Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G64940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902171: regulation of tocopherol cyclase activity0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0016118: carotenoid catabolic process0.00E+00
5GO:0046471: phosphatidylglycerol metabolic process0.00E+00
6GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
7GO:0009661: chromoplast organization0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I1.34E-08
9GO:0015979: photosynthesis6.70E-06
10GO:0009657: plastid organization1.43E-05
11GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.86E-05
12GO:0010207: photosystem II assembly8.15E-05
13GO:0015995: chlorophyll biosynthetic process1.01E-04
14GO:0006636: unsaturated fatty acid biosynthetic process1.15E-04
15GO:0010218: response to far red light1.45E-04
16GO:0009768: photosynthesis, light harvesting in photosystem I1.55E-04
17GO:0009637: response to blue light1.85E-04
18GO:0009854: oxidative photosynthetic carbon pathway2.12E-04
19GO:0055114: oxidation-reduction process2.82E-04
20GO:0010114: response to red light2.83E-04
21GO:0031998: regulation of fatty acid beta-oxidation3.29E-04
22GO:0034337: RNA folding3.29E-04
23GO:0000476: maturation of 4.5S rRNA3.29E-04
24GO:0000967: rRNA 5'-end processing3.29E-04
25GO:0043953: protein transport by the Tat complex3.29E-04
26GO:0015671: oxygen transport3.29E-04
27GO:0019544: arginine catabolic process to glutamate3.29E-04
28GO:0071277: cellular response to calcium ion3.29E-04
29GO:0000481: maturation of 5S rRNA3.29E-04
30GO:0042371: vitamin K biosynthetic process3.29E-04
31GO:0065002: intracellular protein transmembrane transport3.29E-04
32GO:0071461: cellular response to redox state3.29E-04
33GO:0080093: regulation of photorespiration3.29E-04
34GO:0050821: protein stabilization3.48E-04
35GO:0019252: starch biosynthetic process4.25E-04
36GO:0071482: cellular response to light stimulus4.26E-04
37GO:0006098: pentose-phosphate shunt5.12E-04
38GO:0005982: starch metabolic process6.05E-04
39GO:0016121: carotene catabolic process7.18E-04
40GO:0034470: ncRNA processing7.18E-04
41GO:0051645: Golgi localization7.18E-04
42GO:0080029: cellular response to boron-containing substance levels7.18E-04
43GO:0080005: photosystem stoichiometry adjustment7.18E-04
44GO:0016124: xanthophyll catabolic process7.18E-04
45GO:0010541: acropetal auxin transport7.18E-04
46GO:0060151: peroxisome localization7.18E-04
47GO:0034755: iron ion transmembrane transport7.18E-04
48GO:0071457: cellular response to ozone7.18E-04
49GO:1904143: positive regulation of carotenoid biosynthetic process7.18E-04
50GO:0018298: protein-chromophore linkage1.04E-03
51GO:0006094: gluconeogenesis1.05E-03
52GO:0030048: actin filament-based movement1.05E-03
53GO:0005977: glycogen metabolic process1.16E-03
54GO:0090391: granum assembly1.16E-03
55GO:0051646: mitochondrion localization1.16E-03
56GO:0090436: leaf pavement cell development1.16E-03
57GO:0010160: formation of animal organ boundary1.16E-03
58GO:0010020: chloroplast fission1.18E-03
59GO:0009853: photorespiration1.39E-03
60GO:1902358: sulfate transmembrane transport1.67E-03
61GO:0071484: cellular response to light intensity1.67E-03
62GO:0009152: purine ribonucleotide biosynthetic process1.67E-03
63GO:0046653: tetrahydrofolate metabolic process1.67E-03
64GO:0009052: pentose-phosphate shunt, non-oxidative branch1.67E-03
65GO:0043481: anthocyanin accumulation in tissues in response to UV light1.67E-03
66GO:0010731: protein glutathionylation1.67E-03
67GO:2001141: regulation of RNA biosynthetic process1.67E-03
68GO:0046713: borate transport1.67E-03
69GO:0006810: transport1.69E-03
70GO:0005975: carbohydrate metabolic process1.83E-03
71GO:0019748: secondary metabolic process2.16E-03
72GO:0015976: carbon utilization2.24E-03
73GO:0071486: cellular response to high light intensity2.24E-03
74GO:0015689: molybdate ion transport2.24E-03
75GO:0009765: photosynthesis, light harvesting2.24E-03
76GO:0015994: chlorophyll metabolic process2.24E-03
77GO:2000122: negative regulation of stomatal complex development2.24E-03
78GO:0006546: glycine catabolic process2.24E-03
79GO:0010021: amylopectin biosynthetic process2.24E-03
80GO:0010037: response to carbon dioxide2.24E-03
81GO:0006465: signal peptide processing2.87E-03
82GO:0071493: cellular response to UV-B2.87E-03
83GO:0016120: carotene biosynthetic process2.87E-03
84GO:0006564: L-serine biosynthetic process2.87E-03
85GO:0000278: mitotic cell cycle2.87E-03
86GO:0006097: glyoxylate cycle2.87E-03
87GO:0006096: glycolytic process3.48E-03
88GO:0009658: chloroplast organization3.50E-03
89GO:0042549: photosystem II stabilization3.54E-03
90GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.54E-03
91GO:0060918: auxin transport3.54E-03
92GO:1902456: regulation of stomatal opening3.54E-03
93GO:0010190: cytochrome b6f complex assembly3.54E-03
94GO:0009228: thiamine biosynthetic process3.54E-03
95GO:0050665: hydrogen peroxide biosynthetic process3.54E-03
96GO:0009791: post-embryonic development3.72E-03
97GO:0071333: cellular response to glucose stimulus4.26E-03
98GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity4.26E-03
99GO:0010189: vitamin E biosynthetic process4.26E-03
100GO:0009395: phospholipid catabolic process5.03E-03
101GO:1900056: negative regulation of leaf senescence5.03E-03
102GO:0009645: response to low light intensity stimulus5.03E-03
103GO:0008272: sulfate transport5.03E-03
104GO:0009769: photosynthesis, light harvesting in photosystem II5.03E-03
105GO:0052543: callose deposition in cell wall5.85E-03
106GO:0016559: peroxisome fission5.85E-03
107GO:0008610: lipid biosynthetic process5.85E-03
108GO:0009642: response to light intensity5.85E-03
109GO:0070413: trehalose metabolism in response to stress5.85E-03
110GO:0009704: de-etiolation5.85E-03
111GO:0032508: DNA duplex unwinding5.85E-03
112GO:2000031: regulation of salicylic acid mediated signaling pathway6.71E-03
113GO:0019430: removal of superoxide radicals6.71E-03
114GO:0010204: defense response signaling pathway, resistance gene-independent6.71E-03
115GO:0009821: alkaloid biosynthetic process7.60E-03
116GO:0019432: triglyceride biosynthetic process7.60E-03
117GO:0090333: regulation of stomatal closure7.60E-03
118GO:0006783: heme biosynthetic process7.60E-03
119GO:0006779: porphyrin-containing compound biosynthetic process8.55E-03
120GO:0010380: regulation of chlorophyll biosynthetic process8.55E-03
121GO:0007346: regulation of mitotic cell cycle8.55E-03
122GO:0009641: shade avoidance9.53E-03
123GO:0006782: protoporphyrinogen IX biosynthetic process9.53E-03
124GO:0043085: positive regulation of catalytic activity1.06E-02
125GO:0006879: cellular iron ion homeostasis1.06E-02
126GO:0006352: DNA-templated transcription, initiation1.06E-02
127GO:0006631: fatty acid metabolic process1.14E-02
128GO:0008361: regulation of cell size1.16E-02
129GO:0002213: defense response to insect1.16E-02
130GO:0009767: photosynthetic electron transport chain1.27E-02
131GO:0006108: malate metabolic process1.27E-02
132GO:0006006: glucose metabolic process1.27E-02
133GO:0010540: basipetal auxin transport1.38E-02
134GO:0048467: gynoecium development1.38E-02
135GO:0010143: cutin biosynthetic process1.38E-02
136GO:0019253: reductive pentose-phosphate cycle1.38E-02
137GO:0010223: secondary shoot formation1.38E-02
138GO:0019762: glucosinolate catabolic process1.62E-02
139GO:0010025: wax biosynthetic process1.62E-02
140GO:0042023: DNA endoreduplication1.62E-02
141GO:0009833: plant-type primary cell wall biogenesis1.62E-02
142GO:0051603: proteolysis involved in cellular protein catabolic process1.73E-02
143GO:0005992: trehalose biosynthetic process1.75E-02
144GO:0009695: jasmonic acid biosynthetic process1.87E-02
145GO:0019915: lipid storage2.00E-02
146GO:0009269: response to desiccation2.00E-02
147GO:0016114: terpenoid biosynthetic process2.00E-02
148GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.11E-02
149GO:0030245: cellulose catabolic process2.14E-02
150GO:2000022: regulation of jasmonic acid mediated signaling pathway2.14E-02
151GO:0030433: ubiquitin-dependent ERAD pathway2.14E-02
152GO:0035428: hexose transmembrane transport2.14E-02
153GO:0071215: cellular response to abscisic acid stimulus2.27E-02
154GO:0048443: stamen development2.41E-02
155GO:0009306: protein secretion2.41E-02
156GO:0010118: stomatal movement2.70E-02
157GO:0042631: cellular response to water deprivation2.70E-02
158GO:0042335: cuticle development2.70E-02
159GO:0009958: positive gravitropism2.85E-02
160GO:0006520: cellular amino acid metabolic process2.85E-02
161GO:0071472: cellular response to salt stress2.85E-02
162GO:0010154: fruit development2.85E-02
163GO:0006662: glycerol ether metabolic process2.85E-02
164GO:0046323: glucose import2.85E-02
165GO:0007059: chromosome segregation3.00E-02
166GO:0032259: methylation3.12E-02
167GO:0009058: biosynthetic process3.14E-02
168GO:0010193: response to ozone3.31E-02
169GO:0032502: developmental process3.47E-02
170GO:0009630: gravitropism3.47E-02
171GO:0007264: small GTPase mediated signal transduction3.47E-02
172GO:1901657: glycosyl compound metabolic process3.63E-02
173GO:0010090: trichome morphogenesis3.63E-02
174GO:0006633: fatty acid biosynthetic process3.74E-02
175GO:0009567: double fertilization forming a zygote and endosperm3.79E-02
176GO:0009639: response to red or far red light3.79E-02
177GO:0051607: defense response to virus4.13E-02
178GO:0010027: thylakoid membrane organization4.30E-02
179GO:0009627: systemic acquired resistance4.65E-02
180GO:0042128: nitrate assimilation4.65E-02
181GO:0006950: response to stress4.82E-02
RankGO TermAdjusted P value
1GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
2GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0045550: geranylgeranyl reductase activity0.00E+00
5GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
6GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
7GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
8GO:0008465: glycerate dehydrogenase activity0.00E+00
9GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
12GO:0009011: starch synthase activity5.46E-07
13GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.89E-05
14GO:0031409: pigment binding1.15E-04
15GO:0004332: fructose-bisphosphate aldolase activity1.56E-04
16GO:0004185: serine-type carboxypeptidase activity2.83E-04
17GO:0005344: oxygen transporter activity3.29E-04
18GO:0035671: enone reductase activity3.29E-04
19GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.29E-04
20GO:0030794: (S)-coclaurine-N-methyltransferase activity3.29E-04
21GO:0015168: glycerol transmembrane transporter activity3.29E-04
22GO:0004328: formamidase activity3.29E-04
23GO:0042802: identical protein binding5.41E-04
24GO:0009977: proton motive force dependent protein transmembrane transporter activity7.18E-04
25GO:0004617: phosphoglycerate dehydrogenase activity7.18E-04
26GO:0004047: aminomethyltransferase activity7.18E-04
27GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity7.18E-04
28GO:0033201: alpha-1,4-glucan synthase activity7.18E-04
29GO:0004312: fatty acid synthase activity7.18E-04
30GO:0018708: thiol S-methyltransferase activity7.18E-04
31GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.18E-04
32GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity7.18E-04
33GO:0019172: glyoxalase III activity7.18E-04
34GO:0019156: isoamylase activity7.18E-04
35GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.18E-04
36GO:0008883: glutamyl-tRNA reductase activity7.18E-04
37GO:0047746: chlorophyllase activity7.18E-04
38GO:0016168: chlorophyll binding7.98E-04
39GO:0004565: beta-galactosidase activity1.05E-03
40GO:0008864: formyltetrahydrofolate deformylase activity1.16E-03
41GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.16E-03
42GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.16E-03
43GO:0004373: glycogen (starch) synthase activity1.16E-03
44GO:0050734: hydroxycinnamoyltransferase activity1.16E-03
45GO:0004751: ribose-5-phosphate isomerase activity1.16E-03
46GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.16E-03
47GO:0003774: motor activity1.18E-03
48GO:0003993: acid phosphatase activity1.47E-03
49GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.67E-03
50GO:0001872: (1->3)-beta-D-glucan binding1.67E-03
51GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.67E-03
52GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.67E-03
53GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.67E-03
54GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.67E-03
55GO:0016851: magnesium chelatase activity1.67E-03
56GO:0046715: borate transmembrane transporter activity1.67E-03
57GO:0001053: plastid sigma factor activity2.24E-03
58GO:0008453: alanine-glyoxylate transaminase activity2.24E-03
59GO:0016987: sigma factor activity2.24E-03
60GO:0015098: molybdate ion transmembrane transporter activity2.24E-03
61GO:0008891: glycolate oxidase activity2.24E-03
62GO:0015204: urea transmembrane transporter activity2.24E-03
63GO:0051287: NAD binding2.45E-03
64GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.87E-03
65GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.87E-03
66GO:2001070: starch binding3.54E-03
67GO:0004556: alpha-amylase activity3.54E-03
68GO:0004462: lactoylglutathione lyase activity3.54E-03
69GO:0004784: superoxide dismutase activity3.54E-03
70GO:0016615: malate dehydrogenase activity3.54E-03
71GO:0016788: hydrolase activity, acting on ester bonds3.60E-03
72GO:0048038: quinone binding3.98E-03
73GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.26E-03
74GO:0030060: L-malate dehydrogenase activity4.26E-03
75GO:0005337: nucleoside transmembrane transporter activity5.85E-03
76GO:0008135: translation factor activity, RNA binding6.71E-03
77GO:0008271: secondary active sulfate transmembrane transporter activity6.71E-03
78GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.55E-03
79GO:0005381: iron ion transmembrane transporter activity8.55E-03
80GO:0016844: strictosidine synthase activity8.55E-03
81GO:0008047: enzyme activator activity9.53E-03
82GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.84E-03
83GO:0047372: acylglycerol lipase activity1.06E-02
84GO:0050661: NADP binding1.09E-02
85GO:0015116: sulfate transmembrane transporter activity1.16E-02
86GO:0016491: oxidoreductase activity1.16E-02
87GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.20E-02
88GO:0010329: auxin efflux transmembrane transporter activity1.27E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity1.27E-02
90GO:0004089: carbonate dehydratase activity1.27E-02
91GO:0051537: 2 iron, 2 sulfur cluster binding1.34E-02
92GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.38E-02
93GO:0008266: poly(U) RNA binding1.38E-02
94GO:0008168: methyltransferase activity1.47E-02
95GO:0043130: ubiquitin binding1.75E-02
96GO:0005528: FK506 binding1.75E-02
97GO:0005216: ion channel activity1.87E-02
98GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.04E-02
99GO:0016760: cellulose synthase (UDP-forming) activity2.27E-02
100GO:0022891: substrate-specific transmembrane transporter activity2.27E-02
101GO:0008810: cellulase activity2.27E-02
102GO:0003727: single-stranded RNA binding2.41E-02
103GO:0047134: protein-disulfide reductase activity2.55E-02
104GO:0004791: thioredoxin-disulfide reductase activity3.00E-02
105GO:0016853: isomerase activity3.00E-02
106GO:0005355: glucose transmembrane transporter activity3.00E-02
107GO:0010181: FMN binding3.00E-02
108GO:0019901: protein kinase binding3.15E-02
109GO:0009055: electron carrier activity3.59E-02
110GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.63E-02
111GO:0016759: cellulose synthase activity3.79E-02
112GO:0016791: phosphatase activity3.79E-02
113GO:0008483: transaminase activity3.96E-02
114GO:0016597: amino acid binding4.13E-02
115GO:0015250: water channel activity4.30E-02
116GO:0003743: translation initiation factor activity4.78E-02
117GO:0102483: scopolin beta-glucosidase activity4.82E-02
118GO:0030247: polysaccharide binding4.82E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast1.32E-28
4GO:0009535: chloroplast thylakoid membrane1.27E-13
5GO:0009534: chloroplast thylakoid3.77E-12
6GO:0009941: chloroplast envelope1.42E-10
7GO:0009570: chloroplast stroma2.85E-09
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.98E-09
9GO:0009543: chloroplast thylakoid lumen1.62E-06
10GO:0033281: TAT protein transport complex1.74E-05
11GO:0010287: plastoglobule1.83E-05
12GO:0009522: photosystem I2.75E-05
13GO:0009579: thylakoid3.35E-05
14GO:0005773: vacuole4.33E-05
15GO:0030076: light-harvesting complex9.72E-05
16GO:0048046: apoplast9.74E-05
17GO:0031969: chloroplast membrane2.39E-04
18GO:0031977: thylakoid lumen2.48E-04
19GO:0031361: integral component of thylakoid membrane3.29E-04
20GO:0005787: signal peptidase complex3.29E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]3.29E-04
22GO:0009523: photosystem II4.25E-04
23GO:0016459: myosin complex7.06E-04
24GO:0043036: starch grain7.18E-04
25GO:0010007: magnesium chelatase complex1.16E-03
26GO:0030095: chloroplast photosystem II1.18E-03
27GO:0009654: photosystem II oxygen evolving complex1.80E-03
28GO:0005777: peroxisome2.23E-03
29GO:0009526: plastid envelope2.24E-03
30GO:0009517: PSII associated light-harvesting complex II2.24E-03
31GO:0019898: extrinsic component of membrane3.72E-03
32GO:0009501: amyloplast5.85E-03
33GO:0000307: cyclin-dependent protein kinase holoenzyme complex6.71E-03
34GO:0005765: lysosomal membrane1.06E-02
35GO:0032040: small-subunit processome1.16E-02
36GO:0043234: protein complex1.62E-02
37GO:0042651: thylakoid membrane1.87E-02
38GO:0005623: cell3.06E-02
39GO:0010319: stromule3.96E-02
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Gene type



Gene DE type