co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G62100

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0043392: negative regulation of DNA binding	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
6	GO:0017038: protein import	0.00E+00
7	GO:1900033: negative regulation of trichome patterning	7.22E-06
8	GO:0046620: regulation of organ growth	1.64E-05
9	GO:0048629: trichome patterning	9.64E-05
10	GO:0009733: response to auxin	1.80E-04
11	GO:0030488: tRNA methylation	2.88E-04
12	GO:0010480: microsporocyte differentiation	4.02E-04
13	GO:0015904: tetracycline transport	4.02E-04
14	GO:0000025: maltose catabolic process	4.02E-04
15	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.02E-04
16	GO:0030198: extracellular matrix organization	4.02E-04
17	GO:0046520: sphingoid biosynthetic process	4.02E-04
18	GO:0009741: response to brassinosteroid	5.16E-04
19	GO:0009734: auxin-activated signaling pathway	5.35E-04
20	GO:0032502: developmental process	7.34E-04
21	GO:0009638: phototropism	8.05E-04
22	GO:0018026: peptidyl-lysine monomethylation	8.71E-04
23	GO:0071497: cellular response to freezing	8.71E-04
24	GO:0009786: regulation of asymmetric cell division	8.71E-04
25	GO:0031648: protein destabilization	8.71E-04
26	GO:0006568: tryptophan metabolic process	8.71E-04
27	GO:2000123: positive regulation of stomatal complex development	8.71E-04
28	GO:0006741: NADP biosynthetic process	8.71E-04
29	GO:0009416: response to light stimulus	8.94E-04
30	GO:0009641: shade avoidance	9.37E-04
31	GO:0005983: starch catabolic process	1.23E-03
32	GO:0010102: lateral root morphogenesis	1.40E-03
33	GO:0071398: cellular response to fatty acid	1.41E-03
34	GO:0019674: NAD metabolic process	1.41E-03
35	GO:0033591: response to L-ascorbic acid	1.41E-03
36	GO:0019363: pyridine nucleotide biosynthetic process	2.04E-03
37	GO:0010371: regulation of gibberellin biosynthetic process	2.04E-03
38	GO:0009102: biotin biosynthetic process	2.04E-03
39	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.04E-03
40	GO:1990019: protein storage vacuole organization	2.04E-03
41	GO:0010306: rhamnogalacturonan II biosynthetic process	2.04E-03
42	GO:0006631: fatty acid metabolic process	2.53E-03
43	GO:0040008: regulation of growth	2.64E-03
44	GO:0010431: seed maturation	2.65E-03
45	GO:0045892: negative regulation of transcription, DNA-templated	2.67E-03
46	GO:0009755: hormone-mediated signaling pathway	2.74E-03
47	GO:1901141: regulation of lignin biosynthetic process	2.74E-03
48	GO:0010109: regulation of photosynthesis	2.74E-03
49	GO:0042274: ribosomal small subunit biogenesis	2.74E-03
50	GO:2000038: regulation of stomatal complex development	2.74E-03
51	GO:0009686: gibberellin biosynthetic process	3.16E-03
52	GO:0048497: maintenance of floral organ identity	3.51E-03
53	GO:0010438: cellular response to sulfur starvation	3.51E-03
54	GO:0010375: stomatal complex patterning	3.51E-03
55	GO:0016131: brassinosteroid metabolic process	3.51E-03
56	GO:0045487: gibberellin catabolic process	3.51E-03
57	GO:0010268: brassinosteroid homeostasis	4.34E-03
58	GO:0010405: arabinogalactan protein metabolic process	4.35E-03
59	GO:0042549: photosystem II stabilization	4.35E-03
60	GO:0009959: negative gravitropism	4.35E-03
61	GO:0010358: leaf shaping	4.35E-03
62	GO:0016554: cytidine to uridine editing	4.35E-03
63	GO:0009913: epidermal cell differentiation	4.35E-03
64	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.35E-03
65	GO:1902456: regulation of stomatal opening	4.35E-03
66	GO:0042793: transcription from plastid promoter	4.35E-03
67	GO:0009082: branched-chain amino acid biosynthetic process	5.24E-03
68	GO:0006458: 'de novo' protein folding	5.24E-03
69	GO:0048509: regulation of meristem development	5.24E-03
70	GO:0009099: valine biosynthetic process	5.24E-03
71	GO:0042026: protein refolding	5.24E-03
72	GO:0031930: mitochondria-nucleus signaling pathway	5.24E-03
73	GO:0010583: response to cyclopentenone	5.73E-03
74	GO:1901657: glycosyl compound metabolic process	6.11E-03
75	GO:0010161: red light signaling pathway	6.19E-03
76	GO:0048437: floral organ development	6.19E-03
77	GO:0009690: cytokinin metabolic process	7.20E-03
78	GO:0006605: protein targeting	7.20E-03
79	GO:0009704: de-etiolation	7.20E-03
80	GO:2000070: regulation of response to water deprivation	7.20E-03
81	GO:0000105: histidine biosynthetic process	7.20E-03
82	GO:0009819: drought recovery	7.20E-03
83	GO:0006402: mRNA catabolic process	7.20E-03
84	GO:0010439: regulation of glucosinolate biosynthetic process	7.20E-03
85	GO:0010027: thylakoid membrane organization	7.77E-03
86	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.06E-03
87	GO:0009097: isoleucine biosynthetic process	8.26E-03
88	GO:0010100: negative regulation of photomorphogenesis	8.26E-03
89	GO:0006526: arginine biosynthetic process	8.26E-03
90	GO:0010099: regulation of photomorphogenesis	8.26E-03
91	GO:0006783: heme biosynthetic process	9.38E-03
92	GO:0000902: cell morphogenesis	9.38E-03
93	GO:0051865: protein autoubiquitination	9.38E-03
94	GO:0009098: leucine biosynthetic process	1.06E-02
95	GO:1900865: chloroplast RNA modification	1.06E-02
96	GO:0031425: chloroplast RNA processing	1.06E-02
97	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.18E-02
98	GO:0048829: root cap development	1.18E-02
99	GO:0016441: posttranscriptional gene silencing	1.18E-02
100	GO:0009867: jasmonic acid mediated signaling pathway	1.29E-02
101	GO:0009073: aromatic amino acid family biosynthetic process	1.30E-02
102	GO:0048229: gametophyte development	1.30E-02
103	GO:0010015: root morphogenesis	1.30E-02
104	GO:0009682: induced systemic resistance	1.30E-02
105	GO:0016042: lipid catabolic process	1.32E-02
106	GO:0034599: cellular response to oxidative stress	1.35E-02
107	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.44E-02
108	GO:0009739: response to gibberellin	1.49E-02
109	GO:0009753: response to jasmonic acid	1.54E-02
110	GO:0010628: positive regulation of gene expression	1.57E-02
111	GO:0006006: glucose metabolic process	1.57E-02
112	GO:2000028: regulation of photoperiodism, flowering	1.57E-02
113	GO:0010075: regulation of meristem growth	1.57E-02
114	GO:0009767: photosynthetic electron transport chain	1.57E-02
115	GO:0010588: cotyledon vascular tissue pattern formation	1.57E-02
116	GO:0009785: blue light signaling pathway	1.57E-02
117	GO:0009926: auxin polar transport	1.67E-02
118	GO:0009640: photomorphogenesis	1.67E-02
119	GO:0009934: regulation of meristem structural organization	1.71E-02
120	GO:0090351: seedling development	1.86E-02
121	GO:0019762: glucosinolate catabolic process	2.01E-02
122	GO:0000162: tryptophan biosynthetic process	2.01E-02
123	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.10E-02
124	GO:0005992: trehalose biosynthetic process	2.16E-02
125	GO:0010187: negative regulation of seed germination	2.16E-02
126	GO:0080147: root hair cell development	2.16E-02
127	GO:0016114: terpenoid biosynthetic process	2.48E-02
128	GO:0048511: rhythmic process	2.48E-02
129	GO:0061077: chaperone-mediated protein folding	2.48E-02
130	GO:0048278: vesicle docking	2.48E-02
131	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.64E-02
132	GO:0031348: negative regulation of defense response	2.64E-02
133	GO:0009625: response to insect	2.81E-02
134	GO:0009693: ethylene biosynthetic process	2.81E-02
135	GO:0071215: cellular response to abscisic acid stimulus	2.81E-02
136	GO:0010082: regulation of root meristem growth	2.81E-02
137	GO:0045492: xylan biosynthetic process	2.99E-02
138	GO:0080022: primary root development	3.34E-02
139	GO:0010087: phloem or xylem histogenesis	3.34E-02
140	GO:0010118: stomatal movement	3.34E-02
141	GO:0048653: anther development	3.34E-02
142	GO:0009742: brassinosteroid mediated signaling pathway	3.40E-02
143	GO:0006662: glycerol ether metabolic process	3.53E-02
144	GO:0010182: sugar mediated signaling pathway	3.53E-02
145	GO:0048868: pollen tube development	3.53E-02
146	GO:0009960: endosperm development	3.53E-02
147	GO:0010305: leaf vascular tissue pattern formation	3.53E-02
148	GO:0006520: cellular amino acid metabolic process	3.53E-02
149	GO:0048544: recognition of pollen	3.71E-02
150	GO:0061025: membrane fusion	3.71E-02
151	GO:0042752: regulation of circadian rhythm	3.71E-02
152	GO:0009646: response to absence of light	3.71E-02
153	GO:0048825: cotyledon development	3.90E-02
154	GO:0000302: response to reactive oxygen species	4.09E-02
155	GO:0016132: brassinosteroid biosynthetic process	4.09E-02
156	GO:0071554: cell wall organization or biogenesis	4.09E-02
157	GO:0016032: viral process	4.29E-02
158	GO:0016567: protein ubiquitination	4.30E-02
159	GO:0009845: seed germination	4.33E-02
160	GO:0010090: trichome morphogenesis	4.49E-02
161	GO:0009567: double fertilization forming a zygote and endosperm	4.69E-02
162	GO:0016125: sterol metabolic process	4.69E-02
163	GO:0010252: auxin homeostasis	4.69E-02
164	GO:0007165: signal transduction	4.80E-02
165	GO:0007267: cell-cell signaling	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0004076: biotin synthase activity	0.00E+00
4	GO:0071633: dihydroceramidase activity	0.00E+00
5	GO:0019203: carbohydrate phosphatase activity	4.02E-04
6	GO:0008395: steroid hydroxylase activity	4.02E-04
7	GO:0042736: NADH kinase activity	4.02E-04
8	GO:0010012: steroid 22-alpha hydroxylase activity	4.02E-04
9	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.02E-04
10	GO:0000170: sphingosine hydroxylase activity	4.02E-04
11	GO:0050139: nicotinate-N-glucosyltransferase activity	4.02E-04
12	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	4.02E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.02E-04
14	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.02E-04
15	GO:0050308: sugar-phosphatase activity	4.02E-04
16	GO:0010313: phytochrome binding	4.02E-04
17	GO:0004134: 4-alpha-glucanotransferase activity	4.02E-04
18	GO:0045543: gibberellin 2-beta-dioxygenase activity	8.71E-04
19	GO:0042284: sphingolipid delta-4 desaturase activity	8.71E-04
20	GO:0008493: tetracycline transporter activity	8.71E-04
21	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.41E-03
22	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.41E-03
23	GO:0005504: fatty acid binding	1.41E-03
24	GO:0052656: L-isoleucine transaminase activity	2.04E-03
25	GO:0052654: L-leucine transaminase activity	2.04E-03
26	GO:0052655: L-valine transaminase activity	2.04E-03
27	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.04E-03
28	GO:0005528: FK506 binding	2.18E-03
29	GO:0046556: alpha-L-arabinofuranosidase activity	2.74E-03
30	GO:0016279: protein-lysine N-methyltransferase activity	2.74E-03
31	GO:0004084: branched-chain-amino-acid transaminase activity	2.74E-03
32	GO:0019199: transmembrane receptor protein kinase activity	2.74E-03
33	GO:0045430: chalcone isomerase activity	2.74E-03
34	GO:0004871: signal transducer activity	2.82E-03
35	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.51E-03
36	GO:0016688: L-ascorbate peroxidase activity	4.35E-03
37	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	4.35E-03
38	GO:2001070: starch binding	4.35E-03
39	GO:0080030: methyl indole-3-acetate esterase activity	4.35E-03
40	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.35E-03
41	GO:0004709: MAP kinase kinase kinase activity	4.35E-03
42	GO:0004130: cytochrome-c peroxidase activity	4.35E-03
43	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.24E-03
44	GO:0016832: aldehyde-lyase activity	5.24E-03
45	GO:0005200: structural constituent of cytoskeleton	6.91E-03
46	GO:0003951: NAD+ kinase activity	8.26E-03
47	GO:0008173: RNA methyltransferase activity	8.26E-03
48	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.87E-03
49	GO:0102483: scopolin beta-glucosidase activity	9.16E-03
50	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	9.38E-03
51	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	9.38E-03
52	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.01E-02
53	GO:0004805: trehalose-phosphatase activity	1.18E-02
54	GO:0030234: enzyme regulator activity	1.18E-02
55	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.18E-02
56	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.18E-02
57	GO:0044183: protein binding involved in protein folding	1.30E-02
58	GO:0008422: beta-glucosidase activity	1.41E-02
59	GO:0009055: electron carrier activity	1.54E-02
60	GO:0004519: endonuclease activity	1.57E-02
61	GO:0008146: sulfotransferase activity	1.86E-02
62	GO:0003712: transcription cofactor activity	1.86E-02
63	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.95E-02
64	GO:0051536: iron-sulfur cluster binding	2.16E-02
65	GO:0031418: L-ascorbic acid binding	2.16E-02
66	GO:0016788: hydrolase activity, acting on ester bonds	2.31E-02
67	GO:0005345: purine nucleobase transmembrane transporter activity	2.32E-02
68	GO:0016298: lipase activity	2.33E-02
69	GO:0004176: ATP-dependent peptidase activity	2.48E-02
70	GO:0033612: receptor serine/threonine kinase binding	2.48E-02
71	GO:0003964: RNA-directed DNA polymerase activity	2.48E-02
72	GO:0010333: terpene synthase activity	2.48E-02
73	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.60E-02
74	GO:0003727: single-stranded RNA binding	2.99E-02
75	GO:0016874: ligase activity	3.02E-02
76	GO:0047134: protein-disulfide reductase activity	3.16E-02
77	GO:0015035: protein disulfide oxidoreductase activity	3.30E-02
78	GO:0052689: carboxylic ester hydrolase activity	3.34E-02
79	GO:0044212: transcription regulatory region DNA binding	3.40E-02
80	GO:0001085: RNA polymerase II transcription factor binding	3.53E-02
81	GO:0004791: thioredoxin-disulfide reductase activity	3.71E-02
82	GO:0042803: protein homodimerization activity	3.90E-02
83	GO:0019901: protein kinase binding	3.90E-02
84	GO:0004518: nuclease activity	4.29E-02
85	GO:0000156: phosphorelay response regulator activity	4.49E-02
86	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.49E-02
87	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.56E-02
88	GO:0016759: cellulose synthase activity	4.69E-02
89	GO:0008237: metallopeptidase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009654: photosystem II oxygen evolving complex	2.34E-04
2	GO:0019898: extrinsic component of membrane	6.20E-04
3	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.71E-04
4	GO:0030139: endocytic vesicle	1.41E-03
5	GO:0032585: multivesicular body membrane	2.04E-03
6	GO:0009544: chloroplast ATP synthase complex	2.74E-03
7	GO:0009986: cell surface	6.19E-03
8	GO:0009507: chloroplast	6.26E-03
9	GO:0009501: amyloplast	7.20E-03
10	GO:0009543: chloroplast thylakoid lumen	8.58E-03
11	GO:0010494: cytoplasmic stress granule	9.38E-03
12	GO:0009534: chloroplast thylakoid	1.42E-02
13	GO:0009508: plastid chromosome	1.57E-02
14	GO:0005578: proteinaceous extracellular matrix	1.57E-02
15	GO:0030095: chloroplast photosystem II	1.71E-02
16	GO:0009570: chloroplast stroma	2.41E-02
17	GO:0010008: endosome membrane	2.75E-02
18	GO:0015629: actin cytoskeleton	2.81E-02
19	GO:0012505: endomembrane system	3.11E-02
20	GO:0005770: late endosome	3.53E-02
21	GO:0009504: cell plate	3.90E-02
22	GO:0009295: nucleoid	4.90E-02