Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G64990

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010398: xylogalacturonan metabolic process0.00E+00
2GO:0072722: response to amitrole0.00E+00
3GO:0071985: multivesicular body sorting pathway0.00E+00
4GO:0010055: atrichoblast differentiation0.00E+00
5GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
6GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
7GO:0090400: stress-induced premature senescence0.00E+00
8GO:0018063: cytochrome c-heme linkage0.00E+00
9GO:0010793: regulation of mRNA export from nucleus0.00E+00
10GO:1904250: positive regulation of age-related resistance0.00E+00
11GO:1900057: positive regulation of leaf senescence3.99E-06
12GO:0009407: toxin catabolic process5.04E-06
13GO:0009617: response to bacterium3.71E-05
14GO:0051607: defense response to virus3.83E-05
15GO:0000162: tryptophan biosynthetic process7.44E-05
16GO:0006564: L-serine biosynthetic process7.79E-05
17GO:0010150: leaf senescence1.99E-04
18GO:0071669: plant-type cell wall organization or biogenesis2.04E-04
19GO:0009636: response to toxic substance2.12E-04
20GO:0016559: peroxisome fission2.58E-04
21GO:0043068: positive regulation of programmed cell death2.58E-04
22GO:0032107: regulation of response to nutrient levels2.70E-04
23GO:0010482: regulation of epidermal cell division2.70E-04
24GO:0010230: alternative respiration2.70E-04
25GO:0006680: glucosylceramide catabolic process2.70E-04
26GO:0042964: thioredoxin reduction2.70E-04
27GO:1900384: regulation of flavonol biosynthetic process2.70E-04
28GO:0010112: regulation of systemic acquired resistance3.84E-04
29GO:0009627: systemic acquired resistance5.92E-04
30GO:0015709: thiosulfate transport5.94E-04
31GO:0071422: succinate transmembrane transport5.94E-04
32GO:0050684: regulation of mRNA processing5.94E-04
33GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex5.94E-04
34GO:0000719: photoreactive repair5.94E-04
35GO:1902000: homogentisate catabolic process5.94E-04
36GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine5.94E-04
37GO:0009651: response to salt stress7.87E-04
38GO:0044375: regulation of peroxisome size9.62E-04
39GO:0071398: cellular response to fatty acid9.62E-04
40GO:0072661: protein targeting to plasma membrane9.62E-04
41GO:0010366: negative regulation of ethylene biosynthetic process9.62E-04
42GO:0010272: response to silver ion9.62E-04
43GO:0009072: aromatic amino acid family metabolic process9.62E-04
44GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity9.62E-04
45GO:0006591: ornithine metabolic process9.62E-04
46GO:0006048: UDP-N-acetylglucosamine biosynthetic process9.62E-04
47GO:0032784: regulation of DNA-templated transcription, elongation9.62E-04
48GO:0061158: 3'-UTR-mediated mRNA destabilization9.62E-04
49GO:0002230: positive regulation of defense response to virus by host9.62E-04
50GO:0006556: S-adenosylmethionine biosynthetic process9.62E-04
51GO:0090351: seedling development9.99E-04
52GO:0042742: defense response to bacterium1.13E-03
53GO:0070301: cellular response to hydrogen peroxide1.38E-03
54GO:0015729: oxaloacetate transport1.38E-03
55GO:1902290: positive regulation of defense response to oomycetes1.38E-03
56GO:0080024: indolebutyric acid metabolic process1.38E-03
57GO:0001676: long-chain fatty acid metabolic process1.38E-03
58GO:0016998: cell wall macromolecule catabolic process1.48E-03
59GO:0009693: ethylene biosynthetic process1.76E-03
60GO:0045227: capsule polysaccharide biosynthetic process1.84E-03
61GO:0048830: adventitious root development1.84E-03
62GO:0033358: UDP-L-arabinose biosynthetic process1.84E-03
63GO:0006621: protein retention in ER lumen1.84E-03
64GO:0010600: regulation of auxin biosynthetic process1.84E-03
65GO:1901002: positive regulation of response to salt stress1.84E-03
66GO:0033356: UDP-L-arabinose metabolic process1.84E-03
67GO:0051567: histone H3-K9 methylation1.84E-03
68GO:0015867: ATP transport1.84E-03
69GO:0010188: response to microbial phytotoxin1.84E-03
70GO:0031365: N-terminal protein amino acid modification2.35E-03
71GO:0071423: malate transmembrane transport2.35E-03
72GO:0046283: anthocyanin-containing compound metabolic process2.35E-03
73GO:0009620: response to fungus2.70E-03
74GO:0006623: protein targeting to vacuole2.79E-03
75GO:0015866: ADP transport2.90E-03
76GO:0006777: Mo-molybdopterin cofactor biosynthetic process2.90E-03
77GO:0009920: cell plate formation involved in plant-type cell wall biogenesis2.90E-03
78GO:0035435: phosphate ion transmembrane transport2.90E-03
79GO:0002238: response to molecule of fungal origin2.90E-03
80GO:0009759: indole glucosinolate biosynthetic process2.90E-03
81GO:0046686: response to cadmium ion2.99E-03
82GO:0000911: cytokinesis by cell plate formation3.49E-03
83GO:0009082: branched-chain amino acid biosynthetic process3.49E-03
84GO:0009099: valine biosynthetic process3.49E-03
85GO:0009611: response to wounding3.76E-03
86GO:0006979: response to oxidative stress3.87E-03
87GO:1902074: response to salt4.12E-03
88GO:0000122: negative regulation of transcription from RNA polymerase II promoter4.12E-03
89GO:0008272: sulfate transport4.12E-03
90GO:0050829: defense response to Gram-negative bacterium4.12E-03
91GO:0009615: response to virus4.30E-03
92GO:0050832: defense response to fungus4.45E-03
93GO:0006102: isocitrate metabolic process4.77E-03
94GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.77E-03
95GO:0009819: drought recovery4.77E-03
96GO:0006605: protein targeting4.77E-03
97GO:0006888: ER to Golgi vesicle-mediated transport5.06E-03
98GO:0017004: cytochrome complex assembly5.47E-03
99GO:0019430: removal of superoxide radicals5.47E-03
100GO:0010497: plasmodesmata-mediated intercellular transport5.47E-03
101GO:0009097: isoleucine biosynthetic process5.47E-03
102GO:0006997: nucleus organization5.47E-03
103GO:0010204: defense response signaling pathway, resistance gene-independent5.47E-03
104GO:0055114: oxidation-reduction process5.76E-03
105GO:0010311: lateral root formation5.89E-03
106GO:0015031: protein transport6.11E-03
107GO:0009835: fruit ripening6.20E-03
108GO:0046685: response to arsenic-containing substance6.20E-03
109GO:0051865: protein autoubiquitination6.20E-03
110GO:0010043: response to zinc ion6.49E-03
111GO:0048527: lateral root development6.49E-03
112GO:1900426: positive regulation of defense response to bacterium6.96E-03
113GO:0009098: leucine biosynthetic process6.96E-03
114GO:2000280: regulation of root development6.96E-03
115GO:0006099: tricarboxylic acid cycle7.44E-03
116GO:0009641: shade avoidance7.75E-03
117GO:0009870: defense response signaling pathway, resistance gene-dependent7.75E-03
118GO:0006032: chitin catabolic process7.75E-03
119GO:0009688: abscisic acid biosynthetic process7.75E-03
120GO:0006839: mitochondrial transport8.11E-03
121GO:0006631: fatty acid metabolic process8.46E-03
122GO:0048765: root hair cell differentiation8.58E-03
123GO:0009684: indoleacetic acid biosynthetic process8.58E-03
124GO:0009682: induced systemic resistance8.58E-03
125GO:0052544: defense response by callose deposition in cell wall8.58E-03
126GO:0000272: polysaccharide catabolic process8.58E-03
127GO:0042542: response to hydrogen peroxide8.81E-03
128GO:0051707: response to other organism9.18E-03
129GO:0071365: cellular response to auxin stimulus9.44E-03
130GO:0000266: mitochondrial fission9.44E-03
131GO:0012501: programmed cell death9.44E-03
132GO:0045037: protein import into chloroplast stroma9.44E-03
133GO:0055046: microgametogenesis1.03E-02
134GO:0010102: lateral root morphogenesis1.03E-02
135GO:0006807: nitrogen compound metabolic process1.03E-02
136GO:0006970: response to osmotic stress1.17E-02
137GO:0007033: vacuole organization1.22E-02
138GO:0009225: nucleotide-sugar metabolic process1.22E-02
139GO:0007031: peroxisome organization1.22E-02
140GO:0009825: multidimensional cell growth1.22E-02
141GO:0006417: regulation of translation1.37E-02
142GO:0080147: root hair cell development1.42E-02
143GO:0016192: vesicle-mediated transport1.49E-02
144GO:0051302: regulation of cell division1.52E-02
145GO:0006874: cellular calcium ion homeostasis1.52E-02
146GO:0010026: trichome differentiation1.52E-02
147GO:0043622: cortical microtubule organization1.52E-02
148GO:0009269: response to desiccation1.62E-02
149GO:0007005: mitochondrion organization1.73E-02
150GO:0071456: cellular response to hypoxia1.73E-02
151GO:0030245: cellulose catabolic process1.73E-02
152GO:0030433: ubiquitin-dependent ERAD pathway1.73E-02
153GO:0006730: one-carbon metabolic process1.73E-02
154GO:0045454: cell redox homeostasis1.75E-02
155GO:0006012: galactose metabolic process1.84E-02
156GO:0009411: response to UV1.84E-02
157GO:0009561: megagametogenesis1.95E-02
158GO:0009409: response to cold2.08E-02
159GO:0010118: stomatal movement2.19E-02
160GO:0010182: sugar mediated signaling pathway2.31E-02
161GO:0045489: pectin biosynthetic process2.31E-02
162GO:0006520: cellular amino acid metabolic process2.31E-02
163GO:0006662: glycerol ether metabolic process2.31E-02
164GO:0009058: biosynthetic process2.34E-02
165GO:0006814: sodium ion transport2.43E-02
166GO:0009851: auxin biosynthetic process2.55E-02
167GO:0008152: metabolic process2.58E-02
168GO:0000302: response to reactive oxygen species2.68E-02
169GO:0010193: response to ozone2.68E-02
170GO:0006635: fatty acid beta-oxidation2.68E-02
171GO:0040008: regulation of growth2.92E-02
172GO:0071281: cellular response to iron ion2.94E-02
173GO:0009567: double fertilization forming a zygote and endosperm3.07E-02
174GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.42E-02
175GO:0009734: auxin-activated signaling pathway3.50E-02
176GO:0010029: regulation of seed germination3.63E-02
177GO:0009816: defense response to bacterium, incompatible interaction3.63E-02
178GO:0006974: cellular response to DNA damage stimulus3.77E-02
179GO:0006906: vesicle fusion3.77E-02
180GO:0016049: cell growth4.06E-02
181GO:0009817: defense response to fungus, incompatible interaction4.21E-02
182GO:0030244: cellulose biosynthetic process4.21E-02
183GO:0009832: plant-type cell wall biogenesis4.36E-02
184GO:0007568: aging4.66E-02
RankGO TermAdjusted P value
1GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
2GO:0016034: maleylacetoacetate isomerase activity0.00E+00
3GO:0051670: inulinase activity0.00E+00
4GO:0004610: phosphoacetylglucosamine mutase activity0.00E+00
5GO:0102867: molybdenum cofactor sulfurtransferase activity0.00E+00
6GO:0004364: glutathione transferase activity1.23E-05
7GO:0102391: decanoate--CoA ligase activity1.56E-04
8GO:0004467: long-chain fatty acid-CoA ligase activity2.04E-04
9GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.70E-04
10GO:0004649: poly(ADP-ribose) glycohydrolase activity2.70E-04
11GO:0016229: steroid dehydrogenase activity2.70E-04
12GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity2.70E-04
13GO:0010179: IAA-Ala conjugate hydrolase activity2.70E-04
14GO:2001227: quercitrin binding2.70E-04
15GO:0004425: indole-3-glycerol-phosphate synthase activity2.70E-04
16GO:0070401: NADP+ binding2.70E-04
17GO:0051669: fructan beta-fructosidase activity2.70E-04
18GO:0032266: phosphatidylinositol-3-phosphate binding2.70E-04
19GO:0004348: glucosylceramidase activity2.70E-04
20GO:0031219: levanase activity2.70E-04
21GO:2001147: camalexin binding2.70E-04
22GO:0009000: selenocysteine lyase activity2.70E-04
23GO:0004617: phosphoglycerate dehydrogenase activity5.94E-04
24GO:0052691: UDP-arabinopyranose mutase activity5.94E-04
25GO:0015117: thiosulfate transmembrane transporter activity5.94E-04
26GO:1901677: phosphate transmembrane transporter activity5.94E-04
27GO:0004049: anthranilate synthase activity9.62E-04
28GO:0004478: methionine adenosyltransferase activity9.62E-04
29GO:0008265: Mo-molybdopterin cofactor sulfurase activity9.62E-04
30GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity9.62E-04
31GO:0043169: cation binding9.62E-04
32GO:0005310: dicarboxylic acid transmembrane transporter activity9.62E-04
33GO:0003955: NAD(P)H dehydrogenase (quinone) activity9.62E-04
34GO:0015141: succinate transmembrane transporter activity9.62E-04
35GO:0052654: L-leucine transaminase activity1.38E-03
36GO:0017077: oxidative phosphorylation uncoupler activity1.38E-03
37GO:0052655: L-valine transaminase activity1.38E-03
38GO:0015131: oxaloacetate transmembrane transporter activity1.38E-03
39GO:0004449: isocitrate dehydrogenase (NAD+) activity1.38E-03
40GO:0005432: calcium:sodium antiporter activity1.38E-03
41GO:0010178: IAA-amino acid conjugate hydrolase activity1.38E-03
42GO:0016656: monodehydroascorbate reductase (NADH) activity1.38E-03
43GO:0008106: alcohol dehydrogenase (NADP+) activity1.38E-03
44GO:0052656: L-isoleucine transaminase activity1.38E-03
45GO:0050373: UDP-arabinose 4-epimerase activity1.84E-03
46GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.84E-03
47GO:0046923: ER retention sequence binding1.84E-03
48GO:0004084: branched-chain-amino-acid transaminase activity1.84E-03
49GO:0016866: intramolecular transferase activity1.84E-03
50GO:0004499: N,N-dimethylaniline monooxygenase activity1.92E-03
51GO:0030151: molybdenum ion binding2.35E-03
52GO:0018685: alkane 1-monooxygenase activity2.35E-03
53GO:0004791: thioredoxin-disulfide reductase activity2.60E-03
54GO:0008200: ion channel inhibitor activity2.90E-03
55GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity2.90E-03
56GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity2.90E-03
57GO:0035252: UDP-xylosyltransferase activity2.90E-03
58GO:0015217: ADP transmembrane transporter activity3.49E-03
59GO:0051920: peroxiredoxin activity3.49E-03
60GO:0004602: glutathione peroxidase activity3.49E-03
61GO:0005347: ATP transmembrane transporter activity3.49E-03
62GO:0003978: UDP-glucose 4-epimerase activity3.49E-03
63GO:0004656: procollagen-proline 4-dioxygenase activity3.49E-03
64GO:0008483: transaminase activity3.83E-03
65GO:0008237: metallopeptidase activity3.83E-03
66GO:0008235: metalloexopeptidase activity4.12E-03
67GO:0015140: malate transmembrane transporter activity4.12E-03
68GO:0008320: protein transmembrane transporter activity4.12E-03
69GO:0043295: glutathione binding4.12E-03
70GO:0030170: pyridoxal phosphate binding4.61E-03
71GO:0016209: antioxidant activity4.77E-03
72GO:0052747: sinapyl alcohol dehydrogenase activity4.77E-03
73GO:0004033: aldo-keto reductase (NADP) activity4.77E-03
74GO:0015491: cation:cation antiporter activity4.77E-03
75GO:0004806: triglyceride lipase activity5.06E-03
76GO:0015297: antiporter activity5.73E-03
77GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity6.20E-03
78GO:0004568: chitinase activity7.75E-03
79GO:0050661: NADP binding8.11E-03
80GO:0004177: aminopeptidase activity8.58E-03
81GO:0045551: cinnamyl-alcohol dehydrogenase activity9.44E-03
82GO:0015116: sulfate transmembrane transporter activity9.44E-03
83GO:0005198: structural molecule activity1.03E-02
84GO:0004601: peroxidase activity1.06E-02
85GO:0004867: serine-type endopeptidase inhibitor activity1.22E-02
86GO:0008061: chitin binding1.22E-02
87GO:0004970: ionotropic glutamate receptor activity1.22E-02
88GO:0005217: intracellular ligand-gated ion channel activity1.22E-02
89GO:0050660: flavin adenine dinucleotide binding1.28E-02
90GO:0031418: L-ascorbic acid binding1.42E-02
91GO:0043130: ubiquitin binding1.42E-02
92GO:0001046: core promoter sequence-specific DNA binding1.42E-02
93GO:0015035: protein disulfide oxidoreductase activity1.82E-02
94GO:0016746: transferase activity, transferring acyl groups1.82E-02
95GO:0016760: cellulose synthase (UDP-forming) activity1.84E-02
96GO:0008810: cellulase activity1.84E-02
97GO:0003727: single-stranded RNA binding1.95E-02
98GO:0047134: protein-disulfide reductase activity2.07E-02
99GO:0008080: N-acetyltransferase activity2.31E-02
100GO:0010181: FMN binding2.43E-02
101GO:0004872: receptor activity2.55E-02
102GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.94E-02
103GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.21E-02
104GO:0016597: amino acid binding3.34E-02
105GO:0005509: calcium ion binding3.38E-02
106GO:0004683: calmodulin-dependent protein kinase activity3.91E-02
107GO:0030247: polysaccharide binding3.91E-02
108GO:0003824: catalytic activity4.35E-02
109GO:0030145: manganese ion binding4.66E-02
110GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.97E-02
RankGO TermAdjusted P value
1GO:0045252: oxoglutarate dehydrogenase complex2.70E-04
2GO:0000138: Golgi trans cisterna2.70E-04
3GO:0005779: integral component of peroxisomal membrane3.19E-04
4GO:0005794: Golgi apparatus3.47E-04
5GO:0005886: plasma membrane3.55E-04
6GO:0000814: ESCRT II complex5.94E-04
7GO:0005950: anthranilate synthase complex5.94E-04
8GO:0005829: cytosol7.46E-04
9GO:0042406: extrinsic component of endoplasmic reticulum membrane9.62E-04
10GO:0030658: transport vesicle membrane1.38E-03
11GO:0009504: cell plate2.79E-03
12GO:0031965: nuclear membrane2.79E-03
13GO:0005789: endoplasmic reticulum membrane2.87E-03
14GO:0032580: Golgi cisterna membrane3.61E-03
15GO:0005778: peroxisomal membrane3.83E-03
16GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane4.12E-03
17GO:0005788: endoplasmic reticulum lumen4.55E-03
18GO:0005777: peroxisome4.61E-03
19GO:0005783: endoplasmic reticulum5.86E-03
20GO:0031901: early endosome membrane6.20E-03
21GO:0009506: plasmodesma6.88E-03
22GO:0017119: Golgi transport complex7.75E-03
23GO:0005768: endosome1.03E-02
24GO:0005795: Golgi stack1.22E-02
25GO:0016021: integral component of membrane1.25E-02
26GO:0005769: early endosome1.32E-02
27GO:0005741: mitochondrial outer membrane1.62E-02
28GO:0048046: apoplast1.84E-02
29GO:0030136: clathrin-coated vesicle2.07E-02
30GO:0005743: mitochondrial inner membrane2.08E-02
31GO:0005770: late endosome2.31E-02
32GO:0019898: extrinsic component of membrane2.55E-02
33GO:0005802: trans-Golgi network2.70E-02
34GO:0071944: cell periphery2.94E-02
35GO:0005737: cytoplasm3.09E-02
36GO:0046658: anchored component of plasma membrane4.04E-02
37GO:0005774: vacuolar membrane4.10E-02
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Gene type



Gene DE type