co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G65290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.76E-05
3	GO:0044376: RNA polymerase II complex import to nucleus	6.91E-05
4	GO:0035266: meristem growth	6.91E-05
5	GO:0007292: female gamete generation	6.91E-05
6	GO:1990022: RNA polymerase III complex localization to nucleus	6.91E-05
7	GO:0043687: post-translational protein modification	6.91E-05
8	GO:0009225: nucleotide-sugar metabolic process	1.54E-04
9	GO:0009156: ribonucleoside monophosphate biosynthetic process	1.66E-04
10	GO:0035335: peptidyl-tyrosine dephosphorylation	1.66E-04
11	GO:0042853: L-alanine catabolic process	1.66E-04
12	GO:0051788: response to misfolded protein	1.66E-04
13	GO:0030433: ubiquitin-dependent ERAD pathway	2.61E-04
14	GO:0010253: UDP-rhamnose biosynthetic process	2.81E-04
15	GO:0060968: regulation of gene silencing	2.81E-04
16	GO:0048577: negative regulation of short-day photoperiodism, flowering	4.06E-04
17	GO:0072334: UDP-galactose transmembrane transport	4.06E-04
18	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	4.06E-04
19	GO:0009790: embryo development	4.61E-04
20	GO:0009165: nucleotide biosynthetic process	5.42E-04
21	GO:0033320: UDP-D-xylose biosynthetic process	5.42E-04
22	GO:0033356: UDP-L-arabinose metabolic process	5.42E-04
23	GO:0018279: protein N-linked glycosylation via asparagine	6.87E-04
24	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	8.40E-04
25	GO:0048827: phyllome development	8.40E-04
26	GO:0048232: male gamete generation	8.40E-04
27	GO:0006555: methionine metabolic process	8.40E-04
28	GO:0043248: proteasome assembly	8.40E-04
29	GO:0042732: D-xylose metabolic process	8.40E-04
30	GO:0042176: regulation of protein catabolic process	8.40E-04
31	GO:0010315: auxin efflux	8.40E-04
32	GO:0006499: N-terminal protein myristoylation	9.79E-04
33	GO:0019509: L-methionine salvage from methylthioadenosine	9.99E-04
34	GO:2000033: regulation of seed dormancy process	9.99E-04
35	GO:0006457: protein folding	1.12E-03
36	GO:0006744: ubiquinone biosynthetic process	1.17E-03
37	GO:0000338: protein deneddylation	1.17E-03
38	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	1.34E-03
39	GO:0010078: maintenance of root meristem identity	1.34E-03
40	GO:0016192: vesicle-mediated transport	1.35E-03
41	GO:0010100: negative regulation of photomorphogenesis	1.53E-03
42	GO:0030968: endoplasmic reticulum unfolded protein response	1.53E-03
43	GO:0006002: fructose 6-phosphate metabolic process	1.53E-03
44	GO:0015780: nucleotide-sugar transport	1.73E-03
45	GO:0043067: regulation of programmed cell death	1.93E-03
46	GO:0048829: root cap development	2.14E-03
47	GO:0051555: flavonol biosynthetic process	2.14E-03
48	GO:0072593: reactive oxygen species metabolic process	2.36E-03
49	GO:0043085: positive regulation of catalytic activity	2.36E-03
50	GO:0010015: root morphogenesis	2.36E-03
51	GO:0006913: nucleocytoplasmic transport	2.36E-03
52	GO:0000266: mitochondrial fission	2.58E-03
53	GO:0055046: microgametogenesis	2.82E-03
54	GO:0009933: meristem structural organization	3.06E-03
55	GO:0090351: seedling development	3.30E-03
56	GO:0007033: vacuole organization	3.30E-03
57	GO:0010053: root epidermal cell differentiation	3.30E-03
58	GO:0009058: biosynthetic process	3.54E-03
59	GO:0034976: response to endoplasmic reticulum stress	3.56E-03
60	GO:2000377: regulation of reactive oxygen species metabolic process	3.81E-03
61	GO:0009116: nucleoside metabolic process	3.81E-03
62	GO:0000027: ribosomal large subunit assembly	3.81E-03
63	GO:0009863: salicylic acid mediated signaling pathway	3.81E-03
64	GO:0010187: negative regulation of seed germination	3.81E-03
65	GO:0008299: isoprenoid biosynthetic process	4.08E-03
66	GO:0006413: translational initiation	4.31E-03
67	GO:0042127: regulation of cell proliferation	5.20E-03
68	GO:0006623: protein targeting to vacuole	6.74E-03
69	GO:0000302: response to reactive oxygen species	7.07E-03
70	GO:0030163: protein catabolic process	7.73E-03
71	GO:0001666: response to hypoxia	9.13E-03
72	GO:0010029: regulation of seed germination	9.50E-03
73	GO:0006906: vesicle fusion	9.87E-03
74	GO:0030244: cellulose biosynthetic process	1.10E-02
75	GO:0009832: plant-type cell wall biogenesis	1.14E-02
76	GO:0010311: lateral root formation	1.14E-02
77	GO:0010043: response to zinc ion	1.22E-02
78	GO:0009910: negative regulation of flower development	1.22E-02
79	GO:0009867: jasmonic acid mediated signaling pathway	1.30E-02
80	GO:0045087: innate immune response	1.30E-02
81	GO:0009408: response to heat	1.31E-02
82	GO:0034599: cellular response to oxidative stress	1.34E-02
83	GO:0009651: response to salt stress	1.37E-02
84	GO:0006887: exocytosis	1.47E-02
85	GO:0009640: photomorphogenesis	1.56E-02
86	GO:0000209: protein polyubiquitination	1.60E-02
87	GO:0008643: carbohydrate transport	1.65E-02
88	GO:0009965: leaf morphogenesis	1.69E-02
89	GO:0000165: MAPK cascade	1.78E-02
90	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.78E-02
91	GO:0042538: hyperosmotic salinity response	1.83E-02
92	GO:0046686: response to cadmium ion	1.84E-02
93	GO:0006486: protein glycosylation	1.92E-02
94	GO:0009585: red, far-red light phototransduction	1.92E-02
95	GO:0006417: regulation of translation	2.07E-02
96	GO:0009908: flower development	2.10E-02
97	GO:0009735: response to cytokinin	2.13E-02
98	GO:0006096: glycolytic process	2.17E-02
99	GO:0048367: shoot system development	2.22E-02
100	GO:0048316: seed development	2.22E-02
101	GO:0009555: pollen development	2.33E-02
102	GO:0009740: gibberellic acid mediated signaling pathway	2.37E-02
103	GO:0009553: embryo sac development	2.42E-02
104	GO:0051301: cell division	2.54E-02
105	GO:0006511: ubiquitin-dependent protein catabolic process	3.16E-02
106	GO:0042744: hydrogen peroxide catabolic process	3.18E-02
107	GO:0009739: response to gibberellin	3.95E-02
108	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.95E-02
109	GO:0009617: response to bacterium	4.14E-02
110	GO:0071555: cell wall organization	4.69E-02
111	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0070577: lysine-acetylated histone binding	0.00E+00
3	GO:0019211: phosphatase activator activity	0.00E+00
4	GO:1990381: ubiquitin-specific protease binding	6.91E-05
5	GO:0019784: NEDD8-specific protease activity	6.91E-05
6	GO:0010297: heteropolysaccharide binding	1.66E-04
7	GO:0008460: dTDP-glucose 4,6-dehydratase activity	1.66E-04
8	GO:0010280: UDP-L-rhamnose synthase activity	1.66E-04
9	GO:0050347: trans-octaprenyltranstransferase activity	1.66E-04
10	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.66E-04
11	GO:0008805: carbon-monoxide oxygenase activity	1.66E-04
12	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.66E-04
13	GO:0022857: transmembrane transporter activity	2.60E-04
14	GO:0000030: mannosyltransferase activity	2.81E-04
15	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	2.81E-04
16	GO:0051082: unfolded protein binding	2.82E-04
17	GO:0004749: ribose phosphate diphosphokinase activity	4.06E-04
18	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	4.06E-04
19	GO:0070628: proteasome binding	5.42E-04
20	GO:0004576: oligosaccharyl transferase activity	5.42E-04
21	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	5.42E-04
22	GO:0004659: prenyltransferase activity	5.42E-04
23	GO:0005459: UDP-galactose transmembrane transporter activity	6.87E-04
24	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	6.87E-04
25	GO:0031593: polyubiquitin binding	8.40E-04
26	GO:0016688: L-ascorbate peroxidase activity	8.40E-04
27	GO:0036402: proteasome-activating ATPase activity	8.40E-04
28	GO:0048040: UDP-glucuronate decarboxylase activity	8.40E-04
29	GO:0004130: cytochrome-c peroxidase activity	8.40E-04
30	GO:0070403: NAD+ binding	9.99E-04
31	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.17E-03
32	GO:0003872: 6-phosphofructokinase activity	1.17E-03
33	GO:0000989: transcription factor activity, transcription factor binding	1.73E-03
34	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.73E-03
35	GO:0030234: enzyme regulator activity	2.14E-03
36	GO:0004161: dimethylallyltranstransferase activity	2.36E-03
37	GO:0005388: calcium-transporting ATPase activity	2.82E-03
38	GO:0017025: TBP-class protein binding	3.30E-03
39	GO:0004190: aspartic-type endopeptidase activity	3.30E-03
40	GO:0004867: serine-type endopeptidase inhibitor activity	3.30E-03
41	GO:0004725: protein tyrosine phosphatase activity	3.56E-03
42	GO:0016887: ATPase activity	3.61E-03
43	GO:0043130: ubiquitin binding	3.81E-03
44	GO:0003756: protein disulfide isomerase activity	5.20E-03
45	GO:0003743: translation initiation factor activity	5.39E-03
46	GO:0016853: isomerase activity	6.42E-03
47	GO:0005525: GTP binding	8.05E-03
48	GO:0005524: ATP binding	1.08E-02
49	GO:0005096: GTPase activator activity	1.14E-02
50	GO:0003746: translation elongation factor activity	1.30E-02
51	GO:0003924: GTPase activity	1.31E-02
52	GO:0000149: SNARE binding	1.38E-02
53	GO:0005484: SNAP receptor activity	1.56E-02
54	GO:0003729: mRNA binding	1.74E-02
55	GO:0031625: ubiquitin protein ligase binding	2.07E-02
56	GO:0045735: nutrient reservoir activity	2.17E-02
57	GO:0030170: pyridoxal phosphate binding	3.12E-02
58	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.18E-02
59	GO:0015297: antiporter activity	3.53E-02
60	GO:0008017: microtubule binding	3.77E-02
61	GO:0046872: metal ion binding	4.00E-02
62	GO:0000287: magnesium ion binding	4.91E-02
63	GO:0004601: peroxidase activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0005783: endoplasmic reticulum	1.30E-05
3	GO:0005788: endoplasmic reticulum lumen	3.91E-05
4	GO:0000836: Hrd1p ubiquitin ligase complex	6.91E-05
5	GO:0044322: endoplasmic reticulum quality control compartment	6.91E-05
6	GO:0000502: proteasome complex	1.74E-04
7	GO:0036513: Derlin-1 retrotranslocation complex	4.06E-04
8	GO:0005886: plasma membrane	6.63E-04
9	GO:0005945: 6-phosphofructokinase complex	6.87E-04
10	GO:0008250: oligosaccharyltransferase complex	6.87E-04
11	GO:0031597: cytosolic proteasome complex	9.99E-04
12	GO:0005794: Golgi apparatus	1.10E-03
13	GO:0031595: nuclear proteasome complex	1.17E-03
14	GO:0030131: clathrin adaptor complex	1.34E-03
15	GO:0000326: protein storage vacuole	1.53E-03
16	GO:0008180: COP9 signalosome	1.73E-03
17	GO:0031901: early endosome membrane	1.73E-03
18	GO:0030665: clathrin-coated vesicle membrane	1.93E-03
19	GO:0008540: proteasome regulatory particle, base subcomplex	1.93E-03
20	GO:0030125: clathrin vesicle coat	2.14E-03
21	GO:0008541: proteasome regulatory particle, lid subcomplex	2.36E-03
22	GO:0016020: membrane	2.98E-03
23	GO:0009524: phragmoplast	3.54E-03
24	GO:0043234: protein complex	3.56E-03
25	GO:0005829: cytosol	3.96E-03
26	GO:0005839: proteasome core complex	4.35E-03
27	GO:0031965: nuclear membrane	6.74E-03
28	GO:0016592: mediator complex	7.40E-03
29	GO:0005874: microtubule	8.55E-03
30	GO:0005819: spindle	1.38E-02
31	GO:0009506: plasmodesma	1.40E-02
32	GO:0005774: vacuolar membrane	1.44E-02
33	GO:0031201: SNARE complex	1.47E-02
34	GO:0005635: nuclear envelope	2.02E-02
35	GO:0005773: vacuole	2.71E-02
36	GO:0005615: extracellular space	3.95E-02
37	GO:0005768: endosome	4.23E-02
38	GO:0016021: integral component of membrane	4.43E-02