co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63100

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:0042352: GDP-L-fucose salvage	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:1900865: chloroplast RNA modification	9.17E-05
5	GO:0031425: chloroplast RNA processing	9.17E-05
6	GO:0006741: NADP biosynthetic process	2.12E-04
7	GO:0031648: protein destabilization	2.12E-04
8	GO:0016255: attachment of GPI anchor to protein	3.54E-04
9	GO:0019674: NAD metabolic process	3.54E-04
10	GO:0019363: pyridine nucleotide biosynthetic process	5.10E-04
11	GO:0016556: mRNA modification	5.10E-04
12	GO:1902347: response to strigolactone	6.78E-04
13	GO:0042274: ribosomal small subunit biogenesis	6.78E-04
14	GO:0010405: arabinogalactan protein metabolic process	1.05E-03
15	GO:0042549: photosystem II stabilization	1.05E-03
16	GO:0009959: negative gravitropism	1.05E-03
17	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.05E-03
18	GO:0009648: photoperiodism	1.25E-03
19	GO:0010161: red light signaling pathway	1.46E-03
20	GO:0009704: de-etiolation	1.69E-03
21	GO:0042255: ribosome assembly	1.69E-03
22	GO:0006353: DNA-templated transcription, termination	1.69E-03
23	GO:0010100: negative regulation of photomorphogenesis	1.93E-03
24	GO:0010099: regulation of photomorphogenesis	1.93E-03
25	GO:0009657: plastid organization	1.93E-03
26	GO:0051865: protein autoubiquitination	2.18E-03
27	GO:0006783: heme biosynthetic process	2.18E-03
28	GO:0000902: cell morphogenesis	2.18E-03
29	GO:0005982: starch metabolic process	2.43E-03
30	GO:0045892: negative regulation of transcription, DNA-templated	2.52E-03
31	GO:0012501: programmed cell death	3.26E-03
32	GO:0005983: starch catabolic process	3.26E-03
33	GO:0010628: positive regulation of gene expression	3.56E-03
34	GO:0010102: lateral root morphogenesis	3.56E-03
35	GO:0090351: seedling development	4.18E-03
36	GO:0042753: positive regulation of circadian rhythm	4.50E-03
37	GO:0010187: negative regulation of seed germination	4.83E-03
38	GO:0048511: rhythmic process	5.52E-03
39	GO:0048278: vesicle docking	5.52E-03
40	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.87E-03
41	GO:0009686: gibberellin biosynthetic process	6.23E-03
42	GO:0045492: xylan biosynthetic process	6.61E-03
43	GO:0009451: RNA modification	6.67E-03
44	GO:0009960: endosperm development	7.77E-03
45	GO:0008380: RNA splicing	7.79E-03
46	GO:0061025: membrane fusion	8.17E-03
47	GO:1901657: glycosyl compound metabolic process	9.85E-03
48	GO:0030163: protein catabolic process	9.85E-03
49	GO:0009567: double fertilization forming a zygote and endosperm	1.03E-02
50	GO:0009723: response to ethylene	1.17E-02
51	GO:0010027: thylakoid membrane organization	1.17E-02
52	GO:0010029: regulation of seed germination	1.21E-02
53	GO:0006906: vesicle fusion	1.26E-02
54	GO:0048573: photoperiodism, flowering	1.31E-02
55	GO:0015995: chlorophyll biosynthetic process	1.31E-02
56	GO:0009793: embryo development ending in seed dormancy	1.33E-02
57	GO:0016310: phosphorylation	1.45E-02
58	GO:0000160: phosphorelay signal transduction system	1.46E-02
59	GO:0007568: aging	1.56E-02
60	GO:0016042: lipid catabolic process	1.80E-02
61	GO:0006887: exocytosis	1.88E-02
62	GO:0006631: fatty acid metabolic process	1.88E-02
63	GO:0009733: response to auxin	1.89E-02
64	GO:0006397: mRNA processing	1.94E-02
65	GO:0006508: proteolysis	2.03E-02
66	GO:0009736: cytokinin-activated signaling pathway	2.46E-02
67	GO:0006857: oligopeptide transport	2.58E-02
68	GO:0009734: auxin-activated signaling pathway	2.62E-02
69	GO:0048367: shoot system development	2.84E-02
70	GO:0009740: gibberellic acid mediated signaling pathway	3.03E-02
71	GO:0006413: translational initiation	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
2	GO:0051752: phosphoglucan, water dikinase activity	0.00E+00
3	GO:0050201: fucokinase activity	0.00E+00
4	GO:0004519: endonuclease activity	8.41E-05
5	GO:0042736: NADH kinase activity	8.96E-05
6	GO:0010313: phytochrome binding	8.96E-05
7	GO:0019200: carbohydrate kinase activity	2.12E-04
8	GO:0003727: single-stranded RNA binding	4.38E-04
9	GO:0004335: galactokinase activity	6.78E-04
10	GO:2001070: starch binding	1.05E-03
11	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.05E-03
12	GO:0016832: aldehyde-lyase activity	1.25E-03
13	GO:0003951: NAD+ kinase activity	1.93E-03
14	GO:0016298: lipase activity	2.77E-03
15	GO:0004190: aspartic-type endopeptidase activity	4.18E-03
16	GO:0004176: ATP-dependent peptidase activity	5.52E-03
17	GO:0004518: nuclease activity	9.42E-03
18	GO:0000156: phosphorelay response regulator activity	9.85E-03
19	GO:0008237: metallopeptidase activity	1.07E-02
20	GO:0102483: scopolin beta-glucosidase activity	1.31E-02
21	GO:0052689: carboxylic ester hydrolase activity	1.39E-02
22	GO:0004222: metalloendopeptidase activity	1.51E-02
23	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.56E-02
24	GO:0008422: beta-glucosidase activity	1.77E-02
25	GO:0000149: SNARE binding	1.77E-02
26	GO:0005484: SNAP receptor activity	1.99E-02
27	GO:0043621: protein self-association	2.10E-02
28	GO:0004842: ubiquitin-protein transferase activity	2.45E-02
29	GO:0003690: double-stranded DNA binding	2.52E-02
30	GO:0016887: ATPase activity	2.88E-02
31	GO:0003723: RNA binding	2.89E-02
32	GO:0016874: ligase activity	3.03E-02
33	GO:0004386: helicase activity	3.36E-02
34	GO:0016758: transferase activity, transferring hexosyl groups	3.64E-02
35	GO:0019843: rRNA binding	3.71E-02

Rank	GO Term	Adjusted P value
1	GO:0042765: GPI-anchor transamidase complex	3.54E-04
2	GO:0009654: photosystem II oxygen evolving complex	5.17E-03
3	GO:0019898: extrinsic component of membrane	8.58E-03
4	GO:0031201: SNARE complex	1.88E-02
5	GO:0012505: endomembrane system	3.10E-02
6	GO:0009534: chloroplast thylakoid	3.97E-02
7	GO:0009507: chloroplast	4.79E-02