co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905157: positive regulation of photosynthesis	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
4	GO:0019252: starch biosynthetic process	9.77E-05
5	GO:0032502: developmental process	1.19E-04
6	GO:0000476: maturation of 4.5S rRNA	1.56E-04
7	GO:0000967: rRNA 5'-end processing	1.56E-04
8	GO:1905039: carboxylic acid transmembrane transport	1.56E-04
9	GO:1905200: gibberellic acid transmembrane transport	1.56E-04
10	GO:0046467: membrane lipid biosynthetic process	1.56E-04
11	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	1.56E-04
12	GO:0065002: intracellular protein transmembrane transport	1.56E-04
13	GO:0080112: seed growth	1.56E-04
14	GO:0043953: protein transport by the Tat complex	1.56E-04
15	GO:1904143: positive regulation of carotenoid biosynthetic process	3.55E-04
16	GO:0034470: ncRNA processing	3.55E-04
17	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.55E-04
18	GO:0006898: receptor-mediated endocytosis	3.55E-04
19	GO:0034755: iron ion transmembrane transport	3.55E-04
20	GO:0071457: cellular response to ozone	3.55E-04
21	GO:0006954: inflammatory response	5.82E-04
22	GO:0034051: negative regulation of plant-type hypersensitive response	5.82E-04
23	GO:0005977: glycogen metabolic process	5.82E-04
24	GO:0009052: pentose-phosphate shunt, non-oxidative branch	8.33E-04
25	GO:0006168: adenine salvage	8.33E-04
26	GO:0071786: endoplasmic reticulum tubular network organization	8.33E-04
27	GO:0006166: purine ribonucleoside salvage	8.33E-04
28	GO:0006020: inositol metabolic process	8.33E-04
29	GO:0071484: cellular response to light intensity	8.33E-04
30	GO:0009152: purine ribonucleotide biosynthetic process	8.33E-04
31	GO:0046653: tetrahydrofolate metabolic process	8.33E-04
32	GO:0006021: inositol biosynthetic process	1.10E-03
33	GO:0071483: cellular response to blue light	1.10E-03
34	GO:0010021: amylopectin biosynthetic process	1.10E-03
35	GO:0071486: cellular response to high light intensity	1.10E-03
36	GO:0009765: photosynthesis, light harvesting	1.10E-03
37	GO:0006564: L-serine biosynthetic process	1.40E-03
38	GO:0009904: chloroplast accumulation movement	1.40E-03
39	GO:0044209: AMP salvage	1.40E-03
40	GO:0006465: signal peptide processing	1.40E-03
41	GO:0071493: cellular response to UV-B	1.40E-03
42	GO:1901657: glycosyl compound metabolic process	1.58E-03
43	GO:0010190: cytochrome b6f complex assembly	1.72E-03
44	GO:0009643: photosynthetic acclimation	1.72E-03
45	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.72E-03
46	GO:0046855: inositol phosphate dephosphorylation	1.72E-03
47	GO:0010027: thylakoid membrane organization	1.99E-03
48	GO:0009903: chloroplast avoidance movement	2.06E-03
49	GO:0071333: cellular response to glucose stimulus	2.06E-03
50	GO:1901259: chloroplast rRNA processing	2.06E-03
51	GO:0015995: chlorophyll biosynthetic process	2.34E-03
52	GO:0009645: response to low light intensity stimulus	2.42E-03
53	GO:1900056: negative regulation of leaf senescence	2.42E-03
54	GO:0009769: photosynthesis, light harvesting in photosystem II	2.42E-03
55	GO:0010078: maintenance of root meristem identity	2.80E-03
56	GO:0052543: callose deposition in cell wall	2.80E-03
57	GO:0016559: peroxisome fission	2.80E-03
58	GO:0042255: ribosome assembly	2.80E-03
59	GO:0006353: DNA-templated transcription, termination	2.80E-03
60	GO:0019430: removal of superoxide radicals	3.21E-03
61	GO:0043562: cellular response to nitrogen levels	3.21E-03
62	GO:0015996: chlorophyll catabolic process	3.21E-03
63	GO:0009657: plastid organization	3.21E-03
64	GO:0034599: cellular response to oxidative stress	3.42E-03
65	GO:0009821: alkaloid biosynthetic process	3.63E-03
66	GO:0006098: pentose-phosphate shunt	3.63E-03
67	GO:0009658: chloroplast organization	3.92E-03
68	GO:0005982: starch metabolic process	4.06E-03
69	GO:0006779: porphyrin-containing compound biosynthetic process	4.06E-03
70	GO:0010380: regulation of chlorophyll biosynthetic process	4.06E-03
71	GO:0010114: response to red light	4.21E-03
72	GO:0006782: protoporphyrinogen IX biosynthetic process	4.52E-03
73	GO:0072593: reactive oxygen species metabolic process	4.99E-03
74	GO:0006879: cellular iron ion homeostasis	4.99E-03
75	GO:0009684: indoleacetic acid biosynthetic process	4.99E-03
76	GO:0015770: sucrose transport	4.99E-03
77	GO:0006790: sulfur compound metabolic process	5.48E-03
78	GO:0030048: actin filament-based movement	5.98E-03
79	GO:0006094: gluconeogenesis	5.98E-03
80	GO:0010588: cotyledon vascular tissue pattern formation	5.98E-03
81	GO:0015979: photosynthesis	6.10E-03
82	GO:0010207: photosystem II assembly	6.50E-03
83	GO:0007015: actin filament organization	6.50E-03
84	GO:0048467: gynoecium development	6.50E-03
85	GO:0010020: chloroplast fission	6.50E-03
86	GO:0046854: phosphatidylinositol phosphorylation	7.04E-03
87	GO:0009901: anther dehiscence	7.04E-03
88	GO:0006636: unsaturated fatty acid biosynthetic process	7.59E-03
89	GO:0009768: photosynthesis, light harvesting in photosystem I	8.74E-03
90	GO:0019915: lipid storage	9.34E-03
91	GO:0009269: response to desiccation	9.34E-03
92	GO:0030433: ubiquitin-dependent ERAD pathway	9.96E-03
93	GO:0019748: secondary metabolic process	9.96E-03
94	GO:0071215: cellular response to abscisic acid stimulus	1.06E-02
95	GO:0009058: biosynthetic process	1.07E-02
96	GO:0009306: protein secretion	1.12E-02
97	GO:0080022: primary root development	1.25E-02
98	GO:0010087: phloem or xylem histogenesis	1.25E-02
99	GO:0009958: positive gravitropism	1.32E-02
100	GO:0006520: cellular amino acid metabolic process	1.32E-02
101	GO:0009741: response to brassinosteroid	1.32E-02
102	GO:0071472: cellular response to salt stress	1.32E-02
103	GO:0009646: response to absence of light	1.39E-02
104	GO:0048825: cotyledon development	1.46E-02
105	GO:0009851: auxin biosynthetic process	1.46E-02
106	GO:0010228: vegetative to reproductive phase transition of meristem	1.46E-02
107	GO:0071554: cell wall organization or biogenesis	1.54E-02
108	GO:0009630: gravitropism	1.61E-02
109	GO:0009416: response to light stimulus	1.75E-02
110	GO:0009567: double fertilization forming a zygote and endosperm	1.76E-02
111	GO:0005975: carbohydrate metabolic process	2.22E-02
112	GO:0016311: dephosphorylation	2.32E-02
113	GO:0018298: protein-chromophore linkage	2.41E-02
114	GO:0009813: flavonoid biosynthetic process	2.50E-02
115	GO:0010218: response to far red light	2.58E-02
116	GO:0048527: lateral root development	2.67E-02
117	GO:0009910: negative regulation of flower development	2.67E-02
118	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.78E-02
119	GO:0009637: response to blue light	2.85E-02
120	GO:0009853: photorespiration	2.85E-02
121	GO:0055114: oxidation-reduction process	3.40E-02
122	GO:0051707: response to other organism	3.42E-02
123	GO:0000209: protein polyubiquitination	3.51E-02
124	GO:0009644: response to high light intensity	3.61E-02
125	GO:0006364: rRNA processing	4.22E-02
126	GO:0006813: potassium ion transport	4.22E-02
127	GO:0010224: response to UV-B	4.33E-02
128	GO:0006096: glycolytic process	4.75E-02
129	GO:0048367: shoot system development	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
5	GO:0009011: starch synthase activity	1.93E-05
6	GO:0034256: chlorophyll(ide) b reductase activity	1.56E-04
7	GO:0045486: naringenin 3-dioxygenase activity	1.56E-04
8	GO:1905201: gibberellin transmembrane transporter activity	1.56E-04
9	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	3.55E-04
10	GO:0019156: isoamylase activity	3.55E-04
11	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	3.55E-04
12	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.55E-04
13	GO:0004617: phosphoglycerate dehydrogenase activity	3.55E-04
14	GO:0052832: inositol monophosphate 3-phosphatase activity	3.55E-04
15	GO:0033201: alpha-1,4-glucan synthase activity	3.55E-04
16	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.55E-04
17	GO:0008934: inositol monophosphate 1-phosphatase activity	3.55E-04
18	GO:0052833: inositol monophosphate 4-phosphatase activity	3.55E-04
19	GO:0004751: ribose-5-phosphate isomerase activity	5.82E-04
20	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	5.82E-04
21	GO:0008864: formyltetrahydrofolate deformylase activity	5.82E-04
22	GO:0004373: glycogen (starch) synthase activity	5.82E-04
23	GO:0003999: adenine phosphoribosyltransferase activity	8.33E-04
24	GO:0022890: inorganic cation transmembrane transporter activity	8.33E-04
25	GO:0016851: magnesium chelatase activity	8.33E-04
26	GO:0080032: methyl jasmonate esterase activity	1.10E-03
27	GO:0016491: oxidoreductase activity	1.38E-03
28	GO:0016846: carbon-sulfur lyase activity	1.40E-03
29	GO:0004556: alpha-amylase activity	1.72E-03
30	GO:0080030: methyl indole-3-acetate esterase activity	1.72E-03
31	GO:0004332: fructose-bisphosphate aldolase activity	1.72E-03
32	GO:0004784: superoxide dismutase activity	1.72E-03
33	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.06E-03
34	GO:0102483: scopolin beta-glucosidase activity	2.34E-03
35	GO:0008422: beta-glucosidase activity	3.57E-03
36	GO:0016788: hydrolase activity, acting on ester bonds	4.02E-03
37	GO:0016844: strictosidine synthase activity	4.06E-03
38	GO:0005381: iron ion transmembrane transporter activity	4.06E-03
39	GO:0008515: sucrose transmembrane transporter activity	4.99E-03
40	GO:0008559: xenobiotic-transporting ATPase activity	4.99E-03
41	GO:0015386: potassium:proton antiporter activity	4.99E-03
42	GO:0003725: double-stranded RNA binding	5.98E-03
43	GO:0004022: alcohol dehydrogenase (NAD) activity	5.98E-03
44	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.50E-03
45	GO:0003774: motor activity	6.50E-03
46	GO:0051119: sugar transmembrane transporter activity	7.04E-03
47	GO:0031409: pigment binding	7.59E-03
48	GO:0031418: L-ascorbic acid binding	8.16E-03
49	GO:0015079: potassium ion transmembrane transporter activity	8.74E-03
50	GO:0019843: rRNA binding	1.01E-02
51	GO:0003727: single-stranded RNA binding	1.12E-02
52	GO:0016787: hydrolase activity	1.19E-02
53	GO:0015299: solute:proton antiporter activity	1.39E-02
54	GO:0042802: identical protein binding	1.78E-02
55	GO:0016413: O-acetyltransferase activity	1.92E-02
56	GO:0016597: amino acid binding	1.92E-02
57	GO:0016168: chlorophyll binding	2.07E-02
58	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.32E-02
59	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.48E-02
60	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.67E-02
61	GO:0003993: acid phosphatase activity	2.94E-02
62	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.94E-02
63	GO:0005525: GTP binding	3.27E-02
64	GO:0004185: serine-type carboxypeptidase activity	3.42E-02
65	GO:0051287: NAD binding	3.91E-02
66	GO:0003690: double-stranded DNA binding	4.33E-02
67	GO:0031625: ubiquitin protein ligase binding	4.54E-02
68	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	9.28E-14
3	GO:0009535: chloroplast thylakoid membrane	1.95E-06
4	GO:0033281: TAT protein transport complex	4.44E-06
5	GO:0005787: signal peptidase complex	1.56E-04
6	GO:0031361: integral component of thylakoid membrane	1.56E-04
7	GO:0031977: thylakoid lumen	4.55E-04
8	GO:0010007: magnesium chelatase complex	5.82E-04
9	GO:0071782: endoplasmic reticulum tubular network	8.33E-04
10	GO:0030658: transport vesicle membrane	8.33E-04
11	GO:0009517: PSII associated light-harvesting complex II	1.10E-03
12	GO:0010287: plastoglobule	1.40E-03
13	GO:0009543: chloroplast thylakoid lumen	1.50E-03
14	GO:0009941: chloroplast envelope	2.01E-03
15	GO:0009707: chloroplast outer membrane	2.59E-03
16	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.80E-03
17	GO:0031982: vesicle	2.80E-03
18	GO:0009501: amyloplast	2.80E-03
19	GO:0016459: myosin complex	4.52E-03
20	GO:0031969: chloroplast membrane	5.15E-03
21	GO:0009579: thylakoid	5.35E-03
22	GO:0009534: chloroplast thylakoid	5.43E-03
23	GO:0009508: plastid chromosome	5.98E-03
24	GO:0030076: light-harvesting complex	7.04E-03
25	GO:0009654: photosystem II oxygen evolving complex	8.74E-03
26	GO:0009570: chloroplast stroma	1.20E-02
27	GO:0009522: photosystem I	1.39E-02
28	GO:0009523: photosystem II	1.46E-02
29	GO:0019898: extrinsic component of membrane	1.46E-02
30	GO:0009295: nucleoid	1.84E-02
31	GO:0005773: vacuole	2.10E-02
32	GO:0000325: plant-type vacuole	2.67E-02
33	GO:0016021: integral component of membrane	4.83E-02