane	1.62E-02
23	GO:0009707: chloroplast outer membrane	1.68E-02
24	GO:0009941: chloroplast envelope	1.89E-02
25	GO:0005622: intracellular	1.91E-02
26	GO:0005819: spindle	2.12E-02
27	GO:0031977: thylakoid lumen	2.25E-02
28	GO:0005773: vacuole	2.33E-02
29	GO:0009536: plastid	2.90E-02
30	GO:0009505: plant-type cell wall	2.98E-02
31	GO:0016607: nuclear speck	3.39E-02
32	GO:0009706: chloroplast inner membrane	3.78E-02
33	GO:0010287: plastoglobule	4.27E-02
34	GO:0009543: chloroplast thylakoid lumen	4.44E-02