co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G66680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0036258: multivesicular body assembly	0.00E+00
2	GO:0006511: ubiquitin-dependent protein catabolic process	3.65E-13
3	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.84E-09
4	GO:0030433: ubiquitin-dependent ERAD pathway	7.82E-07
5	GO:1901430: positive regulation of syringal lignin biosynthetic process	2.64E-05
6	GO:0010372: positive regulation of gibberellin biosynthetic process	6.72E-05
7	GO:0051788: response to misfolded protein	6.72E-05
8	GO:0010498: proteasomal protein catabolic process	1.18E-04
9	GO:0010359: regulation of anion channel activity	1.18E-04
10	GO:0070676: intralumenal vesicle formation	1.76E-04
11	GO:0001676: long-chain fatty acid metabolic process	1.76E-04
12	GO:0009647: skotomorphogenesis	1.76E-04
13	GO:0010255: glucose mediated signaling pathway	1.76E-04
14	GO:0016579: protein deubiquitination	1.92E-04
15	GO:0010363: regulation of plant-type hypersensitive response	2.39E-04
16	GO:0006461: protein complex assembly	3.07E-04
17	GO:0006564: L-serine biosynthetic process	3.07E-04
18	GO:0043248: proteasome assembly	3.78E-04
19	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.53E-04
20	GO:0048528: post-embryonic root development	5.30E-04
21	GO:0000338: protein deneddylation	5.30E-04
22	GO:0051603: proteolysis involved in cellular protein catabolic process	6.05E-04
23	GO:0031540: regulation of anthocyanin biosynthetic process	6.10E-04
24	GO:0006402: mRNA catabolic process	6.10E-04
25	GO:0046686: response to cadmium ion	6.47E-04
26	GO:0006096: glycolytic process	6.87E-04
27	GO:0006972: hyperosmotic response	6.94E-04
28	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	6.94E-04
29	GO:0010120: camalexin biosynthetic process	6.94E-04
30	GO:0009553: embryo sac development	7.97E-04
31	GO:0009682: induced systemic resistance	1.05E-03
32	GO:0072593: reactive oxygen species metabolic process	1.05E-03
33	GO:0042744: hydrogen peroxide catabolic process	1.15E-03
34	GO:0006829: zinc II ion transport	1.25E-03
35	GO:0034605: cellular response to heat	1.35E-03
36	GO:0000162: tryptophan biosynthetic process	1.56E-03
37	GO:0034976: response to endoplasmic reticulum stress	1.56E-03
38	GO:0009651: response to salt stress	2.04E-03
39	GO:0040007: growth	2.14E-03
40	GO:0009411: response to UV	2.14E-03
41	GO:0010089: xylem development	2.26E-03
42	GO:0009561: megagametogenesis	2.26E-03
43	GO:0009306: protein secretion	2.26E-03
44	GO:0042147: retrograde transport, endosome to Golgi	2.39E-03
45	GO:0048868: pollen tube development	2.65E-03
46	GO:0008360: regulation of cell shape	2.65E-03
47	GO:0009646: response to absence of light	2.78E-03
48	GO:0055072: iron ion homeostasis	2.91E-03
49	GO:0048825: cotyledon development	2.91E-03
50	GO:0010193: response to ozone	3.05E-03
51	GO:0031047: gene silencing by RNA	3.19E-03
52	GO:0030163: protein catabolic process	3.33E-03
53	GO:0009567: double fertilization forming a zygote and endosperm	3.47E-03
54	GO:0006888: ER to Golgi vesicle-mediated transport	4.37E-03
55	GO:0010311: lateral root formation	4.85E-03
56	GO:0006499: N-terminal protein myristoylation	5.02E-03
57	GO:0010043: response to zinc ion	5.18E-03
58	GO:0010119: regulation of stomatal movement	5.18E-03
59	GO:0030001: metal ion transport	6.04E-03
60	GO:0009735: response to cytokinin	6.16E-03
61	GO:0006631: fatty acid metabolic process	6.21E-03
62	GO:0009793: embryo development ending in seed dormancy	6.26E-03
63	GO:0009640: photomorphogenesis	6.57E-03
64	GO:0009555: pollen development	6.74E-03
65	GO:0009809: lignin biosynthetic process	8.08E-03
66	GO:0009585: red, far-red light phototransduction	8.08E-03
67	GO:0009736: cytokinin-activated signaling pathway	8.08E-03
68	GO:0018105: peptidyl-serine phosphorylation	1.06E-02
69	GO:0042742: defense response to bacterium	1.37E-02
70	GO:0006979: response to oxidative stress	1.38E-02
71	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.65E-02
72	GO:0009617: response to bacterium	1.73E-02
73	GO:0015031: protein transport	1.74E-02
74	GO:0009826: unidimensional cell growth	2.02E-02
75	GO:0048366: leaf development	2.33E-02
76	GO:0046777: protein autophosphorylation	2.54E-02
77	GO:0007275: multicellular organism development	2.70E-02
78	GO:0045454: cell redox homeostasis	2.75E-02
79	GO:0006886: intracellular protein transport	2.81E-02
80	GO:0009408: response to heat	3.19E-02
81	GO:0006397: mRNA processing	3.29E-02
82	GO:0050832: defense response to fungus	4.06E-02
83	GO:0009908: flower development	4.47E-02
84	GO:0009738: abscisic acid-activated signaling pathway	4.69E-02
85	GO:0009416: response to light stimulus	4.80E-02
86	GO:0009611: response to wounding	4.88E-02
87	GO:0035556: intracellular signal transduction	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
2	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
3	GO:0004298: threonine-type endopeptidase activity	3.78E-09
4	GO:0036402: proteasome-activating ATPase activity	4.84E-09
5	GO:0017025: TBP-class protein binding	3.09E-07
6	GO:0008233: peptidase activity	4.81E-07
7	GO:0030955: potassium ion binding	1.41E-05
8	GO:0004743: pyruvate kinase activity	1.41E-05
9	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.21E-05
10	GO:0004640: phosphoribosylanthranilate isomerase activity	6.72E-05
11	GO:0004617: phosphoglycerate dehydrogenase activity	6.72E-05
12	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.42E-04
13	GO:0102391: decanoate--CoA ligase activity	4.53E-04
14	GO:0004467: long-chain fatty acid-CoA ligase activity	5.30E-04
15	GO:0003843: 1,3-beta-D-glucan synthase activity	6.94E-04
16	GO:0016887: ATPase activity	7.64E-04
17	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	9.59E-04
18	GO:0005516: calmodulin binding	1.49E-03
19	GO:0043130: ubiquitin binding	1.67E-03
20	GO:0000287: magnesium ion binding	2.07E-03
21	GO:0004601: peroxidase activity	2.11E-03
22	GO:0003756: protein disulfide isomerase activity	2.26E-03
23	GO:0046873: metal ion transmembrane transporter activity	2.65E-03
24	GO:0016853: isomerase activity	2.78E-03
25	GO:0004843: thiol-dependent ubiquitin-specific protease activity	3.05E-03
26	GO:0004197: cysteine-type endopeptidase activity	3.19E-03
27	GO:0004518: nuclease activity	3.19E-03
28	GO:0016597: amino acid binding	3.76E-03
29	GO:0020037: heme binding	3.85E-03
30	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.22E-03
31	GO:0004683: calmodulin-dependent protein kinase activity	4.37E-03
32	GO:0005524: ATP binding	5.61E-03
33	GO:0035091: phosphatidylinositol binding	6.94E-03
34	GO:0051287: NAD binding	7.50E-03
35	GO:0008565: protein transporter activity	1.38E-02
36	GO:0003729: mRNA binding	2.04E-02
37	GO:0016301: kinase activity	2.33E-02
38	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.91E-02
39	GO:0004722: protein serine/threonine phosphatase activity	2.94E-02
40	GO:0008289: lipid binding	4.04E-02
41	GO:0000166: nucleotide binding	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	4.73E-15
2	GO:0005839: proteasome core complex	3.78E-09
3	GO:0031597: cytosolic proteasome complex	8.65E-09
4	GO:0031595: nuclear proteasome complex	1.43E-08
5	GO:0008540: proteasome regulatory particle, base subcomplex	6.63E-08
6	GO:0019773: proteasome core complex, alpha-subunit complex	8.96E-06
7	GO:0016442: RISC complex	2.64E-05
8	GO:0005829: cytosol	5.33E-05
9	GO:0046861: glyoxysomal membrane	1.18E-04
10	GO:0000813: ESCRT I complex	3.07E-04
11	GO:0030904: retromer complex	3.78E-04
12	GO:0031902: late endosome membrane	4.05E-04
13	GO:0009514: glyoxysome	6.94E-04
14	GO:0000148: 1,3-beta-D-glucan synthase complex	6.94E-04
15	GO:0010494: cytoplasmic stress granule	7.80E-04
16	GO:0008180: COP9 signalosome	7.80E-04
17	GO:0008541: proteasome regulatory particle, lid subcomplex	1.05E-03
18	GO:0048471: perinuclear region of cytoplasm	1.05E-03
19	GO:0005774: vacuolar membrane	2.14E-03
20	GO:0005618: cell wall	2.63E-03
21	GO:0009504: cell plate	2.91E-03
22	GO:0000932: P-body	3.91E-03
23	GO:0005773: vacuole	4.10E-03
24	GO:0016020: membrane	5.94E-03
25	GO:0005635: nuclear envelope	8.48E-03
26	GO:0048046: apoplast	1.11E-02
27	GO:0005623: cell	1.23E-02
28	GO:0009505: plant-type cell wall	1.72E-02
29	GO:0005886: plasma membrane	1.77E-02
30	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.22E-02
31	GO:0005794: Golgi apparatus	2.56E-02
32	GO:0022626: cytosolic ribosome	4.65E-02