co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63225

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006511: ubiquitin-dependent protein catabolic process	1.36E-09
2	GO:0048455: stamen formation	1.48E-05
3	GO:0030433: ubiquitin-dependent ERAD pathway	2.99E-05
4	GO:0051788: response to misfolded protein	3.88E-05
5	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.28E-05
6	GO:2000034: regulation of seed maturation	6.95E-05
7	GO:0010498: proteasomal protein catabolic process	6.95E-05
8	GO:0010255: glucose mediated signaling pathway	1.05E-04
9	GO:0006882: cellular zinc ion homeostasis	1.05E-04
10	GO:0046355: mannan catabolic process	1.45E-04
11	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.34E-04
12	GO:0043248: proteasome assembly	2.34E-04
13	GO:0010189: vitamin E biosynthetic process	2.82E-04
14	GO:0048528: post-embryonic root development	3.32E-04
15	GO:0006098: pentose-phosphate shunt	4.93E-04
16	GO:0071577: zinc II ion transmembrane transport	5.49E-04
17	GO:0009651: response to salt stress	6.76E-04
18	GO:0006094: gluconeogenesis	7.91E-04
19	GO:0010030: positive regulation of seed germination	9.19E-04
20	GO:0010431: seed maturation	1.19E-03
21	GO:0010154: fruit development	1.65E-03
22	GO:0030163: protein catabolic process	2.07E-03
23	GO:0016579: protein deubiquitination	2.33E-03
24	GO:0010029: regulation of seed germination	2.52E-03
25	GO:0006974: cellular response to DNA damage stimulus	2.61E-03
26	GO:0048767: root hair elongation	3.00E-03
27	GO:0009555: pollen development	3.31E-03
28	GO:0030001: metal ion transport	3.71E-03
29	GO:0009744: response to sucrose	4.04E-03
30	GO:0000209: protein polyubiquitination	4.15E-03
31	GO:0042538: hyperosmotic salinity response	4.71E-03
32	GO:0051603: proteolysis involved in cellular protein catabolic process	5.07E-03
33	GO:0006096: glycolytic process	5.55E-03
34	GO:0043086: negative regulation of catalytic activity	5.55E-03
35	GO:0009553: embryo sac development	6.18E-03
36	GO:0009409: response to cold	9.02E-03
37	GO:0010150: leaf senescence	9.23E-03
38	GO:0046686: response to cadmium ion	1.04E-02
39	GO:0048366: leaf development	1.41E-02
40	GO:0009737: response to abscisic acid	1.42E-02
41	GO:0080167: response to karrikin	1.46E-02
42	GO:0046777: protein autophosphorylation	1.53E-02
43	GO:0009408: response to heat	1.93E-02
44	GO:0009735: response to cytokinin	2.72E-02
45	GO:0009414: response to water deprivation	4.71E-02
46	GO:0042742: defense response to bacterium	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0004298: threonine-type endopeptidase activity	6.98E-10
2	GO:0008253: 5'-nucleotidase activity	6.95E-05
3	GO:0004848: ureidoglycolate hydrolase activity	6.95E-05
4	GO:0008233: peptidase activity	9.40E-05
5	GO:0001653: peptide receptor activity	1.05E-04
6	GO:0016985: mannan endo-1,4-beta-mannosidase activity	1.45E-04
7	GO:0031593: polyubiquitin binding	2.34E-04
8	GO:0036402: proteasome-activating ATPase activity	2.34E-04
9	GO:0004332: fructose-bisphosphate aldolase activity	2.34E-04
10	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	6.08E-04
11	GO:0001054: RNA polymerase I activity	6.67E-04
12	GO:0001056: RNA polymerase III activity	7.29E-04
13	GO:0004175: endopeptidase activity	8.55E-04
14	GO:0017025: TBP-class protein binding	9.19E-04
15	GO:0005385: zinc ion transmembrane transporter activity	1.05E-03
16	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.19E-03
17	GO:0046873: metal ion transmembrane transporter activity	1.65E-03
18	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.89E-03
19	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.70E-03
20	GO:0016887: ATPase activity	2.89E-03
21	GO:0030145: manganese ion binding	3.20E-03
22	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.95E-03
23	GO:0005516: calmodulin binding	4.96E-03
24	GO:0031625: ubiquitin protein ligase binding	5.31E-03
25	GO:0045735: nutrient reservoir activity	5.55E-03
26	GO:0046910: pectinesterase inhibitor activity	8.79E-03
27	GO:0061630: ubiquitin protein ligase activity	1.51E-02
28	GO:0005524: ATP binding	2.92E-02
29	GO:0016740: transferase activity	3.34E-02
30	GO:0043565: sequence-specific DNA binding	3.42E-02
31	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.54E-02
32	GO:0005507: copper ion binding	3.73E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	6.61E-12
2	GO:0005839: proteasome core complex	6.98E-10
3	GO:0019773: proteasome core complex, alpha-subunit complex	3.56E-06
4	GO:0008540: proteasome regulatory particle, base subcomplex	5.70E-06
5	GO:0019774: proteasome core complex, beta-subunit complex	1.48E-05
6	GO:0048046: apoplast	1.08E-04
7	GO:0031597: cytosolic proteasome complex	2.82E-04
8	GO:0031595: nuclear proteasome complex	3.32E-04
9	GO:0005736: DNA-directed RNA polymerase I complex	4.93E-04
10	GO:0005666: DNA-directed RNA polymerase III complex	5.49E-04
11	GO:0005740: mitochondrial envelope	6.08E-04
12	GO:0005741: mitochondrial outer membrane	1.19E-03
13	GO:0000325: plant-type vacuole	3.20E-03
14	GO:0005774: vacuolar membrane	4.15E-03
15	GO:0031966: mitochondrial membrane	4.71E-03
16	GO:0005829: cytosol	4.81E-03
17	GO:0009706: chloroplast inner membrane	6.31E-03
18	GO:0005783: endoplasmic reticulum	1.01E-02
19	GO:0031969: chloroplast membrane	1.46E-02
20	GO:0005618: cell wall	2.65E-02
21	GO:0005773: vacuole	3.55E-02
22	GO:0016020: membrane	4.30E-02