co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0015995: chlorophyll biosynthetic process	5.08E-09
4	GO:0009773: photosynthetic electron transport in photosystem I	6.24E-08
5	GO:0006094: gluconeogenesis	1.20E-07
6	GO:0006636: unsaturated fatty acid biosynthetic process	2.78E-07
7	GO:0015979: photosynthesis	1.08E-06
8	GO:0006021: inositol biosynthetic process	1.59E-05
9	GO:0006633: fatty acid biosynthetic process	2.10E-05
10	GO:0055114: oxidation-reduction process	3.95E-05
11	GO:0006096: glycolytic process	7.60E-05
12	GO:0071277: cellular response to calcium ion	1.40E-04
13	GO:0000023: maltose metabolic process	1.40E-04
14	GO:0000025: maltose catabolic process	1.40E-04
15	GO:0005980: glycogen catabolic process	1.40E-04
16	GO:0006098: pentose-phosphate shunt	1.47E-04
17	GO:0005983: starch catabolic process	2.81E-04
18	GO:0005976: polysaccharide metabolic process	3.20E-04
19	GO:0010353: response to trehalose	3.20E-04
20	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.20E-04
21	GO:0080029: cellular response to boron-containing substance levels	3.20E-04
22	GO:0019253: reductive pentose-phosphate cycle	3.63E-04
23	GO:0010143: cutin biosynthetic process	3.63E-04
24	GO:0090391: granum assembly	5.26E-04
25	GO:0006518: peptide metabolic process	5.26E-04
26	GO:0006081: cellular aldehyde metabolic process	5.26E-04
27	GO:0006000: fructose metabolic process	5.26E-04
28	GO:0046713: borate transport	7.53E-04
29	GO:1902358: sulfate transmembrane transport	7.53E-04
30	GO:0071484: cellular response to light intensity	7.53E-04
31	GO:0010021: amylopectin biosynthetic process	9.98E-04
32	GO:0019252: starch biosynthetic process	1.12E-03
33	GO:0008654: phospholipid biosynthetic process	1.12E-03
34	GO:0010117: photoprotection	1.26E-03
35	GO:0032259: methylation	1.26E-03
36	GO:0009972: cytidine deamination	1.55E-03
37	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.55E-03
38	GO:0051607: defense response to virus	1.62E-03
39	GO:0010189: vitamin E biosynthetic process	1.86E-03
40	GO:0008272: sulfate transport	2.18E-03
41	GO:0009610: response to symbiotic fungus	2.18E-03
42	GO:0009395: phospholipid catabolic process	2.18E-03
43	GO:0009772: photosynthetic electron transport in photosystem II	2.18E-03
44	GO:0010196: nonphotochemical quenching	2.18E-03
45	GO:0030091: protein repair	2.52E-03
46	GO:0009704: de-etiolation	2.52E-03
47	GO:0019827: stem cell population maintenance	2.52E-03
48	GO:0008610: lipid biosynthetic process	2.52E-03
49	GO:0005978: glycogen biosynthetic process	2.52E-03
50	GO:0009642: response to light intensity	2.52E-03
51	GO:0009631: cold acclimation	2.56E-03
52	GO:2000031: regulation of salicylic acid mediated signaling pathway	2.88E-03
53	GO:0006002: fructose 6-phosphate metabolic process	2.88E-03
54	GO:0010206: photosystem II repair	3.26E-03
55	GO:0090333: regulation of stomatal closure	3.26E-03
56	GO:0006783: heme biosynthetic process	3.26E-03
57	GO:0006754: ATP biosynthetic process	3.26E-03
58	GO:0009051: pentose-phosphate shunt, oxidative branch	3.26E-03
59	GO:0006631: fatty acid metabolic process	3.33E-03
60	GO:0010114: response to red light	3.61E-03
61	GO:0005982: starch metabolic process	3.65E-03
62	GO:0010205: photoinhibition	3.65E-03
63	GO:0006779: porphyrin-containing compound biosynthetic process	3.65E-03
64	GO:0009644: response to high light intensity	3.90E-03
65	GO:0009641: shade avoidance	4.06E-03
66	GO:0006782: protoporphyrinogen IX biosynthetic process	4.06E-03
67	GO:0043085: positive regulation of catalytic activity	4.48E-03
68	GO:0000038: very long-chain fatty acid metabolic process	4.48E-03
69	GO:0002213: defense response to insect	4.92E-03
70	GO:0006857: oligopeptide transport	5.19E-03
71	GO:0006006: glucose metabolic process	5.37E-03
72	GO:0009725: response to hormone	5.37E-03
73	GO:0005986: sucrose biosynthetic process	5.37E-03
74	GO:0010207: photosystem II assembly	5.84E-03
75	GO:0010223: secondary shoot formation	5.84E-03
76	GO:0009266: response to temperature stimulus	5.84E-03
77	GO:0005985: sucrose metabolic process	6.32E-03
78	GO:0010025: wax biosynthetic process	6.81E-03
79	GO:0007017: microtubule-based process	7.84E-03
80	GO:0009695: jasmonic acid biosynthetic process	7.84E-03
81	GO:0009768: photosynthesis, light harvesting in photosystem I	7.84E-03
82	GO:0016998: cell wall macromolecule catabolic process	8.38E-03
83	GO:0061077: chaperone-mediated protein folding	8.38E-03
84	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.92E-03
85	GO:0030433: ubiquitin-dependent ERAD pathway	8.92E-03
86	GO:0070417: cellular response to cold	1.06E-02
87	GO:0016117: carotenoid biosynthetic process	1.06E-02
88	GO:0042335: cuticle development	1.12E-02
89	GO:0006606: protein import into nucleus	1.12E-02
90	GO:0006662: glycerol ether metabolic process	1.18E-02
91	GO:0048868: pollen tube development	1.18E-02
92	GO:0009741: response to brassinosteroid	1.18E-02
93	GO:0015986: ATP synthesis coupled proton transport	1.25E-02
94	GO:0009630: gravitropism	1.44E-02
95	GO:0009409: response to cold	1.48E-02
96	GO:0006810: transport	1.67E-02
97	GO:0010027: thylakoid membrane organization	1.79E-02
98	GO:0046686: response to cadmium ion	1.83E-02
99	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.86E-02
100	GO:0042128: nitrate assimilation	1.93E-02
101	GO:0010411: xyloglucan metabolic process	2.00E-02
102	GO:0016311: dephosphorylation	2.08E-02
103	GO:0018298: protein-chromophore linkage	2.16E-02
104	GO:0010311: lateral root formation	2.23E-02
105	GO:0000160: phosphorelay signal transduction system	2.23E-02
106	GO:0010218: response to far red light	2.31E-02
107	GO:0009637: response to blue light	2.55E-02
108	GO:0034599: cellular response to oxidative stress	2.63E-02
109	GO:0042542: response to hydrogen peroxide	2.97E-02
110	GO:0009744: response to sucrose	3.06E-02
111	GO:0051707: response to other organism	3.06E-02
112	GO:0042546: cell wall biogenesis	3.14E-02
113	GO:0000209: protein polyubiquitination	3.14E-02
114	GO:0009793: embryo development ending in seed dormancy	3.27E-02
115	GO:0016042: lipid catabolic process	3.30E-02
116	GO:0009414: response to water deprivation	3.38E-02
117	GO:0006364: rRNA processing	3.78E-02
118	GO:0009736: cytokinin-activated signaling pathway	3.78E-02
119	GO:0043086: negative regulation of catalytic activity	4.26E-02
120	GO:0042545: cell wall modification	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
3	GO:0045550: geranylgeranyl reductase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
6	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
7	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
8	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
9	GO:0030794: (S)-coclaurine-N-methyltransferase activity	0.00E+00
10	GO:0004332: fructose-bisphosphate aldolase activity	2.64E-07
11	GO:0004512: inositol-3-phosphate synthase activity	9.68E-07
12	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.40E-04
13	GO:0045485: omega-6 fatty acid desaturase activity	1.40E-04
14	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.40E-04
15	GO:0004134: 4-alpha-glucanotransferase activity	1.40E-04
16	GO:0004645: phosphorylase activity	1.40E-04
17	GO:0015168: glycerol transmembrane transporter activity	1.40E-04
18	GO:0035671: enone reductase activity	1.40E-04
19	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.40E-04
20	GO:0050521: alpha-glucan, water dikinase activity	1.40E-04
21	GO:0008184: glycogen phosphorylase activity	1.40E-04
22	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.76E-04
23	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.20E-04
24	GO:0018708: thiol S-methyltransferase activity	3.20E-04
25	GO:0003844: 1,4-alpha-glucan branching enzyme activity	3.20E-04
26	GO:0016630: protochlorophyllide reductase activity	3.20E-04
27	GO:0008883: glutamyl-tRNA reductase activity	3.20E-04
28	GO:0042389: omega-3 fatty acid desaturase activity	3.20E-04
29	GO:0010297: heteropolysaccharide binding	3.20E-04
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.20E-04
31	GO:0008168: methyltransferase activity	5.12E-04
32	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	5.26E-04
33	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.26E-04
34	GO:0043169: cation binding	5.26E-04
35	GO:0004373: glycogen (starch) synthase activity	5.26E-04
36	GO:0050734: hydroxycinnamoyltransferase activity	5.26E-04
37	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.53E-04
38	GO:0016851: magnesium chelatase activity	7.53E-04
39	GO:0046715: borate transmembrane transporter activity	7.53E-04
40	GO:0017057: 6-phosphogluconolactonase activity	7.53E-04
41	GO:0009011: starch synthase activity	9.98E-04
42	GO:0015204: urea transmembrane transporter activity	9.98E-04
43	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.26E-03
44	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.26E-03
45	GO:0009922: fatty acid elongase activity	1.26E-03
46	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.55E-03
47	GO:0008200: ion channel inhibitor activity	1.55E-03
48	GO:2001070: starch binding	1.55E-03
49	GO:0102391: decanoate--CoA ligase activity	1.86E-03
50	GO:0004126: cytidine deaminase activity	1.86E-03
51	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.86E-03
52	GO:0004467: long-chain fatty acid-CoA ligase activity	2.18E-03
53	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.88E-03
54	GO:0008271: secondary active sulfate transmembrane transporter activity	2.88E-03
55	GO:0003993: acid phosphatase activity	2.93E-03
56	GO:0050661: NADP binding	3.19E-03
57	GO:0016788: hydrolase activity, acting on ester bonds	3.30E-03
58	GO:0015293: symporter activity	4.05E-03
59	GO:0030234: enzyme regulator activity	4.06E-03
60	GO:0008047: enzyme activator activity	4.06E-03
61	GO:0044183: protein binding involved in protein folding	4.48E-03
62	GO:0015116: sulfate transmembrane transporter activity	4.92E-03
63	GO:0004565: beta-galactosidase activity	5.37E-03
64	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.81E-03
65	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.81E-03
66	GO:0031409: pigment binding	6.81E-03
67	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.81E-03
68	GO:0047134: protein-disulfide reductase activity	1.06E-02
69	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.18E-02
70	GO:0008536: Ran GTPase binding	1.18E-02
71	GO:0004791: thioredoxin-disulfide reductase activity	1.25E-02
72	GO:0004872: receptor activity	1.31E-02
73	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.37E-02
74	GO:0048038: quinone binding	1.37E-02
75	GO:0016491: oxidoreductase activity	1.42E-02
76	GO:0000156: phosphorelay response regulator activity	1.51E-02
77	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.51E-02
78	GO:0005200: structural constituent of cytoskeleton	1.64E-02
79	GO:0015250: water channel activity	1.79E-02
80	GO:0016168: chlorophyll binding	1.86E-02
81	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.00E-02
82	GO:0004222: metalloendopeptidase activity	2.31E-02
83	GO:0052689: carboxylic ester hydrolase activity	2.54E-02
84	GO:0003746: translation elongation factor activity	2.55E-02
85	GO:0051287: NAD binding	3.50E-02
86	GO:0031625: ubiquitin protein ligase binding	4.06E-02
87	GO:0045330: aspartyl esterase activity	4.06E-02
88	GO:0030599: pectinesterase activity	4.65E-02
89	GO:0015035: protein disulfide oxidoreductase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	2.44E-25
2	GO:0009507: chloroplast	7.92E-22
3	GO:0009535: chloroplast thylakoid membrane	2.70E-14
4	GO:0009941: chloroplast envelope	1.20E-10
5	GO:0009579: thylakoid	2.38E-07
6	GO:0031969: chloroplast membrane	1.05E-05
7	GO:0009570: chloroplast stroma	9.50E-05
8	GO:0009515: granal stacked thylakoid	1.40E-04
9	GO:0010287: plastoglobule	1.44E-04
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.47E-04
11	GO:0048046: apoplast	2.11E-04
12	GO:0031357: integral component of chloroplast inner membrane	3.20E-04
13	GO:0009569: chloroplast starch grain	3.20E-04
14	GO:0031977: thylakoid lumen	3.73E-04
15	GO:0010007: magnesium chelatase complex	5.26E-04
16	GO:0009544: chloroplast ATP synthase complex	9.98E-04
17	GO:0009543: chloroplast thylakoid lumen	1.24E-03
18	GO:0010319: stromule	1.53E-03
19	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.55E-03
20	GO:0009501: amyloplast	2.52E-03
21	GO:0045298: tubulin complex	3.26E-03
22	GO:0016020: membrane	5.63E-03
23	GO:0030076: light-harvesting complex	6.32E-03
24	GO:0043234: protein complex	6.81E-03
25	GO:0009706: chloroplast inner membrane	6.89E-03
26	GO:0009654: photosystem II oxygen evolving complex	7.84E-03
27	GO:0009522: photosystem I	1.25E-02
28	GO:0019898: extrinsic component of membrane	1.31E-02
29	GO:0009707: chloroplast outer membrane	2.16E-02
30	GO:0016021: integral component of membrane	2.32E-02
31	GO:0005783: endoplasmic reticulum	2.60E-02
32	GO:0005887: integral component of plasma membrane	4.59E-02