Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G61410

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:0010081: regulation of inflorescence meristem growth0.00E+00
5GO:0090071: negative regulation of ribosome biogenesis0.00E+00
6GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
7GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
8GO:0001778: plasma membrane repair0.00E+00
9GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
10GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
11GO:0017038: protein import0.00E+00
12GO:0007638: mechanosensory behavior0.00E+00
13GO:0046620: regulation of organ growth8.31E-08
14GO:0040008: regulation of growth3.06E-05
15GO:0009733: response to auxin3.78E-05
16GO:0015995: chlorophyll biosynthetic process7.81E-05
17GO:0016123: xanthophyll biosynthetic process9.24E-05
18GO:0009926: auxin polar transport2.25E-04
19GO:0048437: floral organ development2.39E-04
20GO:0043266: regulation of potassium ion transport2.99E-04
21GO:0010063: positive regulation of trichoblast fate specification2.99E-04
22GO:0010480: microsporocyte differentiation2.99E-04
23GO:0010080: regulation of floral meristem growth2.99E-04
24GO:0042759: long-chain fatty acid biosynthetic process2.99E-04
25GO:2000021: regulation of ion homeostasis2.99E-04
26GO:1902458: positive regulation of stomatal opening2.99E-04
27GO:0048363: mucilage pectin metabolic process2.99E-04
28GO:0070509: calcium ion import2.99E-04
29GO:0051382: kinetochore assembly2.99E-04
30GO:0009638: phototropism5.28E-04
31GO:1900865: chloroplast RNA modification5.28E-04
32GO:0071668: plant-type cell wall assembly6.55E-04
33GO:0009786: regulation of asymmetric cell division6.55E-04
34GO:0046740: transport of virus in host, cell to cell6.55E-04
35GO:0001682: tRNA 5'-leader removal6.55E-04
36GO:1903426: regulation of reactive oxygen species biosynthetic process6.55E-04
37GO:0031297: replication fork processing6.55E-04
38GO:2000123: positive regulation of stomatal complex development6.55E-04
39GO:0010275: NAD(P)H dehydrogenase complex assembly6.55E-04
40GO:0060359: response to ammonium ion6.55E-04
41GO:0048255: mRNA stabilization6.55E-04
42GO:1900871: chloroplast mRNA modification6.55E-04
43GO:0009734: auxin-activated signaling pathway8.11E-04
44GO:0007275: multicellular organism development8.20E-04
45GO:0010207: photosystem II assembly1.03E-03
46GO:0080055: low-affinity nitrate transport1.06E-03
47GO:0006696: ergosterol biosynthetic process1.06E-03
48GO:0043157: response to cation stress1.06E-03
49GO:0045910: negative regulation of DNA recombination1.06E-03
50GO:1902448: positive regulation of shade avoidance1.06E-03
51GO:0010022: meristem determinacy1.06E-03
52GO:0031145: anaphase-promoting complex-dependent catabolic process1.06E-03
53GO:0070588: calcium ion transmembrane transport1.15E-03
54GO:0009451: RNA modification1.50E-03
55GO:0016556: mRNA modification1.52E-03
56GO:2001141: regulation of RNA biosynthetic process1.52E-03
57GO:0010071: root meristem specification1.52E-03
58GO:0007231: osmosensory signaling pathway1.52E-03
59GO:0009102: biotin biosynthetic process1.52E-03
60GO:0030071: regulation of mitotic metaphase/anaphase transition1.52E-03
61GO:0032456: endocytic recycling1.52E-03
62GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.52E-03
63GO:0006612: protein targeting to membrane1.52E-03
64GO:0046739: transport of virus in multicellular host1.52E-03
65GO:0007166: cell surface receptor signaling pathway1.77E-03
66GO:0010109: regulation of photosynthesis2.04E-03
67GO:0009765: photosynthesis, light harvesting2.04E-03
68GO:0033500: carbohydrate homeostasis2.04E-03
69GO:2000038: regulation of stomatal complex development2.04E-03
70GO:0008295: spermidine biosynthetic process2.04E-03
71GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.05E-03
72GO:0016117: carotenoid biosynthetic process2.41E-03
73GO:0045038: protein import into chloroplast thylakoid membrane2.61E-03
74GO:0032876: negative regulation of DNA endoreduplication2.61E-03
75GO:0010375: stomatal complex patterning2.61E-03
76GO:0000304: response to singlet oxygen2.61E-03
77GO:0080110: sporopollenin biosynthetic process2.61E-03
78GO:0016120: carotene biosynthetic process2.61E-03
79GO:0010305: leaf vascular tissue pattern formation2.81E-03
80GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.22E-03
81GO:0010405: arabinogalactan protein metabolic process3.22E-03
82GO:0009959: negative gravitropism3.22E-03
83GO:0016554: cytidine to uridine editing3.22E-03
84GO:0032973: amino acid export3.22E-03
85GO:0018258: protein O-linked glycosylation via hydroxyproline3.22E-03
86GO:0016032: viral process3.70E-03
87GO:0080086: stamen filament development3.87E-03
88GO:0042372: phylloquinone biosynthetic process3.87E-03
89GO:0009612: response to mechanical stimulus3.87E-03
90GO:0017148: negative regulation of translation3.87E-03
91GO:0009742: brassinosteroid mediated signaling pathway3.96E-03
92GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.12E-03
93GO:0009828: plant-type cell wall loosening4.20E-03
94GO:0010444: guard mother cell differentiation4.57E-03
95GO:0015693: magnesium ion transport4.57E-03
96GO:0000712: resolution of meiotic recombination intermediates4.57E-03
97GO:0048528: post-embryonic root development4.57E-03
98GO:0043090: amino acid import4.57E-03
99GO:0030497: fatty acid elongation4.57E-03
100GO:0009416: response to light stimulus4.73E-03
101GO:0010027: thylakoid membrane organization5.00E-03
102GO:0006605: protein targeting5.30E-03
103GO:0032875: regulation of DNA endoreduplication5.30E-03
104GO:2000070: regulation of response to water deprivation5.30E-03
105GO:0000105: histidine biosynthetic process5.30E-03
106GO:0048564: photosystem I assembly5.30E-03
107GO:0032544: plastid translation6.08E-03
108GO:0007129: synapsis6.08E-03
109GO:0071482: cellular response to light stimulus6.08E-03
110GO:0015996: chlorophyll catabolic process6.08E-03
111GO:0007186: G-protein coupled receptor signaling pathway6.08E-03
112GO:0010497: plasmodesmata-mediated intercellular transport6.08E-03
113GO:0009657: plastid organization6.08E-03
114GO:0000373: Group II intron splicing6.89E-03
115GO:0000902: cell morphogenesis6.89E-03
116GO:0080144: amino acid homeostasis6.89E-03
117GO:0048507: meristem development6.89E-03
118GO:0046916: cellular transition metal ion homeostasis6.89E-03
119GO:0006779: porphyrin-containing compound biosynthetic process7.74E-03
120GO:0048354: mucilage biosynthetic process involved in seed coat development7.74E-03
121GO:0045087: innate immune response8.28E-03
122GO:0048829: root cap development8.62E-03
123GO:0009641: shade avoidance8.62E-03
124GO:0006298: mismatch repair8.62E-03
125GO:0006949: syncytium formation8.62E-03
126GO:0009299: mRNA transcription8.62E-03
127GO:0006782: protoporphyrinogen IX biosynthetic process8.62E-03
128GO:0006352: DNA-templated transcription, initiation9.55E-03
129GO:0048229: gametophyte development9.55E-03
130GO:0006816: calcium ion transport9.55E-03
131GO:0009773: photosynthetic electron transport in photosystem I9.55E-03
132GO:0009073: aromatic amino acid family biosynthetic process9.55E-03
133GO:0006415: translational termination9.55E-03
134GO:0009793: embryo development ending in seed dormancy9.78E-03
135GO:0005983: starch catabolic process1.05E-02
136GO:0045037: protein import into chloroplast stroma1.05E-02
137GO:0010582: floral meristem determinacy1.05E-02
138GO:0050826: response to freezing1.15E-02
139GO:0009718: anthocyanin-containing compound biosynthetic process1.15E-02
140GO:0010075: regulation of meristem growth1.15E-02
141GO:0009725: response to hormone1.15E-02
142GO:0009785: blue light signaling pathway1.15E-02
143GO:0010628: positive regulation of gene expression1.15E-02
144GO:0009826: unidimensional cell growth1.23E-02
145GO:0009934: regulation of meristem structural organization1.25E-02
146GO:0009658: chloroplast organization1.29E-02
147GO:0009664: plant-type cell wall organization1.35E-02
148GO:0010030: positive regulation of seed germination1.36E-02
149GO:0000162: tryptophan biosynthetic process1.47E-02
150GO:0010025: wax biosynthetic process1.47E-02
151GO:0007010: cytoskeleton organization1.58E-02
152GO:0048316: seed development1.77E-02
153GO:0048511: rhythmic process1.81E-02
154GO:0031408: oxylipin biosynthetic process1.81E-02
155GO:0030245: cellulose catabolic process1.93E-02
156GO:0009294: DNA mediated transformation2.05E-02
157GO:0010082: regulation of root meristem growth2.05E-02
158GO:0010584: pollen exine formation2.18E-02
159GO:0006284: base-excision repair2.18E-02
160GO:0042127: regulation of cell proliferation2.18E-02
161GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.31E-02
162GO:0000271: polysaccharide biosynthetic process2.44E-02
163GO:0008033: tRNA processing2.44E-02
164GO:0000413: protein peptidyl-prolyl isomerization2.44E-02
165GO:0010087: phloem or xylem histogenesis2.44E-02
166GO:0048653: anther development2.44E-02
167GO:0042631: cellular response to water deprivation2.44E-02
168GO:0006662: glycerol ether metabolic process2.57E-02
169GO:0010182: sugar mediated signaling pathway2.57E-02
170GO:0006468: protein phosphorylation2.57E-02
171GO:0045489: pectin biosynthetic process2.57E-02
172GO:0007018: microtubule-based movement2.71E-02
173GO:0042752: regulation of circadian rhythm2.71E-02
174GO:0009646: response to absence of light2.71E-02
175GO:0006397: mRNA processing2.91E-02
176GO:0032502: developmental process3.13E-02
177GO:0009630: gravitropism3.13E-02
178GO:0010090: trichome morphogenesis3.28E-02
179GO:1901657: glycosyl compound metabolic process3.28E-02
180GO:0006464: cellular protein modification process3.42E-02
181GO:0007267: cell-cell signaling3.58E-02
182GO:0051607: defense response to virus3.73E-02
183GO:0009615: response to virus3.88E-02
184GO:0009627: systemic acquired resistance4.20E-02
185GO:0048481: plant ovule development4.69E-02
186GO:0010311: lateral root formation4.85E-02
187GO:0009813: flavonoid biosynthetic process4.85E-02
RankGO TermAdjusted P value
1GO:0046905: phytoene synthase activity0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0015267: channel activity0.00E+00
4GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
5GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
6GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
7GO:0004076: biotin synthase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0001872: (1->3)-beta-D-glucan binding3.26E-05
10GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.99E-04
11GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity2.99E-04
12GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.99E-04
13GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.99E-04
14GO:0050308: sugar-phosphatase activity2.99E-04
15GO:0019203: carbohydrate phosphatase activity2.99E-04
16GO:0051996: squalene synthase activity2.99E-04
17GO:0004519: endonuclease activity4.82E-04
18GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.55E-04
19GO:0017118: lipoyltransferase activity6.55E-04
20GO:0043425: bHLH transcription factor binding6.55E-04
21GO:0004766: spermidine synthase activity6.55E-04
22GO:0008805: carbon-monoxide oxygenase activity6.55E-04
23GO:1901981: phosphatidylinositol phosphate binding6.55E-04
24GO:0031072: heat shock protein binding9.19E-04
25GO:0005262: calcium channel activity9.19E-04
26GO:0003723: RNA binding9.25E-04
27GO:0008266: poly(U) RNA binding1.03E-03
28GO:0016805: dipeptidase activity1.06E-03
29GO:0080054: low-affinity nitrate transmembrane transporter activity1.06E-03
30GO:0015462: ATPase-coupled protein transmembrane transporter activity1.06E-03
31GO:0004180: carboxypeptidase activity1.06E-03
32GO:0005504: fatty acid binding1.06E-03
33GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.30E-03
34GO:0016851: magnesium chelatase activity1.52E-03
35GO:0043023: ribosomal large subunit binding1.52E-03
36GO:0016149: translation release factor activity, codon specific1.52E-03
37GO:0001053: plastid sigma factor activity2.04E-03
38GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.04E-03
39GO:0016987: sigma factor activity2.04E-03
40GO:0045430: chalcone isomerase activity2.04E-03
41GO:0019199: transmembrane receptor protein kinase activity2.04E-03
42GO:0008725: DNA-3-methyladenine glycosylase activity2.61E-03
43GO:2001070: starch binding3.22E-03
44GO:0030983: mismatched DNA binding3.22E-03
45GO:1990714: hydroxyproline O-galactosyltransferase activity3.22E-03
46GO:0004526: ribonuclease P activity3.22E-03
47GO:0016208: AMP binding3.22E-03
48GO:0004462: lactoylglutathione lyase activity3.22E-03
49GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.87E-03
50GO:0051753: mannan synthase activity3.87E-03
51GO:0030247: polysaccharide binding5.89E-03
52GO:0046914: transition metal ion binding6.08E-03
53GO:0008138: protein tyrosine/serine/threonine phosphatase activity6.89E-03
54GO:0003747: translation release factor activity6.89E-03
55GO:0008017: microtubule binding7.82E-03
56GO:0015095: magnesium ion transmembrane transporter activity1.15E-02
57GO:0009982: pseudouridine synthase activity1.15E-02
58GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.25E-02
59GO:0008146: sulfotransferase activity1.36E-02
60GO:0005528: FK506 binding1.58E-02
61GO:0003777: microtubule motor activity1.60E-02
62GO:0015171: amino acid transmembrane transporter activity1.60E-02
63GO:0043424: protein histidine kinase binding1.69E-02
64GO:0003964: RNA-directed DNA polymerase activity1.81E-02
65GO:0004176: ATP-dependent peptidase activity1.81E-02
66GO:0033612: receptor serine/threonine kinase binding1.81E-02
67GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.93E-02
68GO:0030570: pectate lyase activity2.05E-02
69GO:0008810: cellulase activity2.05E-02
70GO:0051082: unfolded protein binding2.06E-02
71GO:0015035: protein disulfide oxidoreductase activity2.12E-02
72GO:0003756: protein disulfide isomerase activity2.18E-02
73GO:0047134: protein-disulfide reductase activity2.31E-02
74GO:0016758: transferase activity, transferring hexosyl groups2.52E-02
75GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.54E-02
76GO:0016491: oxidoreductase activity2.57E-02
77GO:0046983: protein dimerization activity2.63E-02
78GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.65E-02
79GO:0004791: thioredoxin-disulfide reductase activity2.71E-02
80GO:0016853: isomerase activity2.71E-02
81GO:0050662: coenzyme binding2.71E-02
82GO:0019901: protein kinase binding2.85E-02
83GO:0004518: nuclease activity3.13E-02
84GO:0003729: mRNA binding3.15E-02
85GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.28E-02
86GO:0003684: damaged DNA binding3.42E-02
87GO:0005200: structural constituent of cytoskeleton3.58E-02
88GO:0008483: transaminase activity3.58E-02
89GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.58E-02
90GO:0008237: metallopeptidase activity3.58E-02
91GO:0016597: amino acid binding3.73E-02
92GO:0005524: ATP binding3.79E-02
93GO:0102483: scopolin beta-glucosidase activity4.36E-02
94GO:0004674: protein serine/threonine kinase activity4.62E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.64E-17
2GO:0009941: chloroplast envelope7.50E-08
3GO:0009570: chloroplast stroma5.96E-05
4GO:0005886: plasma membrane1.12E-04
5GO:0031969: chloroplast membrane1.73E-04
6GO:0032541: cortical endoplasmic reticulum2.99E-04
7GO:0071821: FANCM-MHF complex2.99E-04
8GO:0043240: Fanconi anaemia nuclear complex2.99E-04
9GO:0009535: chloroplast thylakoid membrane3.85E-04
10GO:0009534: chloroplast thylakoid5.09E-04
11GO:0009508: plastid chromosome9.19E-04
12GO:0009528: plastid inner membrane1.06E-03
13GO:0010007: magnesium chelatase complex1.06E-03
14GO:0030139: endocytic vesicle1.06E-03
15GO:0032585: multivesicular body membrane1.52E-03
16GO:0030663: COPI-coated vesicle membrane2.04E-03
17GO:0009527: plastid outer membrane2.04E-03
18GO:0009898: cytoplasmic side of plasma membrane2.04E-03
19GO:0005874: microtubule3.71E-03
20GO:0010319: stromule4.45E-03
21GO:0009295: nucleoid4.45E-03
22GO:0009986: cell surface4.57E-03
23GO:0009533: chloroplast stromal thylakoid4.57E-03
24GO:0009543: chloroplast thylakoid lumen4.89E-03
25GO:0030529: intracellular ribonucleoprotein complex5.00E-03
26GO:0009501: amyloplast5.30E-03
27GO:0009707: chloroplast outer membrane6.53E-03
28GO:0005680: anaphase-promoting complex6.89E-03
29GO:0016604: nuclear body7.74E-03
30GO:0030125: clathrin vesicle coat8.62E-03
31GO:0043234: protein complex1.47E-02
32GO:0009654: photosystem II oxygen evolving complex1.69E-02
33GO:0009532: plastid stroma1.81E-02
34GO:0015629: actin cytoskeleton2.05E-02
35GO:0009536: plastid2.28E-02
36GO:0005871: kinesin complex2.31E-02
37GO:0019898: extrinsic component of membrane2.85E-02
38GO:0043231: intracellular membrane-bounded organelle3.12E-02
39GO:0005778: peroxisomal membrane3.58E-02
40GO:0046658: anchored component of plasma membrane4.70E-02
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Gene type



Gene DE type