co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G64770

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0070178: D-serine metabolic process	0.00E+00
3	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0042407: cristae formation	0.00E+00
9	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
10	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
11	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
12	GO:0009069: serine family amino acid metabolic process	0.00E+00
13	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
14	GO:0061157: mRNA destabilization	0.00E+00
15	GO:0002184: cytoplasmic translational termination	0.00E+00
16	GO:0005983: starch catabolic process	2.90E-06
17	GO:0032544: plastid translation	2.49E-05
18	GO:0009658: chloroplast organization	5.30E-05
19	GO:0046739: transport of virus in multicellular host	5.73E-05
20	GO:0015979: photosynthesis	1.37E-04
21	GO:0015995: chlorophyll biosynthetic process	1.82E-04
22	GO:0009955: adaxial/abaxial pattern specification	3.00E-04
23	GO:0048437: floral organ development	3.88E-04
24	GO:0000025: maltose catabolic process	4.13E-04
25	GO:0005980: glycogen catabolic process	4.13E-04
26	GO:0030198: extracellular matrix organization	4.13E-04
27	GO:0010480: microsporocyte differentiation	4.13E-04
28	GO:0042371: vitamin K biosynthetic process	4.13E-04
29	GO:0043686: co-translational protein modification	4.13E-04
30	GO:0043007: maintenance of rDNA	4.13E-04
31	GO:0005991: trehalose metabolic process	4.13E-04
32	GO:0006747: FAD biosynthetic process	4.13E-04
33	GO:0000023: maltose metabolic process	4.13E-04
34	GO:0010497: plasmodesmata-mediated intercellular transport	5.92E-04
35	GO:0006783: heme biosynthetic process	7.09E-04
36	GO:0009629: response to gravity	8.93E-04
37	GO:0019388: galactose catabolic process	8.93E-04
38	GO:0007154: cell communication	8.93E-04
39	GO:0018026: peptidyl-lysine monomethylation	8.93E-04
40	GO:0006423: cysteinyl-tRNA aminoacylation	8.93E-04
41	GO:0042325: regulation of phosphorylation	8.93E-04
42	GO:0006568: tryptophan metabolic process	8.93E-04
43	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.93E-04
44	GO:0009773: photosynthetic electron transport in photosystem I	1.12E-03
45	GO:0010027: thylakoid membrane organization	1.13E-03
46	GO:0006006: glucose metabolic process	1.45E-03
47	GO:0006696: ergosterol biosynthetic process	1.45E-03
48	GO:2001295: malonyl-CoA biosynthetic process	1.45E-03
49	GO:0033591: response to L-ascorbic acid	1.45E-03
50	GO:0009817: defense response to fungus, incompatible interaction	1.57E-03
51	GO:0009813: flavonoid biosynthetic process	1.68E-03
52	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.10E-03
53	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.10E-03
54	GO:0010731: protein glutathionylation	2.10E-03
55	GO:0009590: detection of gravity	2.10E-03
56	GO:0006168: adenine salvage	2.10E-03
57	GO:0016556: mRNA modification	2.10E-03
58	GO:0043572: plastid fission	2.10E-03
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.10E-03
60	GO:0045338: farnesyl diphosphate metabolic process	2.10E-03
61	GO:0006166: purine ribonucleoside salvage	2.10E-03
62	GO:0009102: biotin biosynthetic process	2.10E-03
63	GO:0010601: positive regulation of auxin biosynthetic process	2.10E-03
64	GO:0006418: tRNA aminoacylation for protein translation	2.50E-03
65	GO:0006633: fatty acid biosynthetic process	2.60E-03
66	GO:0061077: chaperone-mediated protein folding	2.75E-03
67	GO:0010109: regulation of photosynthesis	2.82E-03
68	GO:0019464: glycine decarboxylation via glycine cleavage system	2.82E-03
69	GO:0032543: mitochondrial translation	3.61E-03
70	GO:0016120: carotene biosynthetic process	3.61E-03
71	GO:0006564: L-serine biosynthetic process	3.61E-03
72	GO:0006508: proteolysis	3.61E-03
73	GO:0010236: plastoquinone biosynthetic process	3.61E-03
74	GO:0031365: N-terminal protein amino acid modification	3.61E-03
75	GO:0009107: lipoate biosynthetic process	3.61E-03
76	GO:0044209: AMP salvage	3.61E-03
77	GO:0016042: lipid catabolic process	3.82E-03
78	GO:0010190: cytochrome b6f complex assembly	4.47E-03
79	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	4.47E-03
80	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.47E-03
81	GO:0000741: karyogamy	4.47E-03
82	GO:0006563: L-serine metabolic process	4.47E-03
83	GO:0010405: arabinogalactan protein metabolic process	4.47E-03
84	GO:0006751: glutathione catabolic process	4.47E-03
85	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.47E-03
86	GO:0009959: negative gravitropism	4.47E-03
87	GO:0000470: maturation of LSU-rRNA	4.47E-03
88	GO:0006662: glycerol ether metabolic process	4.52E-03
89	GO:0010197: polar nucleus fusion	4.52E-03
90	GO:0019252: starch biosynthetic process	5.21E-03
91	GO:0009851: auxin biosynthetic process	5.21E-03
92	GO:0042372: phylloquinone biosynthetic process	5.38E-03
93	GO:0042026: protein refolding	5.38E-03
94	GO:0006458: 'de novo' protein folding	5.38E-03
95	GO:0048280: vesicle fusion with Golgi apparatus	5.38E-03
96	GO:1901259: chloroplast rRNA processing	5.38E-03
97	GO:0030488: tRNA methylation	5.38E-03
98	GO:0080086: stamen filament development	5.38E-03
99	GO:0010444: guard mother cell differentiation	6.36E-03
100	GO:1901657: glycosyl compound metabolic process	6.36E-03
101	GO:0010161: red light signaling pathway	6.36E-03
102	GO:0009772: photosynthetic electron transport in photosystem II	6.36E-03
103	GO:0009742: brassinosteroid mediated signaling pathway	7.29E-03
104	GO:0005978: glycogen biosynthetic process	7.40E-03
105	GO:0006605: protein targeting	7.40E-03
106	GO:0046620: regulation of organ growth	7.40E-03
107	GO:0006353: DNA-templated transcription, termination	7.40E-03
108	GO:0010078: maintenance of root meristem identity	7.40E-03
109	GO:0070413: trehalose metabolism in response to stress	7.40E-03
110	GO:0009231: riboflavin biosynthetic process	7.40E-03
111	GO:0009657: plastid organization	8.49E-03
112	GO:0010100: negative regulation of photomorphogenesis	8.49E-03
113	GO:0043562: cellular response to nitrogen levels	8.49E-03
114	GO:0010099: regulation of photomorphogenesis	8.49E-03
115	GO:0071482: cellular response to light stimulus	8.49E-03
116	GO:0009607: response to biotic stimulus	8.56E-03
117	GO:0009409: response to cold	8.76E-03
118	GO:0010206: photosystem II repair	9.65E-03
119	GO:0046916: cellular transition metal ion homeostasis	9.65E-03
120	GO:0046685: response to arsenic-containing substance	9.65E-03
121	GO:0009638: phototropism	1.09E-02
122	GO:0043067: regulation of programmed cell death	1.09E-02
123	GO:0009790: embryo development	1.10E-02
124	GO:0009416: response to light stimulus	1.10E-02
125	GO:0005975: carbohydrate metabolic process	1.12E-02
126	GO:0006896: Golgi to vacuole transport	1.21E-02
127	GO:0006782: protoporphyrinogen IX biosynthetic process	1.21E-02
128	GO:0045036: protein targeting to chloroplast	1.21E-02
129	GO:0009641: shade avoidance	1.21E-02
130	GO:0006949: syncytium formation	1.21E-02
131	GO:0040008: regulation of growth	1.28E-02
132	GO:0019684: photosynthesis, light reaction	1.34E-02
133	GO:0009073: aromatic amino acid family biosynthetic process	1.34E-02
134	GO:0006415: translational termination	1.34E-02
135	GO:0048229: gametophyte development	1.34E-02
136	GO:0009684: indoleacetic acid biosynthetic process	1.34E-02
137	GO:0000038: very long-chain fatty acid metabolic process	1.34E-02
138	GO:0007623: circadian rhythm	1.36E-02
139	GO:0034599: cellular response to oxidative stress	1.41E-02
140	GO:0016024: CDP-diacylglycerol biosynthetic process	1.48E-02
141	GO:0006631: fatty acid metabolic process	1.60E-02
142	GO:0010588: cotyledon vascular tissue pattern formation	1.62E-02
143	GO:0010628: positive regulation of gene expression	1.62E-02
144	GO:0010102: lateral root morphogenesis	1.62E-02
145	GO:0050826: response to freezing	1.62E-02
146	GO:0010075: regulation of meristem growth	1.62E-02
147	GO:0048467: gynoecium development	1.76E-02
148	GO:0010143: cutin biosynthetic process	1.76E-02
149	GO:0010207: photosystem II assembly	1.76E-02
150	GO:0010020: chloroplast fission	1.76E-02
151	GO:0009266: response to temperature stimulus	1.76E-02
152	GO:0009934: regulation of meristem structural organization	1.76E-02
153	GO:0019853: L-ascorbic acid biosynthetic process	1.91E-02
154	GO:0010030: positive regulation of seed germination	1.91E-02
155	GO:0006855: drug transmembrane transport	2.03E-02
156	GO:0010187: negative regulation of seed germination	2.22E-02
157	GO:0005992: trehalose biosynthetic process	2.22E-02
158	GO:0009768: photosynthesis, light harvesting in photosystem I	2.38E-02
159	GO:0009734: auxin-activated signaling pathway	2.45E-02
160	GO:0048511: rhythmic process	2.55E-02
161	GO:0016226: iron-sulfur cluster assembly	2.72E-02
162	GO:0006730: one-carbon metabolic process	2.72E-02
163	GO:0030245: cellulose catabolic process	2.72E-02
164	GO:0048367: shoot system development	2.86E-02
165	GO:0009686: gibberellin biosynthetic process	2.89E-02
166	GO:0006012: galactose metabolic process	2.89E-02
167	GO:0080167: response to karrikin	3.10E-02
168	GO:0006412: translation	3.18E-02
169	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.25E-02
170	GO:0042147: retrograde transport, endosome to Golgi	3.25E-02
171	GO:0016117: carotenoid biosynthetic process	3.25E-02
172	GO:0042335: cuticle development	3.44E-02
173	GO:0080022: primary root development	3.44E-02
174	GO:0000413: protein peptidyl-prolyl isomerization	3.44E-02
175	GO:0010087: phloem or xylem histogenesis	3.44E-02
176	GO:0048653: anther development	3.44E-02
177	GO:0042631: cellular response to water deprivation	3.44E-02
178	GO:0009958: positive gravitropism	3.63E-02
179	GO:0010182: sugar mediated signaling pathway	3.63E-02
180	GO:0048544: recognition of pollen	3.82E-02
181	GO:0042752: regulation of circadian rhythm	3.82E-02
182	GO:0009646: response to absence of light	3.82E-02
183	GO:0045454: cell redox homeostasis	3.87E-02
184	GO:0006623: protein targeting to vacuole	4.01E-02
185	GO:0048825: cotyledon development	4.01E-02
186	GO:0009556: microsporogenesis	4.01E-02
187	GO:0006891: intra-Golgi vesicle-mediated transport	4.21E-02
188	GO:0009733: response to auxin	4.38E-02
189	GO:0010583: response to cyclopentenone	4.41E-02
190	GO:0032502: developmental process	4.41E-02
191	GO:0010090: trichome morphogenesis	4.62E-02
192	GO:0009828: plant-type cell wall loosening	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0005363: maltose transmembrane transporter activity	0.00E+00
4	GO:0090711: FMN hydrolase activity	0.00E+00
5	GO:0010303: limit dextrinase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0030378: serine racemase activity	0.00E+00
10	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
11	GO:0051060: pullulanase activity	0.00E+00
12	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
13	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
14	GO:0004823: leucine-tRNA ligase activity	0.00E+00
15	GO:0005201: extracellular matrix structural constituent	0.00E+00
16	GO:0004076: biotin synthase activity	0.00E+00
17	GO:0045430: chalcone isomerase activity	1.00E-06
18	GO:0005504: fatty acid binding	2.63E-05
19	GO:0002161: aminoacyl-tRNA editing activity	2.63E-05
20	GO:0019843: rRNA binding	5.17E-05
21	GO:0008184: glycogen phosphorylase activity	4.13E-04
22	GO:0004856: xylulokinase activity	4.13E-04
23	GO:0004134: 4-alpha-glucanotransferase activity	4.13E-04
24	GO:0050308: sugar-phosphatase activity	4.13E-04
25	GO:0004645: phosphorylase activity	4.13E-04
26	GO:0019203: carbohydrate phosphatase activity	4.13E-04
27	GO:0004853: uroporphyrinogen decarboxylase activity	4.13E-04
28	GO:0042586: peptide deformylase activity	4.13E-04
29	GO:0005080: protein kinase C binding	4.13E-04
30	GO:0010313: phytochrome binding	4.13E-04
31	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.13E-04
32	GO:0050139: nicotinate-N-glucosyltransferase activity	4.13E-04
33	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.13E-04
34	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.93E-04
35	GO:0003919: FMN adenylyltransferase activity	8.93E-04
36	GO:0016630: protochlorophyllide reductase activity	8.93E-04
37	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	8.93E-04
38	GO:0004614: phosphoglucomutase activity	8.93E-04
39	GO:0030385: ferredoxin:thioredoxin reductase activity	8.93E-04
40	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	8.93E-04
41	GO:0003839: gamma-glutamylcyclotransferase activity	8.93E-04
42	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.93E-04
43	GO:0004617: phosphoglycerate dehydrogenase activity	8.93E-04
44	GO:0004817: cysteine-tRNA ligase activity	8.93E-04
45	GO:0016992: lipoate synthase activity	1.45E-03
46	GO:0004148: dihydrolipoyl dehydrogenase activity	1.45E-03
47	GO:0004075: biotin carboxylase activity	1.45E-03
48	GO:0004751: ribose-5-phosphate isomerase activity	1.45E-03
49	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.45E-03
50	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.45E-03
51	GO:0008266: poly(U) RNA binding	1.64E-03
52	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.10E-03
53	GO:0003999: adenine phosphoribosyltransferase activity	2.10E-03
54	GO:0016149: translation release factor activity, codon specific	2.10E-03
55	GO:0016851: magnesium chelatase activity	2.10E-03
56	GO:0043023: ribosomal large subunit binding	2.10E-03
57	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	2.10E-03
58	GO:0005528: FK506 binding	2.27E-03
59	GO:0004659: prenyltransferase activity	2.82E-03
60	GO:0016279: protein-lysine N-methyltransferase activity	2.82E-03
61	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.82E-03
62	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.59E-03
63	GO:0016846: carbon-sulfur lyase activity	3.61E-03
64	GO:0003959: NADPH dehydrogenase activity	3.61E-03
65	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.61E-03
66	GO:0003989: acetyl-CoA carboxylase activity	3.61E-03
67	GO:0047134: protein-disulfide reductase activity	3.87E-03
68	GO:0004812: aminoacyl-tRNA ligase activity	3.87E-03
69	GO:0004629: phospholipase C activity	4.47E-03
70	GO:0004556: alpha-amylase activity	4.47E-03
71	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.47E-03
72	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.47E-03
73	GO:2001070: starch binding	4.47E-03
74	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.47E-03
75	GO:0004791: thioredoxin-disulfide reductase activity	4.85E-03
76	GO:0004435: phosphatidylinositol phospholipase C activity	5.38E-03
77	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.38E-03
78	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.36E-03
79	GO:0016791: phosphatase activity	6.77E-03
80	GO:0008237: metallopeptidase activity	7.19E-03
81	GO:0004033: aldo-keto reductase (NADP) activity	7.40E-03
82	GO:0016597: amino acid binding	7.63E-03
83	GO:0046914: transition metal ion binding	8.49E-03
84	GO:0008173: RNA methyltransferase activity	8.49E-03
85	GO:0102483: scopolin beta-glucosidase activity	9.54E-03
86	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	9.65E-03
87	GO:0003747: translation release factor activity	9.65E-03
88	GO:0003723: RNA binding	9.77E-03
89	GO:0004252: serine-type endopeptidase activity	1.03E-02
90	GO:0015238: drug transmembrane transporter activity	1.11E-02
91	GO:0004222: metalloendopeptidase activity	1.17E-02
92	GO:0008559: xenobiotic-transporting ATPase activity	1.34E-02
93	GO:0044183: protein binding involved in protein folding	1.34E-02
94	GO:0047372: acylglycerol lipase activity	1.34E-02
95	GO:0008422: beta-glucosidase activity	1.47E-02
96	GO:0000049: tRNA binding	1.48E-02
97	GO:0051539: 4 iron, 4 sulfur cluster binding	1.53E-02
98	GO:0003725: double-stranded RNA binding	1.62E-02
99	GO:0004022: alcohol dehydrogenase (NAD) activity	1.62E-02
100	GO:0004089: carbonate dehydratase activity	1.62E-02
101	GO:0019888: protein phosphatase regulator activity	1.62E-02
102	GO:0035091: phosphatidylinositol binding	1.88E-02
103	GO:0008146: sulfotransferase activity	1.91E-02
104	GO:0003735: structural constituent of ribosome	1.98E-02
105	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.06E-02
106	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.06E-02
107	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.06E-02
108	GO:0031409: pigment binding	2.06E-02
109	GO:0051536: iron-sulfur cluster binding	2.22E-02
110	GO:0000287: magnesium ion binding	2.31E-02
111	GO:0043424: protein histidine kinase binding	2.38E-02
112	GO:0016788: hydrolase activity, acting on ester bonds	2.42E-02
113	GO:0004176: ATP-dependent peptidase activity	2.55E-02
114	GO:0033612: receptor serine/threonine kinase binding	2.55E-02
115	GO:0008810: cellulase activity	2.89E-02
116	GO:0003727: single-stranded RNA binding	3.07E-02
117	GO:0015035: protein disulfide oxidoreductase activity	3.44E-02
118	GO:0052689: carboxylic ester hydrolase activity	3.51E-02
119	GO:0001085: RNA polymerase II transcription factor binding	3.63E-02
120	GO:0003713: transcription coactivator activity	3.63E-02
121	GO:0048038: quinone binding	4.21E-02
122	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.28E-02
123	GO:0030170: pyridoxal phosphate binding	4.62E-02
124	GO:0000156: phosphorelay response regulator activity	4.62E-02
125	GO:0016759: cellulose synthase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	2.26E-35
3	GO:0009570: chloroplast stroma	1.41E-27
4	GO:0009535: chloroplast thylakoid membrane	4.19E-13
5	GO:0009579: thylakoid	3.65E-12
6	GO:0009534: chloroplast thylakoid	4.68E-11
7	GO:0009941: chloroplast envelope	8.83E-11
8	GO:0009543: chloroplast thylakoid lumen	3.58E-07
9	GO:0031977: thylakoid lumen	3.47E-06
10	GO:0031969: chloroplast membrane	1.38E-05
11	GO:0009547: plastid ribosome	4.13E-04
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.09E-04
13	GO:0010007: magnesium chelatase complex	1.45E-03
14	GO:0005960: glycine cleavage complex	2.10E-03
15	GO:0009536: plastid	2.48E-03
16	GO:0009654: photosystem II oxygen evolving complex	2.50E-03
17	GO:0019898: extrinsic component of membrane	5.21E-03
18	GO:0009840: chloroplastic endopeptidase Clp complex	5.38E-03
19	GO:0009533: chloroplast stromal thylakoid	6.36E-03
20	GO:0009706: chloroplast inner membrane	6.77E-03
21	GO:0010319: stromule	7.19E-03
22	GO:0012507: ER to Golgi transport vesicle membrane	7.40E-03
23	GO:0009501: amyloplast	7.40E-03
24	GO:0005763: mitochondrial small ribosomal subunit	9.65E-03
25	GO:0009707: chloroplast outer membrane	1.06E-02
26	GO:0000159: protein phosphatase type 2A complex	1.34E-02
27	GO:0005840: ribosome	1.44E-02
28	GO:0000311: plastid large ribosomal subunit	1.48E-02
29	GO:0030076: light-harvesting complex	1.91E-02
30	GO:0046658: anchored component of plasma membrane	1.94E-02
31	GO:0015935: small ribosomal subunit	2.55E-02
32	GO:0009532: plastid stroma	2.55E-02