Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G62960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
2GO:0010583: response to cyclopentenone4.63E-06
3GO:0006949: syncytium formation2.52E-05
4GO:0046506: sulfolipid biosynthetic process3.37E-05
5GO:0006426: glycyl-tRNA aminoacylation3.37E-05
6GO:0019953: sexual reproduction7.90E-05
7GO:0046902: regulation of mitochondrial membrane permeability2.18E-04
8GO:0016556: mRNA modification2.18E-04
9GO:0009828: plant-type cell wall loosening2.34E-04
10GO:0009826: unidimensional cell growth2.88E-04
11GO:0042991: transcription factor import into nucleus2.95E-04
12GO:0006808: regulation of nitrogen utilization2.95E-04
13GO:0009247: glycolipid biosynthetic process3.77E-04
14GO:0048497: maintenance of floral organ identity3.77E-04
15GO:0045995: regulation of embryonic development6.47E-04
16GO:0009664: plant-type cell wall organization7.35E-04
17GO:0009642: response to light intensity7.44E-04
18GO:0009657: plastid organization8.45E-04
19GO:0009740: gibberellic acid mediated signaling pathway1.04E-03
20GO:0005982: starch metabolic process1.06E-03
21GO:1900865: chloroplast RNA modification1.06E-03
22GO:0031425: chloroplast RNA processing1.06E-03
23GO:0045036: protein targeting to chloroplast1.17E-03
24GO:0012501: programmed cell death1.40E-03
25GO:0005983: starch catabolic process1.40E-03
26GO:0007034: vacuolar transport1.65E-03
27GO:0090351: seedling development1.78E-03
28GO:0009793: embryo development ending in seed dormancy1.88E-03
29GO:0048278: vesicle docking2.33E-03
30GO:0009686: gibberellin biosynthetic process2.63E-03
31GO:0045492: xylan biosynthetic process2.78E-03
32GO:0010091: trichome branching2.78E-03
33GO:0006508: proteolysis2.89E-03
34GO:0048653: anther development3.09E-03
35GO:0007049: cell cycle3.18E-03
36GO:0009741: response to brassinosteroid3.25E-03
37GO:0061025: membrane fusion3.42E-03
38GO:0048825: cotyledon development3.59E-03
39GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.76E-03
40GO:0030163: protein catabolic process4.10E-03
41GO:0010027: thylakoid membrane organization4.83E-03
42GO:0006906: vesicle fusion5.21E-03
43GO:0048573: photoperiodism, flowering5.40E-03
44GO:0006839: mitochondrial transport7.47E-03
45GO:0006887: exocytosis7.69E-03
46GO:0009640: photomorphogenesis8.14E-03
47GO:0009736: cytokinin-activated signaling pathway1.00E-02
48GO:0006417: regulation of translation1.08E-02
49GO:0009742: brassinosteroid mediated signaling pathway1.34E-02
50GO:0006413: translational initiation1.80E-02
51GO:0016036: cellular response to phosphate starvation1.80E-02
52GO:0040008: regulation of growth1.83E-02
53GO:0071555: cell wall organization1.87E-02
54GO:0010468: regulation of gene expression2.15E-02
55GO:0006355: regulation of transcription, DNA-templated3.12E-02
56GO:0016192: vesicle-mediated transport3.12E-02
57GO:0046777: protein autophosphorylation3.16E-02
58GO:0045892: negative regulation of transcription, DNA-templated3.46E-02
59GO:0006351: transcription, DNA-templated3.50E-02
60GO:0006886: intracellular protein transport3.50E-02
61GO:0032259: methylation3.85E-02
62GO:0006281: DNA repair3.97E-02
63GO:0006397: mRNA processing4.10E-02
64GO:0048364: root development4.10E-02
65GO:0016310: phosphorylation4.57E-02
66GO:0009873: ethylene-activated signaling pathway4.76E-02
RankGO TermAdjusted P value
1GO:0051752: phosphoglucan, water dikinase activity0.00E+00
2GO:0046510: UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity0.00E+00
3GO:0009899: ent-kaurene synthase activity0.00E+00
4GO:0004820: glycine-tRNA ligase activity3.37E-05
5GO:0000774: adenyl-nucleotide exchange factor activity8.48E-05
6GO:0019200: carbohydrate kinase activity8.48E-05
7GO:0017150: tRNA dihydrouridine synthase activity1.47E-04
8GO:0005471: ATP:ADP antiporter activity3.77E-04
9GO:2001070: starch binding4.63E-04
10GO:0005347: ATP transmembrane transporter activity5.53E-04
11GO:0004860: protein kinase inhibitor activity1.28E-03
12GO:0004190: aspartic-type endopeptidase activity1.78E-03
13GO:0051087: chaperone binding2.19E-03
14GO:0004176: ATP-dependent peptidase activity2.33E-03
15GO:0016853: isomerase activity3.42E-03
16GO:0004518: nuclease activity3.93E-03
17GO:0008237: metallopeptidase activity4.46E-03
18GO:0004519: endonuclease activity5.63E-03
19GO:0004222: metalloendopeptidase activity6.20E-03
20GO:0000149: SNARE binding7.25E-03
21GO:0016887: ATPase activity8.02E-03
22GO:0005484: SNAP receptor activity8.14E-03
23GO:0003777: microtubule motor activity1.08E-02
24GO:0051082: unfolded protein binding1.28E-02
25GO:0016829: lyase activity1.59E-02
26GO:0008194: UDP-glycosyltransferase activity2.05E-02
27GO:0003824: catalytic activity2.05E-02
28GO:0003743: translation initiation factor activity2.11E-02
29GO:0042802: identical protein binding2.24E-02
30GO:0046983: protein dimerization activity2.50E-02
31GO:0008168: methyltransferase activity2.51E-02
32GO:0043565: sequence-specific DNA binding2.54E-02
33GO:0000287: magnesium ion binding2.55E-02
34GO:0050660: flavin adenine dinucleotide binding2.87E-02
35GO:0008233: peptidase activity2.97E-02
36GO:0042803: protein homodimerization activity3.54E-02
37GO:0003677: DNA binding4.43E-02
RankGO TermAdjusted P value
1GO:0000427: plastid-encoded plastid RNA polymerase complex8.48E-05
2GO:0042646: plastid nucleoid2.18E-04
3GO:0009507: chloroplast5.29E-04
4GO:0000815: ESCRT III complex5.53E-04
5GO:0009536: plastid7.28E-04
6GO:0042644: chloroplast nucleoid9.49E-04
7GO:0009570: chloroplast stroma2.26E-03
8GO:0009504: cell plate3.59E-03
9GO:0031201: SNARE complex7.69E-03
10GO:0012505: endomembrane system1.26E-02
11GO:0005623: cell1.54E-02
12GO:0009524: phragmoplast1.56E-02
13GO:0005622: intracellular1.64E-02
14GO:0005759: mitochondrial matrix1.77E-02
15GO:0031969: chloroplast membrane3.01E-02
16GO:0005743: mitochondrial inner membrane3.77E-02
17GO:0009535: chloroplast thylakoid membrane4.17E-02
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Gene type



Gene DE type