co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006434: seryl-tRNA aminoacylation	5.48E-05
2	GO:0030198: extracellular matrix organization	5.48E-05
3	GO:0046520: sphingoid biosynthetic process	5.48E-05
4	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	5.48E-05
5	GO:0043039: tRNA aminoacylation	1.34E-04
6	GO:0006741: NADP biosynthetic process	1.34E-04
7	GO:0019388: galactose catabolic process	1.34E-04
8	GO:0071497: cellular response to freezing	1.34E-04
9	GO:0090342: regulation of cell aging	1.34E-04
10	GO:0019674: NAD metabolic process	2.28E-04
11	GO:0019363: pyridine nucleotide biosynthetic process	3.33E-04
12	GO:0009590: detection of gravity	3.33E-04
13	GO:0006808: regulation of nitrogen utilization	4.45E-04
14	GO:1901141: regulation of lignin biosynthetic process	4.45E-04
15	GO:1902347: response to strigolactone	4.45E-04
16	GO:0042938: dipeptide transport	4.45E-04
17	GO:0060918: auxin transport	6.92E-04
18	GO:0010310: regulation of hydrogen peroxide metabolic process	8.25E-04
19	GO:0010098: suspensor development	9.62E-04
20	GO:0006631: fatty acid metabolic process	9.88E-04
21	GO:0009640: photomorphogenesis	1.07E-03
22	GO:0005978: glycogen biosynthetic process	1.11E-03
23	GO:0009704: de-etiolation	1.11E-03
24	GO:0010206: photosystem II repair	1.41E-03
25	GO:0006857: oligopeptide transport	1.52E-03
26	GO:1900865: chloroplast RNA modification	1.58E-03
27	GO:0045036: protein targeting to chloroplast	1.75E-03
28	GO:0010629: negative regulation of gene expression	1.75E-03
29	GO:0012501: programmed cell death	2.11E-03
30	GO:0005983: starch catabolic process	2.11E-03
31	GO:0015706: nitrate transport	2.11E-03
32	GO:2000012: regulation of auxin polar transport	2.30E-03
33	GO:0010102: lateral root morphogenesis	2.30E-03
34	GO:0006006: glucose metabolic process	2.30E-03
35	GO:0010020: chloroplast fission	2.49E-03
36	GO:0090351: seedling development	2.70E-03
37	GO:0048278: vesicle docking	3.54E-03
38	GO:0007005: mitochondrion organization	3.77E-03
39	GO:0010051: xylem and phloem pattern formation	4.71E-03
40	GO:0009741: response to brassinosteroid	4.96E-03
41	GO:0061025: membrane fusion	5.22E-03
42	GO:0019252: starch biosynthetic process	5.48E-03
43	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	5.74E-03
44	GO:0030163: protein catabolic process	6.27E-03
45	GO:0010027: thylakoid membrane organization	7.40E-03
46	GO:0006508: proteolysis	7.55E-03
47	GO:0006906: vesicle fusion	7.99E-03
48	GO:0048481: plant ovule development	8.91E-03
49	GO:0000160: phosphorelay signal transduction system	9.22E-03
50	GO:0009813: flavonoid biosynthetic process	9.22E-03
51	GO:0032259: methylation	9.24E-03
52	GO:0009631: cold acclimation	9.86E-03
53	GO:0009409: response to cold	1.05E-02
54	GO:0006887: exocytosis	1.19E-02
55	GO:0009734: auxin-activated signaling pathway	1.36E-02
56	GO:0009736: cytokinin-activated signaling pathway	1.55E-02
57	GO:0009740: gibberellic acid mediated signaling pathway	1.91E-02
58	GO:0009742: brassinosteroid mediated signaling pathway	2.08E-02
59	GO:0009058: biosynthetic process	2.43E-02
60	GO:0006633: fatty acid biosynthetic process	2.75E-02
61	GO:0006413: translational initiation	2.80E-02
62	GO:0040008: regulation of growth	2.85E-02
63	GO:0009451: RNA modification	2.99E-02
64	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.19E-02
65	GO:0010468: regulation of gene expression	3.34E-02
66	GO:0008380: RNA splicing	3.34E-02
67	GO:0009733: response to auxin	3.90E-02
68	GO:0009826: unidimensional cell growth	3.91E-02
69	GO:0009658: chloroplast organization	4.01E-02
70	GO:0007049: cell cycle	4.34E-02
71	GO:0009723: response to ethylene	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0005201: extracellular matrix structural constituent	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0042736: NADH kinase activity	5.48E-05
4	GO:0000170: sphingosine hydroxylase activity	5.48E-05
5	GO:0004828: serine-tRNA ligase activity	5.48E-05
6	GO:0009374: biotin binding	5.48E-05
7	GO:0042284: sphingolipid delta-4 desaturase activity	1.34E-04
8	GO:0004614: phosphoglucomutase activity	1.34E-04
9	GO:0017150: tRNA dihydrouridine synthase activity	2.28E-04
10	GO:0005504: fatty acid binding	2.28E-04
11	GO:0042936: dipeptide transporter activity	4.45E-04
12	GO:0045430: chalcone isomerase activity	4.45E-04
13	GO:0003989: acetyl-CoA carboxylase activity	5.66E-04
14	GO:0003951: NAD+ kinase activity	1.26E-03
15	GO:0004190: aspartic-type endopeptidase activity	2.70E-03
16	GO:0008408: 3'-5' exonuclease activity	3.54E-03
17	GO:0004707: MAP kinase activity	3.54E-03
18	GO:0004527: exonuclease activity	4.96E-03
19	GO:0008168: methyltransferase activity	5.08E-03
20	GO:0016853: isomerase activity	5.22E-03
21	GO:0000156: phosphorelay response regulator activity	6.27E-03
22	GO:0008233: peptidase activity	6.43E-03
23	GO:0005215: transporter activity	8.09E-03
24	GO:0008236: serine-type peptidase activity	8.60E-03
25	GO:0009055: electron carrier activity	1.04E-02
26	GO:0004519: endonuclease activity	1.05E-02
27	GO:0000149: SNARE binding	1.12E-02
28	GO:0042393: histone binding	1.15E-02
29	GO:0005484: SNAP receptor activity	1.26E-02
30	GO:0043621: protein self-association	1.33E-02
31	GO:0035091: phosphatidylinositol binding	1.33E-02
32	GO:0005198: structural molecule activity	1.37E-02
33	GO:0016298: lipase activity	1.59E-02
34	GO:0016874: ligase activity	1.91E-02
35	GO:0004386: helicase activity	2.12E-02
36	GO:0004252: serine-type endopeptidase activity	2.52E-02
37	GO:0003743: translation initiation factor activity	3.29E-02
38	GO:0003824: catalytic activity	3.82E-02
39	GO:0000287: magnesium ion binding	3.96E-02
40	GO:0003676: nucleic acid binding	4.22E-02
41	GO:0050660: flavin adenine dinucleotide binding	4.45E-02
42	GO:0061630: ubiquitin protein ligase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	8.77E-05
2	GO:0043036: starch grain	1.34E-04
3	GO:0009317: acetyl-CoA carboxylase complex	2.28E-04
4	GO:0090404: pollen tube tip	1.93E-03
5	GO:0009570: chloroplast stroma	1.93E-03
6	GO:0009507: chloroplast	3.65E-03
7	GO:0005622: intracellular	6.03E-03
8	GO:0010319: stromule	6.83E-03
9	GO:0031201: SNARE complex	1.19E-02
10	GO:0031977: thylakoid lumen	1.19E-02
11	GO:0009941: chloroplast envelope	1.44E-02
12	GO:0012505: endomembrane system	1.95E-02
13	GO:0009543: chloroplast thylakoid lumen	2.34E-02
14	GO:0005623: cell	2.38E-02
15	GO:0031225: anchored component of membrane	2.68E-02
16	GO:0046658: anchored component of plasma membrane	3.59E-02