co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G61412

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0001778: plasma membrane repair	0.00E+00
3	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
4	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:0046620: regulation of organ growth	7.22E-06
7	GO:0009733: response to auxin	3.12E-05
8	GO:0009734: auxin-activated signaling pathway	1.65E-04
9	GO:0040008: regulation of growth	2.22E-04
10	GO:0034757: negative regulation of iron ion transport	2.89E-04
11	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.89E-04
12	GO:0051382: kinetochore assembly	2.89E-04
13	GO:0006285: base-excision repair, AP site formation	2.89E-04
14	GO:0009090: homoserine biosynthetic process	2.89E-04
15	GO:0009786: regulation of asymmetric cell division	6.34E-04
16	GO:0046740: transport of virus in host, cell to cell	6.34E-04
17	GO:0031297: replication fork processing	6.34E-04
18	GO:0010271: regulation of chlorophyll catabolic process	6.34E-04
19	GO:1900033: negative regulation of trichome patterning	6.34E-04
20	GO:0010582: floral meristem determinacy	7.74E-04
21	GO:0071398: cellular response to fatty acid	1.03E-03
22	GO:0045910: negative regulation of DNA recombination	1.03E-03
23	GO:0033591: response to L-ascorbic acid	1.03E-03
24	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	1.03E-03
25	GO:0080117: secondary growth	1.03E-03
26	GO:0009067: aspartate family amino acid biosynthetic process	1.47E-03
27	GO:0010371: regulation of gibberellin biosynthetic process	1.47E-03
28	GO:0032456: endocytic recycling	1.47E-03
29	GO:0034059: response to anoxia	1.47E-03
30	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.47E-03
31	GO:1990019: protein storage vacuole organization	1.47E-03
32	GO:0010306: rhamnogalacturonan II biosynthetic process	1.47E-03
33	GO:0006612: protein targeting to membrane	1.47E-03
34	GO:0009926: auxin polar transport	1.51E-03
35	GO:0010431: seed maturation	1.64E-03
36	GO:0071215: cellular response to abscisic acid stimulus	1.95E-03
37	GO:0009755: hormone-mediated signaling pathway	1.97E-03
38	GO:0048629: trichome patterning	1.97E-03
39	GO:0042274: ribosomal small subunit biogenesis	1.97E-03
40	GO:0006284: base-excision repair	2.12E-03
41	GO:0010087: phloem or xylem histogenesis	2.48E-03
42	GO:0010438: cellular response to sulfur starvation	2.52E-03
43	GO:0010158: abaxial cell fate specification	2.52E-03
44	GO:0009696: salicylic acid metabolic process	2.52E-03
45	GO:0045487: gibberellin catabolic process	2.52E-03
46	GO:0080110: sporopollenin biosynthetic process	2.52E-03
47	GO:0016131: brassinosteroid metabolic process	2.52E-03
48	GO:0009741: response to brassinosteroid	2.67E-03
49	GO:0010268: brassinosteroid homeostasis	2.67E-03
50	GO:0010358: leaf shaping	3.11E-03
51	GO:1902456: regulation of stomatal opening	3.11E-03
52	GO:0048831: regulation of shoot system development	3.11E-03
53	GO:0003006: developmental process involved in reproduction	3.11E-03
54	GO:0009088: threonine biosynthetic process	3.74E-03
55	GO:0031930: mitochondria-nucleus signaling pathway	3.74E-03
56	GO:0009612: response to mechanical stimulus	3.74E-03
57	GO:0009082: branched-chain amino acid biosynthetic process	3.74E-03
58	GO:0048509: regulation of meristem development	3.74E-03
59	GO:0009099: valine biosynthetic process	3.74E-03
60	GO:0030488: tRNA methylation	3.74E-03
61	GO:0000712: resolution of meiotic recombination intermediates	4.41E-03
62	GO:0010050: vegetative phase change	4.41E-03
63	GO:0009819: drought recovery	5.12E-03
64	GO:0006402: mRNA catabolic process	5.12E-03
65	GO:0010439: regulation of glucosinolate biosynthetic process	5.12E-03
66	GO:0009850: auxin metabolic process	5.12E-03
67	GO:0009690: cytokinin metabolic process	5.12E-03
68	GO:0009704: de-etiolation	5.12E-03
69	GO:2000070: regulation of response to water deprivation	5.12E-03
70	GO:0007129: synapsis	5.87E-03
71	GO:0009657: plastid organization	5.87E-03
72	GO:0009097: isoleucine biosynthetic process	5.87E-03
73	GO:0009051: pentose-phosphate shunt, oxidative branch	6.65E-03
74	GO:0006098: pentose-phosphate shunt	6.65E-03
75	GO:0048507: meristem development	6.65E-03
76	GO:0000373: Group II intron splicing	6.65E-03
77	GO:0009098: leucine biosynthetic process	7.48E-03
78	GO:0010018: far-red light signaling pathway	7.48E-03
79	GO:0009086: methionine biosynthetic process	7.48E-03
80	GO:0009867: jasmonic acid mediated signaling pathway	7.88E-03
81	GO:0048829: root cap development	8.33E-03
82	GO:0006298: mismatch repair	8.33E-03
83	GO:0009299: mRNA transcription	8.33E-03
84	GO:0009870: defense response signaling pathway, resistance gene-dependent	8.33E-03
85	GO:0009682: induced systemic resistance	9.22E-03
86	GO:0009089: lysine biosynthetic process via diaminopimelate	9.22E-03
87	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.01E-02
88	GO:0042546: cell wall biogenesis	1.06E-02
89	GO:0009725: response to hormone	1.11E-02
90	GO:0006094: gluconeogenesis	1.11E-02
91	GO:0009767: photosynthetic electron transport chain	1.11E-02
92	GO:0010588: cotyledon vascular tissue pattern formation	1.11E-02
93	GO:0010102: lateral root morphogenesis	1.11E-02
94	GO:0006006: glucose metabolic process	1.11E-02
95	GO:2000028: regulation of photoperiodism, flowering	1.11E-02
96	GO:0048467: gynoecium development	1.21E-02
97	GO:0010020: chloroplast fission	1.21E-02
98	GO:0010207: photosystem II assembly	1.21E-02
99	GO:0019762: glucosinolate catabolic process	1.41E-02
100	GO:0042753: positive regulation of circadian rhythm	1.41E-02
101	GO:0005992: trehalose biosynthetic process	1.52E-02
102	GO:0080147: root hair cell development	1.52E-02
103	GO:0009909: regulation of flower development	1.52E-02
104	GO:0009416: response to light stimulus	1.56E-02
105	GO:0048511: rhythmic process	1.75E-02
106	GO:0016114: terpenoid biosynthetic process	1.75E-02
107	GO:0009625: response to insect	1.98E-02
108	GO:0009693: ethylene biosynthetic process	1.98E-02
109	GO:0009686: gibberellin biosynthetic process	1.98E-02
110	GO:0010082: regulation of root meristem growth	1.98E-02
111	GO:0009294: DNA mediated transformation	1.98E-02
112	GO:0045892: negative regulation of transcription, DNA-templated	2.03E-02
113	GO:0010584: pollen exine formation	2.10E-02
114	GO:0070417: cellular response to cold	2.23E-02
115	GO:0010118: stomatal movement	2.35E-02
116	GO:0080022: primary root development	2.35E-02
117	GO:0010182: sugar mediated signaling pathway	2.48E-02
118	GO:0048868: pollen tube development	2.48E-02
119	GO:0009960: endosperm development	2.48E-02
120	GO:0010305: leaf vascular tissue pattern formation	2.48E-02
121	GO:0042752: regulation of circadian rhythm	2.61E-02
122	GO:0048544: recognition of pollen	2.61E-02
123	GO:0009753: response to jasmonic acid	2.83E-02
124	GO:0009790: embryo development	2.87E-02
125	GO:0016132: brassinosteroid biosynthetic process	2.88E-02
126	GO:0071554: cell wall organization or biogenesis	2.88E-02
127	GO:0000302: response to reactive oxygen species	2.88E-02
128	GO:0032502: developmental process	3.02E-02
129	GO:0010583: response to cyclopentenone	3.02E-02
130	GO:0016032: viral process	3.02E-02
131	GO:0019761: glucosinolate biosynthetic process	3.02E-02
132	GO:0016125: sterol metabolic process	3.31E-02
133	GO:0009639: response to red or far red light	3.31E-02
134	GO:0051607: defense response to virus	3.60E-02
135	GO:0001666: response to hypoxia	3.75E-02
136	GO:0009615: response to virus	3.75E-02
137	GO:0010029: regulation of seed germination	3.90E-02
138	GO:0009617: response to bacterium	4.04E-02
139	GO:0009627: systemic acquired resistance	4.05E-02
140	GO:0010411: xyloglucan metabolic process	4.21E-02
141	GO:0048573: photoperiodism, flowering	4.21E-02
142	GO:0009817: defense response to fungus, incompatible interaction	4.53E-02
143	GO:0000160: phosphorelay signal transduction system	4.69E-02
144	GO:0010311: lateral root formation	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0080030: methyl indole-3-acetate esterase activity	1.27E-04
4	GO:0010012: steroid 22-alpha hydroxylase activity	2.89E-04
5	GO:0050139: nicotinate-N-glucosyltransferase activity	2.89E-04
6	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.89E-04
7	GO:0005227: calcium activated cation channel activity	2.89E-04
8	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.89E-04
9	GO:0008395: steroid hydroxylase activity	2.89E-04
10	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	2.89E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.89E-04
12	GO:0045543: gibberellin 2-beta-dioxygenase activity	6.34E-04
13	GO:0043425: bHLH transcription factor binding	6.34E-04
14	GO:0004412: homoserine dehydrogenase activity	6.34E-04
15	GO:1901981: phosphatidylinositol phosphate binding	6.34E-04
16	GO:0009884: cytokinin receptor activity	6.34E-04
17	GO:0005034: osmosensor activity	1.03E-03
18	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.03E-03
19	GO:0052654: L-leucine transaminase activity	1.47E-03
20	GO:0080031: methyl salicylate esterase activity	1.47E-03
21	GO:0052655: L-valine transaminase activity	1.47E-03
22	GO:0001872: (1->3)-beta-D-glucan binding	1.47E-03
23	GO:0004072: aspartate kinase activity	1.47E-03
24	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.47E-03
25	GO:0052656: L-isoleucine transaminase activity	1.47E-03
26	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.97E-03
27	GO:0019104: DNA N-glycosylase activity	1.97E-03
28	GO:0004084: branched-chain-amino-acid transaminase activity	1.97E-03
29	GO:0019199: transmembrane receptor protein kinase activity	1.97E-03
30	GO:0046556: alpha-L-arabinofuranosidase activity	1.97E-03
31	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.52E-03
32	GO:0008725: DNA-3-methyladenine glycosylase activity	2.52E-03
33	GO:0030983: mismatched DNA binding	3.11E-03
34	GO:0004332: fructose-bisphosphate aldolase activity	3.11E-03
35	GO:0004709: MAP kinase kinase kinase activity	3.11E-03
36	GO:0004130: cytochrome-c peroxidase activity	3.11E-03
37	GO:0016688: L-ascorbate peroxidase activity	3.11E-03
38	GO:0019900: kinase binding	3.74E-03
39	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.74E-03
40	GO:0016832: aldehyde-lyase activity	3.74E-03
41	GO:0051753: mannan synthase activity	3.74E-03
42	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.75E-03
43	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.65E-03
44	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.88E-03
45	GO:0030234: enzyme regulator activity	8.33E-03
46	GO:0004673: protein histidine kinase activity	8.33E-03
47	GO:0004805: trehalose-phosphatase activity	8.33E-03
48	GO:0050661: NADP binding	8.99E-03
49	GO:0043621: protein self-association	1.10E-02
50	GO:0000155: phosphorelay sensor kinase activity	1.11E-02
51	GO:0016788: hydrolase activity, acting on ester bonds	1.24E-02
52	GO:0008146: sulfotransferase activity	1.31E-02
53	GO:0051536: iron-sulfur cluster binding	1.52E-02
54	GO:0031418: L-ascorbic acid binding	1.52E-02
55	GO:0043424: protein histidine kinase binding	1.63E-02
56	GO:0010333: terpene synthase activity	1.75E-02
57	GO:0003964: RNA-directed DNA polymerase activity	1.75E-02
58	GO:0015035: protein disulfide oxidoreductase activity	2.02E-02
59	GO:0004871: signal transducer activity	2.12E-02
60	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.48E-02
61	GO:0001085: RNA polymerase II transcription factor binding	2.48E-02
62	GO:0050662: coenzyme binding	2.61E-02
63	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.80E-02
64	GO:0009055: electron carrier activity	2.83E-02
65	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.88E-02
66	GO:0004518: nuclease activity	3.02E-02
67	GO:0016759: cellulose synthase activity	3.31E-02
68	GO:0003684: damaged DNA binding	3.31E-02
69	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.38E-02
70	GO:0016413: O-acetyltransferase activity	3.60E-02
71	GO:0016597: amino acid binding	3.60E-02
72	GO:0051213: dioxygenase activity	3.75E-02
73	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.21E-02
74	GO:0030247: polysaccharide binding	4.21E-02
75	GO:0005096: GTPase activator activity	4.69E-02
76	GO:0004222: metalloendopeptidase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0032541: cortical endoplasmic reticulum	2.89E-04
4	GO:0071821: FANCM-MHF complex	2.89E-04
5	GO:0043240: Fanconi anaemia nuclear complex	2.89E-04
6	GO:0030139: endocytic vesicle	1.03E-03
7	GO:0032585: multivesicular body membrane	1.47E-03
8	GO:0009654: photosystem II oxygen evolving complex	1.49E-03
9	GO:0009898: cytoplasmic side of plasma membrane	1.97E-03
10	GO:0009544: chloroplast ATP synthase complex	1.97E-03
11	GO:0019898: extrinsic component of membrane	3.08E-03
12	GO:0009986: cell surface	4.41E-03
13	GO:0042644: chloroplast nucleoid	6.65E-03
14	GO:0005578: proteinaceous extracellular matrix	1.11E-02
15	GO:0030095: chloroplast photosystem II	1.21E-02
16	GO:0005875: microtubule associated complex	1.41E-02
17	GO:0010008: endosome membrane	1.68E-02
18	GO:0009504: cell plate	2.75E-02
19	GO:0030529: intracellular ribonucleoprotein complex	3.75E-02
20	GO:0005667: transcription factor complex	4.05E-02
21	GO:0046658: anchored component of plasma membrane	4.48E-02
22	GO:0009707: chloroplast outer membrane	4.53E-02