Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G63040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905157: positive regulation of photosynthesis0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
8GO:0015717: triose phosphate transport0.00E+00
9GO:0015995: chlorophyll biosynthetic process3.65E-09
10GO:0009773: photosynthetic electron transport in photosystem I7.69E-09
11GO:0015979: photosynthesis2.65E-07
12GO:0032544: plastid translation1.02E-05
13GO:0055114: oxidation-reduction process1.04E-05
14GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.03E-05
15GO:0071484: cellular response to light intensity3.03E-05
16GO:0006094: gluconeogenesis4.94E-05
17GO:0015994: chlorophyll metabolic process5.45E-05
18GO:0010207: photosystem II assembly5.99E-05
19GO:0006636: unsaturated fatty acid biosynthetic process8.51E-05
20GO:0009768: photosynthesis, light harvesting in photosystem I1.16E-04
21GO:0009643: photosynthetic acclimation1.25E-04
22GO:1901259: chloroplast rRNA processing1.71E-04
23GO:0010114: response to red light2.02E-04
24GO:0009772: photosynthetic electron transport in photosystem II2.24E-04
25GO:0010196: nonphotochemical quenching2.24E-04
26GO:0010028: xanthophyll cycle2.87E-04
27GO:0034337: RNA folding2.87E-04
28GO:0000023: maltose metabolic process2.87E-04
29GO:0000025: maltose catabolic process2.87E-04
30GO:0080112: seed growth2.87E-04
31GO:0005980: glycogen catabolic process2.87E-04
32GO:1905039: carboxylic acid transmembrane transport2.87E-04
33GO:1905200: gibberellic acid transmembrane transport2.87E-04
34GO:0006098: pentose-phosphate shunt4.20E-04
35GO:0005982: starch metabolic process4.98E-04
36GO:0016122: xanthophyll metabolic process6.30E-04
37GO:0030388: fructose 1,6-bisphosphate metabolic process6.30E-04
38GO:0080029: cellular response to boron-containing substance levels6.30E-04
39GO:0006898: receptor-mediated endocytosis6.30E-04
40GO:0005976: polysaccharide metabolic process6.30E-04
41GO:0071457: cellular response to ozone6.30E-04
42GO:0010353: response to trehalose6.30E-04
43GO:0018119: peptidyl-cysteine S-nitrosylation6.69E-04
44GO:0005983: starch catabolic process7.66E-04
45GO:0019253: reductive pentose-phosphate cycle9.74E-04
46GO:0006000: fructose metabolic process1.02E-03
47GO:0090391: granum assembly1.02E-03
48GO:0006518: peptide metabolic process1.02E-03
49GO:0035436: triose phosphate transmembrane transport1.02E-03
50GO:0006810: transport1.03E-03
51GO:0046686: response to cadmium ion1.19E-03
52GO:0032259: methylation1.43E-03
53GO:0046713: borate transport1.46E-03
54GO:1902358: sulfate transmembrane transport1.46E-03
55GO:0006020: inositol metabolic process1.46E-03
56GO:0051085: chaperone mediated protein folding requiring cofactor1.46E-03
57GO:0009152: purine ribonucleotide biosynthetic process1.46E-03
58GO:0046653: tetrahydrofolate metabolic process1.46E-03
59GO:0009052: pentose-phosphate shunt, non-oxidative branch1.46E-03
60GO:0061077: chaperone-mediated protein folding1.62E-03
61GO:0071486: cellular response to high light intensity1.96E-03
62GO:0009765: photosynthesis, light harvesting1.96E-03
63GO:0045727: positive regulation of translation1.96E-03
64GO:0015713: phosphoglycerate transport1.96E-03
65GO:0006021: inositol biosynthetic process1.96E-03
66GO:0071483: cellular response to blue light1.96E-03
67GO:0010021: amylopectin biosynthetic process1.96E-03
68GO:0006364: rRNA processing2.17E-03
69GO:0071493: cellular response to UV-B2.50E-03
70GO:0006656: phosphatidylcholine biosynthetic process2.50E-03
71GO:0006564: L-serine biosynthetic process2.50E-03
72GO:0009904: chloroplast accumulation movement2.50E-03
73GO:0006096: glycolytic process2.69E-03
74GO:0009409: response to cold2.69E-03
75GO:0019252: starch biosynthetic process3.04E-03
76GO:0010304: PSII associated light-harvesting complex II catabolic process3.08E-03
77GO:0042549: photosystem II stabilization3.08E-03
78GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.08E-03
79GO:1902456: regulation of stomatal opening3.08E-03
80GO:0010190: cytochrome b6f complex assembly3.08E-03
81GO:0009228: thiamine biosynthetic process3.08E-03
82GO:0046855: inositol phosphate dephosphorylation3.08E-03
83GO:1901657: glycosyl compound metabolic process3.71E-03
84GO:0009955: adaxial/abaxial pattern specification3.71E-03
85GO:0042026: protein refolding3.71E-03
86GO:0009903: chloroplast avoidance movement3.71E-03
87GO:0009854: oxidative photosynthetic carbon pathway3.71E-03
88GO:0009610: response to symbiotic fungus4.38E-03
89GO:0008272: sulfate transport4.38E-03
90GO:0009769: photosynthesis, light harvesting in photosystem II4.38E-03
91GO:0009645: response to low light intensity stimulus4.38E-03
92GO:0010027: thylakoid membrane organization4.70E-03
93GO:0052543: callose deposition in cell wall5.08E-03
94GO:0005978: glycogen biosynthetic process5.08E-03
95GO:0009642: response to light intensity5.08E-03
96GO:0030091: protein repair5.08E-03
97GO:0006353: DNA-templated transcription, termination5.08E-03
98GO:0006002: fructose 6-phosphate metabolic process5.82E-03
99GO:0015996: chlorophyll catabolic process5.82E-03
100GO:0019430: removal of superoxide radicals5.82E-03
101GO:0009657: plastid organization5.82E-03
102GO:0018298: protein-chromophore linkage6.14E-03
103GO:0009821: alkaloid biosynthetic process6.60E-03
104GO:0010206: photosystem II repair6.60E-03
105GO:0006783: heme biosynthetic process6.60E-03
106GO:0006754: ATP biosynthetic process6.60E-03
107GO:0010218: response to far red light6.77E-03
108GO:0009631: cold acclimation7.10E-03
109GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process7.41E-03
110GO:0010205: photoinhibition7.41E-03
111GO:0009637: response to blue light7.78E-03
112GO:0009853: photorespiration7.78E-03
113GO:0009641: shade avoidance8.26E-03
114GO:0006782: protoporphyrinogen IX biosynthetic process8.26E-03
115GO:0015770: sucrose transport9.14E-03
116GO:0043085: positive regulation of catalytic activity9.14E-03
117GO:0006415: translational termination9.14E-03
118GO:0000272: polysaccharide catabolic process9.14E-03
119GO:0006790: sulfur compound metabolic process1.01E-02
120GO:0016024: CDP-diacylglycerol biosynthetic process1.01E-02
121GO:0018107: peptidyl-threonine phosphorylation1.10E-02
122GO:0005986: sucrose biosynthetic process1.10E-02
123GO:0009658: chloroplast organization1.19E-02
124GO:0009266: response to temperature stimulus1.20E-02
125GO:0010143: cutin biosynthetic process1.20E-02
126GO:0007015: actin filament organization1.20E-02
127GO:0010223: secondary shoot formation1.20E-02
128GO:0009901: anther dehiscence1.30E-02
129GO:0005985: sucrose metabolic process1.30E-02
130GO:0046854: phosphatidylinositol phosphorylation1.30E-02
131GO:0051017: actin filament bundle assembly1.51E-02
132GO:0006418: tRNA aminoacylation for protein translation1.62E-02
133GO:0019915: lipid storage1.73E-02
134GO:0009269: response to desiccation1.73E-02
135GO:0016114: terpenoid biosynthetic process1.73E-02
136GO:0016226: iron-sulfur cluster assembly1.85E-02
137GO:0030433: ubiquitin-dependent ERAD pathway1.85E-02
138GO:0007005: mitochondrion organization1.85E-02
139GO:0016117: carotenoid biosynthetic process2.21E-02
140GO:0070417: cellular response to cold2.21E-02
141GO:0042631: cellular response to water deprivation2.33E-02
142GO:0000413: protein peptidyl-prolyl isomerization2.33E-02
143GO:0009741: response to brassinosteroid2.46E-02
144GO:0071472: cellular response to salt stress2.46E-02
145GO:0006662: glycerol ether metabolic process2.46E-02
146GO:0006629: lipid metabolic process2.56E-02
147GO:0009058: biosynthetic process2.56E-02
148GO:0015986: ATP synthesis coupled proton transport2.59E-02
149GO:0032502: developmental process3.00E-02
150GO:0009630: gravitropism3.00E-02
151GO:0006633: fatty acid biosynthetic process3.05E-02
152GO:0009627: systemic acquired resistance4.02E-02
153GO:0006979: response to oxidative stress4.38E-02
154GO:0009817: defense response to fungus, incompatible interaction4.49E-02
155GO:0048481: plant ovule development4.49E-02
156GO:0008219: cell death4.49E-02
157GO:0009813: flavonoid biosynthetic process4.65E-02
158GO:0007568: aging4.97E-02
RankGO TermAdjusted P value
1GO:0047668: amygdalin beta-glucosidase activity0.00E+00
2GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
3GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
4GO:0046422: violaxanthin de-epoxidase activity0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
7GO:0004567: beta-mannosidase activity0.00E+00
8GO:0008887: glycerate kinase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0080082: esculin beta-glucosidase activity0.00E+00
11GO:0046408: chlorophyll synthetase activity0.00E+00
12GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
13GO:0005528: FK506 binding3.44E-06
14GO:0010297: heteropolysaccharide binding3.77E-06
15GO:0016491: oxidoreductase activity1.01E-05
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.46E-05
17GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.45E-05
18GO:0031409: pigment binding8.51E-05
19GO:0004332: fructose-bisphosphate aldolase activity1.25E-04
20GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.87E-04
21GO:0080079: cellobiose glucosidase activity2.87E-04
22GO:1905201: gibberellin transmembrane transporter activity2.87E-04
23GO:0050521: alpha-glucan, water dikinase activity2.87E-04
24GO:0008184: glycogen phosphorylase activity2.87E-04
25GO:0004134: 4-alpha-glucanotransferase activity2.87E-04
26GO:0004645: phosphorylase activity2.87E-04
27GO:0004853: uroporphyrinogen decarboxylase activity2.87E-04
28GO:0045485: omega-6 fatty acid desaturase activity2.87E-04
29GO:0034256: chlorophyll(ide) b reductase activity2.87E-04
30GO:0015168: glycerol transmembrane transporter activity2.87E-04
31GO:0045486: naringenin 3-dioxygenase activity2.87E-04
32GO:0048038: quinone binding3.57E-04
33GO:0016168: chlorophyll binding6.19E-04
34GO:0047746: chlorophyllase activity6.30E-04
35GO:0042389: omega-3 fatty acid desaturase activity6.30E-04
36GO:0004618: phosphoglycerate kinase activity6.30E-04
37GO:0004617: phosphoglycerate dehydrogenase activity6.30E-04
38GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity6.30E-04
39GO:0052832: inositol monophosphate 3-phosphatase activity6.30E-04
40GO:0033201: alpha-1,4-glucan synthase activity6.30E-04
41GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.30E-04
42GO:0018708: thiol S-methyltransferase activity6.30E-04
43GO:0008934: inositol monophosphate 1-phosphatase activity6.30E-04
44GO:0003844: 1,4-alpha-glucan branching enzyme activity6.30E-04
45GO:0052833: inositol monophosphate 4-phosphatase activity6.30E-04
46GO:0016630: protochlorophyllide reductase activity6.30E-04
47GO:0019172: glyoxalase III activity6.30E-04
48GO:0008967: phosphoglycolate phosphatase activity6.30E-04
49GO:0000234: phosphoethanolamine N-methyltransferase activity6.30E-04
50GO:0047372: acylglycerol lipase activity6.69E-04
51GO:0019843: rRNA binding8.13E-04
52GO:0071917: triose-phosphate transmembrane transporter activity1.02E-03
53GO:0008864: formyltetrahydrofolate deformylase activity1.02E-03
54GO:0010277: chlorophyllide a oxygenase [overall] activity1.02E-03
55GO:0043169: cation binding1.02E-03
56GO:0004373: glycogen (starch) synthase activity1.02E-03
57GO:0002161: aminoacyl-tRNA editing activity1.02E-03
58GO:0004751: ribose-5-phosphate isomerase activity1.02E-03
59GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.02E-03
60GO:0019201: nucleotide kinase activity1.46E-03
61GO:0016149: translation release factor activity, codon specific1.46E-03
62GO:0016851: magnesium chelatase activity1.46E-03
63GO:0022890: inorganic cation transmembrane transporter activity1.46E-03
64GO:0046715: borate transmembrane transporter activity1.46E-03
65GO:0009011: starch synthase activity1.96E-03
66GO:0015204: urea transmembrane transporter activity1.96E-03
67GO:0015120: phosphoglycerate transmembrane transporter activity1.96E-03
68GO:0008168: methyltransferase activity2.42E-03
69GO:0003959: NADPH dehydrogenase activity2.50E-03
70GO:2001070: starch binding3.08E-03
71GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.08E-03
72GO:0004784: superoxide dismutase activity3.08E-03
73GO:0004462: lactoylglutathione lyase activity3.08E-03
74GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.08E-03
75GO:0008200: ion channel inhibitor activity3.08E-03
76GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.71E-03
77GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.71E-03
78GO:0004017: adenylate kinase activity3.71E-03
79GO:0102483: scopolin beta-glucosidase activity5.54E-03
80GO:0008271: secondary active sulfate transmembrane transporter activity5.82E-03
81GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.82E-03
82GO:0003747: translation release factor activity6.60E-03
83GO:0004222: metalloendopeptidase activity6.77E-03
84GO:0016844: strictosidine synthase activity7.41E-03
85GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.41E-03
86GO:0030234: enzyme regulator activity8.26E-03
87GO:0008047: enzyme activator activity8.26E-03
88GO:0008422: beta-glucosidase activity8.50E-03
89GO:0044183: protein binding involved in protein folding9.14E-03
90GO:0015386: potassium:proton antiporter activity9.14E-03
91GO:0008515: sucrose transmembrane transporter activity9.14E-03
92GO:0015116: sulfate transmembrane transporter activity1.01E-02
93GO:0000049: tRNA binding1.01E-02
94GO:0051537: 2 iron, 2 sulfur cluster binding1.09E-02
95GO:0031072: heat shock protein binding1.10E-02
96GO:0004565: beta-galactosidase activity1.10E-02
97GO:0003725: double-stranded RNA binding1.10E-02
98GO:0004022: alcohol dehydrogenase (NAD) activity1.10E-02
99GO:0051119: sugar transmembrane transporter activity1.30E-02
100GO:0051536: iron-sulfur cluster binding1.51E-02
101GO:0031418: L-ascorbic acid binding1.51E-02
102GO:0015079: potassium ion transmembrane transporter activity1.62E-02
103GO:0003824: catalytic activity1.70E-02
104GO:0051082: unfolded protein binding1.94E-02
105GO:0003727: single-stranded RNA binding2.08E-02
106GO:0004812: aminoacyl-tRNA ligase activity2.21E-02
107GO:0047134: protein-disulfide reductase activity2.21E-02
108GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.46E-02
109GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.49E-02
110GO:0004791: thioredoxin-disulfide reductase activity2.59E-02
111GO:0015299: solute:proton antiporter activity2.59E-02
112GO:0050662: coenzyme binding2.59E-02
113GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.13E-02
114GO:0051015: actin filament binding3.13E-02
115GO:0016791: phosphatase activity3.28E-02
116GO:0008237: metallopeptidase activity3.42E-02
117GO:0016597: amino acid binding3.57E-02
118GO:0015250: water channel activity3.72E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.04E-48
2GO:0009535: chloroplast thylakoid membrane1.45E-36
3GO:0009534: chloroplast thylakoid2.44E-33
4GO:0009941: chloroplast envelope1.82E-22
5GO:0009570: chloroplast stroma2.47E-17
6GO:0009579: thylakoid2.83E-15
7GO:0009543: chloroplast thylakoid lumen8.69E-14
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.07E-11
9GO:0031977: thylakoid lumen2.12E-11
10GO:0031969: chloroplast membrane9.90E-09
11GO:0010287: plastoglobule3.40E-08
12GO:0010319: stromule4.05E-05
13GO:0030076: light-harvesting complex7.18E-05
14GO:0042651: thylakoid membrane1.16E-04
15GO:0009501: amyloplast2.83E-04
16GO:0009515: granal stacked thylakoid2.87E-04
17GO:0000427: plastid-encoded plastid RNA polymerase complex6.30E-04
18GO:0031357: integral component of chloroplast inner membrane6.30E-04
19GO:0030095: chloroplast photosystem II9.74E-04
20GO:0010007: magnesium chelatase complex1.02E-03
21GO:0009654: photosystem II oxygen evolving complex1.47E-03
22GO:0009517: PSII associated light-harvesting complex II1.96E-03
23GO:0009544: chloroplast ATP synthase complex1.96E-03
24GO:0009522: photosystem I2.84E-03
25GO:0019898: extrinsic component of membrane3.04E-03
26GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.08E-03
27GO:0009706: chloroplast inner membrane3.40E-03
28GO:0009840: chloroplastic endopeptidase Clp complex3.71E-03
29GO:0031982: vesicle5.08E-03
30GO:0005763: mitochondrial small ribosomal subunit6.60E-03
31GO:0048046: apoplast8.83E-03
32GO:0032040: small-subunit processome1.01E-02
33GO:0005840: ribosome1.57E-02
34GO:0015935: small ribosomal subunit1.73E-02
35GO:0009532: plastid stroma1.73E-02
36GO:0015629: actin cytoskeleton1.96E-02
37GO:0009523: photosystem II2.72E-02
38GO:0005887: integral component of plasma membrane3.73E-02
39GO:0022626: cytosolic ribosome4.91E-02
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Gene type



Gene DE type