Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G64460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905157: positive regulation of photosynthesis0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:0015979: photosynthesis2.40E-11
8GO:0009773: photosynthetic electron transport in photosystem I1.77E-08
9GO:0010207: photosystem II assembly3.12E-06
10GO:0015995: chlorophyll biosynthetic process8.07E-06
11GO:0032544: plastid translation1.69E-05
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.34E-05
13GO:0071484: cellular response to light intensity4.34E-05
14GO:0010190: cytochrome b6f complex assembly1.74E-04
15GO:0009768: photosynthesis, light harvesting in photosystem I1.78E-04
16GO:0006810: transport2.25E-04
17GO:1901259: chloroplast rRNA processing2.36E-04
18GO:0010114: response to red light3.33E-04
19GO:0042371: vitamin K biosynthetic process3.52E-04
20GO:0080093: regulation of photorespiration3.52E-04
21GO:0031998: regulation of fatty acid beta-oxidation3.52E-04
22GO:0034337: RNA folding3.52E-04
23GO:0000476: maturation of 4.5S rRNA3.52E-04
24GO:0000967: rRNA 5'-end processing3.52E-04
25GO:0046467: membrane lipid biosynthetic process3.52E-04
26GO:0015671: oxygen transport3.52E-04
27GO:1904966: positive regulation of vitamin E biosynthetic process3.52E-04
28GO:0071277: cellular response to calcium ion3.52E-04
29GO:0019544: arginine catabolic process to glutamate3.52E-04
30GO:1904964: positive regulation of phytol biosynthetic process3.52E-04
31GO:0009657: plastid organization4.70E-04
32GO:0055114: oxidation-reduction process4.77E-04
33GO:0006098: pentose-phosphate shunt5.65E-04
34GO:0006779: porphyrin-containing compound biosynthetic process6.66E-04
35GO:0034470: ncRNA processing7.67E-04
36GO:0080029: cellular response to boron-containing substance levels7.67E-04
37GO:1902326: positive regulation of chlorophyll biosynthetic process7.67E-04
38GO:0006898: receptor-mediated endocytosis7.67E-04
39GO:0010541: acropetal auxin transport7.67E-04
40GO:0071457: cellular response to ozone7.67E-04
41GO:0006782: protoporphyrinogen IX biosynthetic process7.77E-04
42GO:0005975: carbohydrate metabolic process7.91E-04
43GO:0043085: positive regulation of catalytic activity8.95E-04
44GO:0006094: gluconeogenesis1.16E-03
45GO:0009767: photosynthetic electron transport chain1.16E-03
46GO:0018298: protein-chromophore linkage1.17E-03
47GO:0005977: glycogen metabolic process1.24E-03
48GO:0090391: granum assembly1.24E-03
49GO:0010160: formation of animal organ boundary1.24E-03
50GO:0010143: cutin biosynthetic process1.30E-03
51GO:0010218: response to far red light1.32E-03
52GO:0009637: response to blue light1.58E-03
53GO:0009853: photorespiration1.58E-03
54GO:0034599: cellular response to oxidative stress1.67E-03
55GO:0046713: borate transport1.79E-03
56GO:1902358: sulfate transmembrane transport1.79E-03
57GO:0006166: purine ribonucleoside salvage1.79E-03
58GO:0006020: inositol metabolic process1.79E-03
59GO:0009152: purine ribonucleotide biosynthetic process1.79E-03
60GO:0046653: tetrahydrofolate metabolic process1.79E-03
61GO:0043481: anthocyanin accumulation in tissues in response to UV light1.79E-03
62GO:0009052: pentose-phosphate shunt, non-oxidative branch1.79E-03
63GO:0006168: adenine salvage1.79E-03
64GO:0010037: response to carbon dioxide2.40E-03
65GO:0015976: carbon utilization2.40E-03
66GO:0071486: cellular response to high light intensity2.40E-03
67GO:0009765: photosynthesis, light harvesting2.40E-03
68GO:0045727: positive regulation of translation2.40E-03
69GO:0015994: chlorophyll metabolic process2.40E-03
70GO:2000122: negative regulation of stomatal complex development2.40E-03
71GO:0006546: glycine catabolic process2.40E-03
72GO:0006021: inositol biosynthetic process2.40E-03
73GO:0071483: cellular response to blue light2.40E-03
74GO:0010021: amylopectin biosynthetic process2.40E-03
75GO:0006097: glyoxylate cycle3.07E-03
76GO:0044209: AMP salvage3.07E-03
77GO:0006465: signal peptide processing3.07E-03
78GO:0071493: cellular response to UV-B3.07E-03
79GO:0006564: L-serine biosynthetic process3.07E-03
80GO:0009904: chloroplast accumulation movement3.07E-03
81GO:0006364: rRNA processing3.19E-03
82GO:0042631: cellular response to water deprivation3.31E-03
83GO:0009958: positive gravitropism3.57E-03
84GO:0006662: glycerol ether metabolic process3.57E-03
85GO:0042549: photosystem II stabilization3.79E-03
86GO:0060918: auxin transport3.79E-03
87GO:1902456: regulation of stomatal opening3.79E-03
88GO:0046855: inositol phosphate dephosphorylation3.79E-03
89GO:0009643: photosynthetic acclimation3.79E-03
90GO:0006096: glycolytic process3.95E-03
91GO:0019252: starch biosynthetic process4.11E-03
92GO:0009854: oxidative photosynthetic carbon pathway4.57E-03
93GO:0009955: adaxial/abaxial pattern specification4.57E-03
94GO:0071333: cellular response to glucose stimulus4.57E-03
95GO:0009903: chloroplast avoidance movement4.57E-03
96GO:0032502: developmental process4.70E-03
97GO:1901657: glycosyl compound metabolic process5.01E-03
98GO:0009772: photosynthetic electron transport in photosystem II5.40E-03
99GO:0008272: sulfate transport5.40E-03
100GO:0009769: photosynthesis, light harvesting in photosystem II5.40E-03
101GO:0009645: response to low light intensity stimulus5.40E-03
102GO:0009735: response to cytokinin6.19E-03
103GO:0016559: peroxisome fission6.27E-03
104GO:0048564: photosystem I assembly6.27E-03
105GO:0009642: response to light intensity6.27E-03
106GO:0042255: ribosome assembly6.27E-03
107GO:0006353: DNA-templated transcription, termination6.27E-03
108GO:0010078: maintenance of root meristem identity6.27E-03
109GO:0009704: de-etiolation6.27E-03
110GO:0043562: cellular response to nitrogen levels7.19E-03
111GO:0071482: cellular response to light stimulus7.19E-03
112GO:0019430: removal of superoxide radicals7.19E-03
113GO:0009416: response to light stimulus7.24E-03
114GO:0009821: alkaloid biosynthetic process8.16E-03
115GO:0010206: photosystem II repair8.16E-03
116GO:0019432: triglyceride biosynthetic process8.16E-03
117GO:0090333: regulation of stomatal closure8.16E-03
118GO:0006783: heme biosynthetic process8.16E-03
119GO:0005982: starch metabolic process9.17E-03
120GO:0048527: lateral root development9.64E-03
121GO:0009641: shade avoidance1.02E-02
122GO:0006949: syncytium formation1.02E-02
123GO:0009684: indoleacetic acid biosynthetic process1.13E-02
124GO:0019684: photosynthesis, light reaction1.13E-02
125GO:0006415: translational termination1.13E-02
126GO:0000272: polysaccharide catabolic process1.13E-02
127GO:0018119: peptidyl-cysteine S-nitrosylation1.13E-02
128GO:0008361: regulation of cell size1.25E-02
129GO:0006790: sulfur compound metabolic process1.25E-02
130GO:0016024: CDP-diacylglycerol biosynthetic process1.25E-02
131GO:0010588: cotyledon vascular tissue pattern formation1.37E-02
132GO:0030048: actin filament-based movement1.37E-02
133GO:0006108: malate metabolic process1.37E-02
134GO:0006006: glucose metabolic process1.37E-02
135GO:0010223: secondary shoot formation1.49E-02
136GO:0009409: response to cold1.49E-02
137GO:0010540: basipetal auxin transport1.49E-02
138GO:0048467: gynoecium development1.49E-02
139GO:0010020: chloroplast fission1.49E-02
140GO:0019253: reductive pentose-phosphate cycle1.49E-02
141GO:0007015: actin filament organization1.49E-02
142GO:0046854: phosphatidylinositol phosphorylation1.61E-02
143GO:0019762: glucosinolate catabolic process1.74E-02
144GO:0006636: unsaturated fatty acid biosynthetic process1.74E-02
145GO:0009658: chloroplast organization1.75E-02
146GO:0051603: proteolysis involved in cellular protein catabolic process1.91E-02
147GO:0019915: lipid storage2.15E-02
148GO:0009269: response to desiccation2.15E-02
149GO:0019748: secondary metabolic process2.29E-02
150GO:0030245: cellulose catabolic process2.29E-02
151GO:0016226: iron-sulfur cluster assembly2.29E-02
152GO:0030433: ubiquitin-dependent ERAD pathway2.29E-02
153GO:0080167: response to karrikin2.30E-02
154GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.44E-02
155GO:0071215: cellular response to abscisic acid stimulus2.44E-02
156GO:0048443: stamen development2.59E-02
157GO:0009306: protein secretion2.59E-02
158GO:0016117: carotenoid biosynthetic process2.74E-02
159GO:0010087: phloem or xylem histogenesis2.90E-02
160GO:0010118: stomatal movement2.90E-02
161GO:0080022: primary root development2.90E-02
162GO:0006520: cellular amino acid metabolic process3.06E-02
163GO:0071472: cellular response to salt stress3.06E-02
164GO:0015986: ATP synthesis coupled proton transport3.22E-02
165GO:0009851: auxin biosynthetic process3.39E-02
166GO:0048825: cotyledon development3.39E-02
167GO:0009058: biosynthetic process3.47E-02
168GO:0032259: methylation3.54E-02
169GO:0071554: cell wall organization or biogenesis3.55E-02
170GO:0010193: response to ozone3.55E-02
171GO:0009828: plant-type cell wall loosening4.07E-02
172GO:0009639: response to red or far red light4.07E-02
173GO:0007623: circadian rhythm4.53E-02
174GO:0010027: thylakoid membrane organization4.62E-02
175GO:0042128: nitrate assimilation4.99E-02
RankGO TermAdjusted P value
1GO:0008465: glycerate dehydrogenase activity0.00E+00
2GO:0046408: chlorophyll synthetase activity0.00E+00
3GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
4GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
5GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
6GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
7GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
8GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
9GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
10GO:0019843: rRNA binding2.28E-06
11GO:0016851: magnesium chelatase activity4.34E-05
12GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.72E-05
13GO:0016168: chlorophyll binding9.93E-05
14GO:0031409: pigment binding1.32E-04
15GO:0004332: fructose-bisphosphate aldolase activity1.74E-04
16GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.36E-04
17GO:0005344: oxygen transporter activity3.52E-04
18GO:0035671: enone reductase activity3.52E-04
19GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.52E-04
20GO:0004856: xylulokinase activity3.52E-04
21GO:0015168: glycerol transmembrane transporter activity3.52E-04
22GO:0008883: glutamyl-tRNA reductase activity7.67E-04
23GO:0047746: chlorophyllase activity7.67E-04
24GO:0010297: heteropolysaccharide binding7.67E-04
25GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.67E-04
26GO:0004617: phosphoglycerate dehydrogenase activity7.67E-04
27GO:0004047: aminomethyltransferase activity7.67E-04
28GO:0052832: inositol monophosphate 3-phosphatase activity7.67E-04
29GO:0033201: alpha-1,4-glucan synthase activity7.67E-04
30GO:0018708: thiol S-methyltransferase activity7.67E-04
31GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.67E-04
32GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.67E-04
33GO:0008934: inositol monophosphate 1-phosphatase activity7.67E-04
34GO:0052833: inositol monophosphate 4-phosphatase activity7.67E-04
35GO:0019156: isoamylase activity7.67E-04
36GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.67E-04
37GO:0008047: enzyme activator activity7.77E-04
38GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.24E-03
39GO:0008864: formyltetrahydrofolate deformylase activity1.24E-03
40GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.24E-03
41GO:0004373: glycogen (starch) synthase activity1.24E-03
42GO:0050734: hydroxycinnamoyltransferase activity1.24E-03
43GO:0004751: ribose-5-phosphate isomerase activity1.24E-03
44GO:0008266: poly(U) RNA binding1.30E-03
45GO:0003999: adenine phosphoribosyltransferase activity1.79E-03
46GO:0016149: translation release factor activity, codon specific1.79E-03
47GO:0022890: inorganic cation transmembrane transporter activity1.79E-03
48GO:0046715: borate transmembrane transporter activity1.79E-03
49GO:0004185: serine-type carboxypeptidase activity2.18E-03
50GO:0015204: urea transmembrane transporter activity2.40E-03
51GO:0008453: alanine-glyoxylate transaminase activity2.40E-03
52GO:0045430: chalcone isomerase activity2.40E-03
53GO:0009011: starch synthase activity2.40E-03
54GO:0043495: protein anchor2.40E-03
55GO:0051287: NAD binding2.78E-03
56GO:0003727: single-stranded RNA binding2.82E-03
57GO:0042802: identical protein binding3.02E-03
58GO:0047134: protein-disulfide reductase activity3.06E-03
59GO:0016846: carbon-sulfur lyase activity3.07E-03
60GO:0016773: phosphotransferase activity, alcohol group as acceptor3.07E-03
61GO:0016615: malate dehydrogenase activity3.79E-03
62GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.79E-03
63GO:0004556: alpha-amylase activity3.79E-03
64GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.79E-03
65GO:0004784: superoxide dismutase activity3.79E-03
66GO:0004791: thioredoxin-disulfide reductase activity3.83E-03
67GO:0048038: quinone binding4.40E-03
68GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.57E-03
69GO:0030060: L-malate dehydrogenase activity4.57E-03
70GO:0016491: oxidoreductase activity4.93E-03
71GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.01E-03
72GO:0019899: enzyme binding5.40E-03
73GO:0005509: calcium ion binding7.09E-03
74GO:0008271: secondary active sulfate transmembrane transporter activity7.19E-03
75GO:0102483: scopolin beta-glucosidase activity7.51E-03
76GO:0003747: translation release factor activity8.16E-03
77GO:0016844: strictosidine synthase activity9.17E-03
78GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.17E-03
79GO:0047372: acylglycerol lipase activity1.13E-02
80GO:0015386: potassium:proton antiporter activity1.13E-02
81GO:0008422: beta-glucosidase activity1.16E-02
82GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.17E-02
83GO:0050661: NADP binding1.21E-02
84GO:0015116: sulfate transmembrane transporter activity1.25E-02
85GO:0004089: carbonate dehydratase activity1.37E-02
86GO:0031072: heat shock protein binding1.37E-02
87GO:0003725: double-stranded RNA binding1.37E-02
88GO:0004565: beta-galactosidase activity1.37E-02
89GO:0010329: auxin efflux transmembrane transporter activity1.37E-02
90GO:0004022: alcohol dehydrogenase (NAD) activity1.37E-02
91GO:0051537: 2 iron, 2 sulfur cluster binding1.48E-02
92GO:0003774: motor activity1.49E-02
93GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.49E-02
94GO:0008168: methyltransferase activity1.67E-02
95GO:0051536: iron-sulfur cluster binding1.88E-02
96GO:0005528: FK506 binding1.88E-02
97GO:0015079: potassium ion transmembrane transporter activity2.01E-02
98GO:0022891: substrate-specific transmembrane transporter activity2.44E-02
99GO:0008810: cellulase activity2.44E-02
100GO:0015035: protein disulfide oxidoreductase activity2.71E-02
101GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.06E-02
102GO:0003735: structural constituent of ribosome3.08E-02
103GO:0016853: isomerase activity3.22E-02
104GO:0015299: solute:proton antiporter activity3.22E-02
105GO:0050662: coenzyme binding3.22E-02
106GO:0016791: phosphatase activity4.07E-02
107GO:0009055: electron carrier activity4.07E-02
108GO:0008483: transaminase activity4.25E-02
109GO:0016413: O-acetyltransferase activity4.43E-02
110GO:0016597: amino acid binding4.43E-02
111GO:0015250: water channel activity4.62E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0009507: chloroplast6.38E-45
5GO:0009535: chloroplast thylakoid membrane2.46E-31
6GO:0009534: chloroplast thylakoid2.87E-20
7GO:0009579: thylakoid4.93E-19
8GO:0009543: chloroplast thylakoid lumen5.56E-16
9GO:0009941: chloroplast envelope1.56E-14
10GO:0009570: chloroplast stroma9.46E-14
11GO:0009654: photosystem II oxygen evolving complex5.37E-11
12GO:0031977: thylakoid lumen8.49E-11
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.93E-09
14GO:0019898: extrinsic component of membrane4.67E-08
15GO:0030095: chloroplast photosystem II5.78E-08
16GO:0010287: plastoglobule1.89E-06
17GO:0010007: magnesium chelatase complex1.97E-05
18GO:0030076: light-harvesting complex1.12E-04
19GO:0031969: chloroplast membrane2.97E-04
20GO:0009547: plastid ribosome3.52E-04
21GO:0005787: signal peptidase complex3.52E-04
22GO:0048046: apoplast4.38E-04
23GO:0009522: photosystem I4.41E-04
24GO:0009523: photosystem II4.83E-04
25GO:0010319: stromule7.28E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex7.67E-04
27GO:0005840: ribosome9.61E-04
28GO:0033281: TAT protein transport complex1.24E-03
29GO:0042651: thylakoid membrane1.98E-03
30GO:0009517: PSII associated light-harvesting complex II2.40E-03
31GO:0005777: peroxisome2.72E-03
32GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.79E-03
33GO:0009501: amyloplast6.27E-03
34GO:0031982: vesicle6.27E-03
35GO:0009539: photosystem II reaction center7.19E-03
36GO:0005763: mitochondrial small ribosomal subunit8.16E-03
37GO:0016459: myosin complex1.02E-02
38GO:0000311: plastid large ribosomal subunit1.25E-02
39GO:0032040: small-subunit processome1.25E-02
40GO:0009508: plastid chromosome1.37E-02
41GO:0043234: protein complex1.74E-02
42GO:0015935: small ribosomal subunit2.15E-02
43GO:0005623: cell3.38E-02
44GO:0009295: nucleoid4.25E-02
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Gene type



Gene DE type