co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G61900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance	0.00E+00
2	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
3	GO:0090359: negative regulation of abscisic acid biosynthetic process	0.00E+00
4	GO:0015690: aluminum cation transport	0.00E+00
5	GO:1900367: positive regulation of defense response to insect	0.00E+00
6	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
7	GO:0045730: respiratory burst	0.00E+00
8	GO:0010324: membrane invagination	0.00E+00
9	GO:0071327: cellular response to trehalose stimulus	0.00E+00
10	GO:0043048: dolichyl monophosphate biosynthetic process	0.00E+00
11	GO:0009697: salicylic acid biosynthetic process	1.53E-06
12	GO:0010200: response to chitin	7.30E-06
13	GO:0031348: negative regulation of defense response	1.29E-05
14	GO:0009625: response to insect	1.56E-05
15	GO:0010112: regulation of systemic acquired resistance	2.41E-05
16	GO:0006952: defense response	2.86E-05
17	GO:0006979: response to oxidative stress	6.78E-05
18	GO:0010150: leaf senescence	6.81E-05
19	GO:0080142: regulation of salicylic acid biosynthetic process	7.90E-05
20	GO:0060548: negative regulation of cell death	7.90E-05
21	GO:0010225: response to UV-C	1.23E-04
22	GO:0009643: photosynthetic acclimation	1.78E-04
23	GO:0071456: cellular response to hypoxia	2.39E-04
24	GO:0042372: phylloquinone biosynthetic process	2.41E-04
25	GO:0015760: glucose-6-phosphate transport	3.57E-04
26	GO:0019567: arabinose biosynthetic process	3.57E-04
27	GO:0010421: hydrogen peroxide-mediated programmed cell death	3.57E-04
28	GO:0033306: phytol metabolic process	3.57E-04
29	GO:0009700: indole phytoalexin biosynthetic process	3.57E-04
30	GO:1901183: positive regulation of camalexin biosynthetic process	3.57E-04
31	GO:0042759: long-chain fatty acid biosynthetic process	3.57E-04
32	GO:1990542: mitochondrial transmembrane transport	3.57E-04
33	GO:0048508: embryonic meristem development	3.57E-04
34	GO:0051938: L-glutamate import	3.57E-04
35	GO:0009646: response to absence of light	4.53E-04
36	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.81E-04
37	GO:0006486: protein glycosylation	5.51E-04
38	GO:0009617: response to bacterium	6.02E-04
39	GO:0009611: response to wounding	6.34E-04
40	GO:0050832: defense response to fungus	6.78E-04
41	GO:0044419: interspecies interaction between organisms	7.77E-04
42	GO:0010115: regulation of abscisic acid biosynthetic process	7.77E-04
43	GO:0009945: radial axis specification	7.77E-04
44	GO:0015712: hexose phosphate transport	7.77E-04
45	GO:0051258: protein polymerization	7.77E-04
46	GO:0010271: regulation of chlorophyll catabolic process	7.77E-04
47	GO:0043091: L-arginine import	7.77E-04
48	GO:0015914: phospholipid transport	7.77E-04
49	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	7.77E-04
50	GO:0015802: basic amino acid transport	7.77E-04
51	GO:0010618: aerenchyma formation	7.77E-04
52	GO:0080181: lateral root branching	7.77E-04
53	GO:0009816: defense response to bacterium, incompatible interaction	9.26E-04
54	GO:0006468: protein phosphorylation	9.39E-04
55	GO:0055046: microgametogenesis	1.18E-03
56	GO:0015695: organic cation transport	1.26E-03
57	GO:0015714: phosphoenolpyruvate transport	1.26E-03
58	GO:0010498: proteasomal protein catabolic process	1.26E-03
59	GO:1900055: regulation of leaf senescence	1.26E-03
60	GO:0006954: inflammatory response	1.26E-03
61	GO:0034051: negative regulation of plant-type hypersensitive response	1.26E-03
62	GO:1900140: regulation of seedling development	1.26E-03
63	GO:0035436: triose phosphate transmembrane transport	1.26E-03
64	GO:0010119: regulation of stomatal movement	1.44E-03
65	GO:0015696: ammonium transport	1.81E-03
66	GO:0002679: respiratory burst involved in defense response	1.81E-03
67	GO:0051289: protein homotetramerization	1.81E-03
68	GO:0046513: ceramide biosynthetic process	1.81E-03
69	GO:0046836: glycolipid transport	1.81E-03
70	GO:0048194: Golgi vesicle budding	1.81E-03
71	GO:2000377: regulation of reactive oxygen species metabolic process	1.83E-03
72	GO:0051707: response to other organism	2.24E-03
73	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.43E-03
74	GO:0072488: ammonium transmembrane transport	2.44E-03
75	GO:0033358: UDP-L-arabinose biosynthetic process	2.44E-03
76	GO:0010107: potassium ion import	2.44E-03
77	GO:0010508: positive regulation of autophagy	2.44E-03
78	GO:0015713: phosphoglycerate transport	2.44E-03
79	GO:1901141: regulation of lignin biosynthetic process	2.44E-03
80	GO:0010109: regulation of photosynthesis	2.44E-03
81	GO:0045227: capsule polysaccharide biosynthetic process	2.44E-03
82	GO:0010483: pollen tube reception	2.44E-03
83	GO:0048638: regulation of developmental growth	2.44E-03
84	GO:0009652: thigmotropism	2.44E-03
85	GO:0006470: protein dephosphorylation	2.66E-03
86	GO:0009751: response to salicylic acid	2.68E-03
87	GO:0042742: defense response to bacterium	2.84E-03
88	GO:0034052: positive regulation of plant-type hypersensitive response	3.11E-03
89	GO:0009164: nucleoside catabolic process	3.11E-03
90	GO:0042391: regulation of membrane potential	3.38E-03
91	GO:0010118: stomatal movement	3.38E-03
92	GO:1900425: negative regulation of defense response to bacterium	3.85E-03
93	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.85E-03
94	GO:0009117: nucleotide metabolic process	3.85E-03
95	GO:0006574: valine catabolic process	3.85E-03
96	GO:0002238: response to molecule of fungal origin	3.85E-03
97	GO:0010942: positive regulation of cell death	3.85E-03
98	GO:0010405: arabinogalactan protein metabolic process	3.85E-03
99	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.85E-03
100	GO:0010193: response to ozone	4.50E-03
101	GO:0009094: L-phenylalanine biosynthetic process	4.64E-03
102	GO:0009612: response to mechanical stimulus	4.64E-03
103	GO:0009942: longitudinal axis specification	4.64E-03
104	GO:0010310: regulation of hydrogen peroxide metabolic process	4.64E-03
105	GO:0016567: protein ubiquitination	4.99E-03
106	GO:0009624: response to nematode	5.14E-03
107	GO:0007165: signal transduction	5.20E-03
108	GO:0071446: cellular response to salicylic acid stimulus	5.48E-03
109	GO:1900056: negative regulation of leaf senescence	5.48E-03
110	GO:0050829: defense response to Gram-negative bacterium	5.48E-03
111	GO:0010161: red light signaling pathway	5.48E-03
112	GO:0098869: cellular oxidant detoxification	5.48E-03
113	GO:0009737: response to abscisic acid	5.48E-03
114	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.37E-03
115	GO:0009819: drought recovery	6.37E-03
116	GO:0030091: protein repair	6.37E-03
117	GO:0043068: positive regulation of programmed cell death	6.37E-03
118	GO:0009627: systemic acquired resistance	7.28E-03
119	GO:0010120: camalexin biosynthetic process	7.30E-03
120	GO:0030968: endoplasmic reticulum unfolded protein response	7.30E-03
121	GO:0009808: lignin metabolic process	7.30E-03
122	GO:0009051: pentose-phosphate shunt, oxidative branch	8.29E-03
123	GO:0006098: pentose-phosphate shunt	8.29E-03
124	GO:0051865: protein autoubiquitination	8.29E-03
125	GO:0019432: triglyceride biosynthetic process	8.29E-03
126	GO:0090333: regulation of stomatal closure	8.29E-03
127	GO:0046916: cellular transition metal ion homeostasis	8.29E-03
128	GO:0009056: catabolic process	8.29E-03
129	GO:0009832: plant-type cell wall biogenesis	8.94E-03
130	GO:0048354: mucilage biosynthetic process involved in seed coat development	9.31E-03
131	GO:0010380: regulation of chlorophyll biosynthetic process	9.31E-03
132	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	9.31E-03
133	GO:1900426: positive regulation of defense response to bacterium	9.31E-03
134	GO:0032259: methylation	9.91E-03
135	GO:0007064: mitotic sister chromatid cohesion	1.04E-02
136	GO:0006032: chitin catabolic process	1.04E-02
137	GO:0072593: reactive oxygen species metabolic process	1.15E-02
138	GO:1903507: negative regulation of nucleic acid-templated transcription	1.15E-02
139	GO:0048229: gametophyte development	1.15E-02
140	GO:0012501: programmed cell death	1.27E-02
141	GO:0002213: defense response to insect	1.27E-02
142	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.27E-02
143	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	1.27E-02
144	GO:0006006: glucose metabolic process	1.39E-02
145	GO:0002237: response to molecule of bacterial origin	1.51E-02
146	GO:0009266: response to temperature stimulus	1.51E-02
147	GO:0009409: response to cold	1.56E-02
148	GO:0006855: drug transmembrane transport	1.63E-02
149	GO:0009969: xyloglucan biosynthetic process	1.64E-02
150	GO:0009225: nucleotide-sugar metabolic process	1.64E-02
151	GO:0031347: regulation of defense response	1.69E-02
152	GO:0009664: plant-type cell wall organization	1.76E-02
153	GO:0009809: lignin biosynthetic process	1.89E-02
154	GO:0003333: amino acid transmembrane transport	2.18E-02
155	GO:0016998: cell wall macromolecule catabolic process	2.18E-02
156	GO:0048511: rhythmic process	2.18E-02
157	GO:0016226: iron-sulfur cluster assembly	2.33E-02
158	GO:0080167: response to karrikin	2.36E-02
159	GO:0009738: abscisic acid-activated signaling pathway	2.38E-02
160	GO:0009626: plant-type hypersensitive response	2.38E-02
161	GO:0009620: response to fungus	2.46E-02
162	GO:0006012: galactose metabolic process	2.48E-02
163	GO:0046777: protein autophosphorylation	2.57E-02
164	GO:0010584: pollen exine formation	2.63E-02
165	GO:0019722: calcium-mediated signaling	2.63E-02
166	GO:0009561: megagametogenesis	2.63E-02
167	GO:0042147: retrograde transport, endosome to Golgi	2.79E-02
168	GO:0070417: cellular response to cold	2.79E-02
169	GO:0042631: cellular response to water deprivation	2.95E-02
170	GO:0000271: polysaccharide biosynthetic process	2.95E-02
171	GO:0000413: protein peptidyl-prolyl isomerization	2.95E-02
172	GO:0045489: pectin biosynthetic process	3.11E-02
173	GO:0006885: regulation of pH	3.11E-02
174	GO:0010197: polar nucleus fusion	3.11E-02
175	GO:0009749: response to glucose	3.44E-02
176	GO:0008654: phospholipid biosynthetic process	3.44E-02
177	GO:0002229: defense response to oomycetes	3.61E-02
178	GO:0000302: response to reactive oxygen species	3.61E-02
179	GO:0006891: intra-Golgi vesicle-mediated transport	3.61E-02
180	GO:0019761: glucosinolate biosynthetic process	3.78E-02
181	GO:0009408: response to heat	3.83E-02
182	GO:0009790: embryo development	3.92E-02
183	GO:0009753: response to jasmonic acid	4.18E-02
184	GO:0006904: vesicle docking involved in exocytosis	4.32E-02
185	GO:0016310: phosphorylation	4.69E-02
186	GO:0001666: response to hypoxia	4.69E-02
187	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
2	GO:0004168: dolichol kinase activity	0.00E+00
3	GO:0016301: kinase activity	4.87E-06
4	GO:0004674: protein serine/threonine kinase activity	1.77E-04
5	GO:0004012: phospholipid-translocating ATPase activity	2.41E-04
6	GO:0008909: isochorismate synthase activity	3.57E-04
7	GO:0019707: protein-cysteine S-acyltransferase activity	3.57E-04
8	GO:0031127: alpha-(1,2)-fucosyltransferase activity	3.57E-04
9	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.92E-04
10	GO:0019901: protein kinase binding	4.97E-04
11	GO:0005509: calcium ion binding	7.47E-04
12	GO:0015152: glucose-6-phosphate transmembrane transporter activity	7.77E-04
13	GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity	7.77E-04
14	GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity	7.77E-04
15	GO:0001671: ATPase activator activity	7.77E-04
16	GO:0048531: beta-1,3-galactosyltransferase activity	7.77E-04
17	GO:0004385: guanylate kinase activity	7.77E-04
18	GO:0050291: sphingosine N-acyltransferase activity	7.77E-04
19	GO:0047364: desulfoglucosinolate sulfotransferase activity	7.77E-04
20	GO:0004568: chitinase activity	7.93E-04
21	GO:0008171: O-methyltransferase activity	7.93E-04
22	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.18E-03
23	GO:0042409: caffeoyl-CoA O-methyltransferase activity	1.26E-03
24	GO:0071917: triose-phosphate transmembrane transporter activity	1.26E-03
25	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.26E-03
26	GO:0030553: cGMP binding	1.49E-03
27	GO:0030552: cAMP binding	1.49E-03
28	GO:0015181: arginine transmembrane transporter activity	1.81E-03
29	GO:0017077: oxidative phosphorylation uncoupler activity	1.81E-03
30	GO:0015189: L-lysine transmembrane transporter activity	1.81E-03
31	GO:0017089: glycolipid transporter activity	1.81E-03
32	GO:0004842: ubiquitin-protein transferase activity	1.96E-03
33	GO:0005216: ion channel activity	2.03E-03
34	GO:0033612: receptor serine/threonine kinase binding	2.23E-03
35	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.23E-03
36	GO:0005313: L-glutamate transmembrane transporter activity	2.44E-03
37	GO:0015120: phosphoglycerate transmembrane transporter activity	2.44E-03
38	GO:0050373: UDP-arabinose 4-epimerase activity	2.44E-03
39	GO:0047769: arogenate dehydratase activity	2.44E-03
40	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.44E-03
41	GO:0004664: prephenate dehydratase activity	2.44E-03
42	GO:0051861: glycolipid binding	2.44E-03
43	GO:0005524: ATP binding	3.10E-03
44	GO:0005496: steroid binding	3.11E-03
45	GO:0047631: ADP-ribose diphosphatase activity	3.11E-03
46	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.11E-03
47	GO:0030551: cyclic nucleotide binding	3.38E-03
48	GO:0005249: voltage-gated potassium channel activity	3.38E-03
49	GO:0000210: NAD+ diphosphatase activity	3.85E-03
50	GO:0008519: ammonium transmembrane transporter activity	3.85E-03
51	GO:0004605: phosphatidate cytidylyltransferase activity	3.85E-03
52	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.85E-03
53	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.64E-03
54	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	4.64E-03
55	GO:0003950: NAD+ ADP-ribosyltransferase activity	4.64E-03
56	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.64E-03
57	GO:0005261: cation channel activity	4.64E-03
58	GO:0003978: UDP-glucose 4-epimerase activity	4.64E-03
59	GO:0004144: diacylglycerol O-acyltransferase activity	4.64E-03
60	GO:0019900: kinase binding	4.64E-03
61	GO:0004197: cysteine-type endopeptidase activity	4.81E-03
62	GO:0043531: ADP binding	4.85E-03
63	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	5.48E-03
64	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	5.80E-03
65	GO:0004033: aldo-keto reductase (NADP) activity	6.37E-03
66	GO:0016758: transferase activity, transferring hexosyl groups	6.62E-03
67	GO:0004806: triglyceride lipase activity	7.67E-03
68	GO:0004721: phosphoprotein phosphatase activity	7.67E-03
69	GO:0008417: fucosyltransferase activity	8.29E-03
70	GO:0004722: protein serine/threonine phosphatase activity	8.85E-03
71	GO:0015238: drug transmembrane transporter activity	8.94E-03
72	GO:0015174: basic amino acid transmembrane transporter activity	9.31E-03
73	GO:0047617: acyl-CoA hydrolase activity	9.31E-03
74	GO:0015297: antiporter activity	9.74E-03
75	GO:0015020: glucuronosyltransferase activity	1.04E-02
76	GO:0050661: NADP binding	1.23E-02
77	GO:0008378: galactosyltransferase activity	1.27E-02
78	GO:0004521: endoribonuclease activity	1.27E-02
79	GO:0005315: inorganic phosphate transmembrane transporter activity	1.39E-02
80	GO:0008146: sulfotransferase activity	1.64E-02
81	GO:0004190: aspartic-type endopeptidase activity	1.64E-02
82	GO:0004672: protein kinase activity	1.82E-02
83	GO:0003714: transcription corepressor activity	1.90E-02
84	GO:0003954: NADH dehydrogenase activity	1.90E-02
85	GO:0043424: protein histidine kinase binding	2.04E-02
86	GO:0051087: chaperone binding	2.04E-02
87	GO:0004707: MAP kinase activity	2.18E-02
88	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.33E-02
89	GO:0004499: N,N-dimethylaniline monooxygenase activity	2.63E-02
90	GO:0005451: monovalent cation:proton antiporter activity	2.95E-02
91	GO:0005199: structural constituent of cell wall	3.11E-02
92	GO:0015299: solute:proton antiporter activity	3.27E-02
93	GO:0010181: FMN binding	3.27E-02
94	GO:0030246: carbohydrate binding	3.85E-02
95	GO:0015385: sodium:proton antiporter activity	3.96E-02
96	GO:0043565: sequence-specific DNA binding	3.97E-02
97	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.32E-02
98	GO:0016597: amino acid binding	4.50E-02
99	GO:0005516: calmodulin binding	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	3.22E-11
2	GO:0016021: integral component of membrane	7.34E-07
3	GO:0005901: caveola	5.76E-06
4	GO:0000138: Golgi trans cisterna	3.57E-04
5	GO:0031304: intrinsic component of mitochondrial inner membrane	7.77E-04
6	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.26E-03
7	GO:0008287: protein serine/threonine phosphatase complex	1.26E-03
8	GO:0009530: primary cell wall	1.26E-03
9	GO:0070062: extracellular exosome	1.81E-03
10	GO:0016363: nuclear matrix	4.64E-03
11	GO:0032580: Golgi cisterna membrane	5.46E-03
12	GO:0031012: extracellular matrix	1.39E-02
13	GO:0031225: anchored component of membrane	1.62E-02
14	GO:0030176: integral component of endoplasmic reticulum membrane	1.64E-02
15	GO:0005769: early endosome	1.77E-02
16	GO:0005758: mitochondrial intermembrane space	1.90E-02
17	GO:0009506: plasmodesma	2.37E-02
18	GO:0005777: peroxisome	3.06E-02
19	GO:0005770: late endosome	3.11E-02
20	GO:0000145: exocyst	3.78E-02
21	GO:0005774: vacuolar membrane	3.91E-02
22	GO:0000139: Golgi membrane	4.17E-02