co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046486: glycerolipid metabolic process	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:1905615: positive regulation of developmental vegetative growth	0.00E+00
4	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
5	GO:0045176: apical protein localization	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:0051013: microtubule severing	2.80E-04
8	GO:0034757: negative regulation of iron ion transport	2.80E-04
9	GO:0045786: negative regulation of cell cycle	2.80E-04
10	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.80E-04
11	GO:0032958: inositol phosphate biosynthetic process	2.80E-04
12	GO:0010070: zygote asymmetric cell division	2.80E-04
13	GO:0007186: G-protein coupled receptor signaling pathway	3.35E-04
14	GO:0048829: root cap development	5.60E-04
15	GO:0001736: establishment of planar polarity	6.14E-04
16	GO:0010069: zygote asymmetric cytokinesis in embryo sac	6.14E-04
17	GO:0080175: phragmoplast microtubule organization	6.14E-04
18	GO:0006650: glycerophospholipid metabolic process	6.14E-04
19	GO:0061062: regulation of nematode larval development	6.14E-04
20	GO:0010271: regulation of chlorophyll catabolic process	6.14E-04
21	GO:0009734: auxin-activated signaling pathway	6.64E-04
22	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.78E-04
23	GO:0010540: basipetal auxin transport	9.39E-04
24	GO:0042780: tRNA 3'-end processing	9.96E-04
25	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	9.96E-04
26	GO:0090506: axillary shoot meristem initiation	9.96E-04
27	GO:0046168: glycerol-3-phosphate catabolic process	9.96E-04
28	GO:0080117: secondary growth	9.96E-04
29	GO:0006518: peptide metabolic process	9.96E-04
30	GO:0009416: response to light stimulus	1.05E-03
31	GO:0009825: multidimensional cell growth	1.05E-03
32	GO:0006863: purine nucleobase transport	1.16E-03
33	GO:0009451: RNA modification	1.29E-03
34	GO:0045017: glycerolipid biosynthetic process	1.42E-03
35	GO:0009926: auxin polar transport	1.42E-03
36	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.42E-03
37	GO:0006020: inositol metabolic process	1.42E-03
38	GO:0006072: glycerol-3-phosphate metabolic process	1.42E-03
39	GO:0003333: amino acid transmembrane transport	1.56E-03
40	GO:0009956: radial pattern formation	1.91E-03
41	GO:0006021: inositol biosynthetic process	1.91E-03
42	GO:0009658: chloroplast organization	2.42E-03
43	GO:0051225: spindle assembly	2.43E-03
44	GO:0009958: positive gravitropism	2.54E-03
45	GO:0048827: phyllome development	3.00E-03
46	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	3.00E-03
47	GO:1901371: regulation of leaf morphogenesis	3.00E-03
48	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.00E-03
49	GO:0048831: regulation of shoot system development	3.00E-03
50	GO:0003006: developmental process involved in reproduction	3.00E-03
51	GO:0009624: response to nematode	3.24E-03
52	GO:0010583: response to cyclopentenone	3.35E-03
53	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.62E-03
54	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.62E-03
55	GO:1901001: negative regulation of response to salt stress	3.62E-03
56	GO:0009942: longitudinal axis specification	3.62E-03
57	GO:0048509: regulation of meristem development	3.62E-03
58	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.26E-03
59	GO:0006401: RNA catabolic process	4.26E-03
60	GO:0009610: response to symbiotic fungus	4.26E-03
61	GO:0007050: cell cycle arrest	4.26E-03
62	GO:0000105: histidine biosynthetic process	4.95E-03
63	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.95E-03
64	GO:0007389: pattern specification process	5.67E-03
65	GO:0009657: plastid organization	5.67E-03
66	GO:0010052: guard cell differentiation	5.67E-03
67	GO:0000160: phosphorelay signal transduction system	6.21E-03
68	GO:0009832: plant-type cell wall biogenesis	6.21E-03
69	GO:0000373: Group II intron splicing	6.43E-03
70	GO:0048589: developmental growth	6.43E-03
71	GO:0009056: catabolic process	6.43E-03
72	GO:0048507: meristem development	6.43E-03
73	GO:0006865: amino acid transport	7.16E-03
74	GO:0008202: steroid metabolic process	7.22E-03
75	GO:0010192: mucilage biosynthetic process	8.04E-03
76	GO:0009750: response to fructose	8.90E-03
77	GO:0016485: protein processing	8.90E-03
78	GO:0048765: root hair cell differentiation	8.90E-03
79	GO:0008285: negative regulation of cell proliferation	8.90E-03
80	GO:0009089: lysine biosynthetic process via diaminopimelate	8.90E-03
81	GO:0006790: sulfur compound metabolic process	9.79E-03
82	GO:0005983: starch catabolic process	9.79E-03
83	GO:0045037: protein import into chloroplast stroma	9.79E-03
84	GO:0010582: floral meristem determinacy	9.79E-03
85	GO:0010152: pollen maturation	9.79E-03
86	GO:0010229: inflorescence development	1.07E-02
87	GO:0009718: anthocyanin-containing compound biosynthetic process	1.07E-02
88	GO:0010223: secondary shoot formation	1.17E-02
89	GO:0048467: gynoecium development	1.17E-02
90	GO:0010020: chloroplast fission	1.17E-02
91	GO:0009933: meristem structural organization	1.17E-02
92	GO:0010207: photosystem II assembly	1.17E-02
93	GO:0046854: phosphatidylinositol phosphorylation	1.26E-02
94	GO:0080188: RNA-directed DNA methylation	1.26E-02
95	GO:0009736: cytokinin-activated signaling pathway	1.31E-02
96	GO:0009833: plant-type primary cell wall biogenesis	1.37E-02
97	GO:0016567: protein ubiquitination	1.41E-02
98	GO:0080147: root hair cell development	1.47E-02
99	GO:0006874: cellular calcium ion homeostasis	1.58E-02
100	GO:0043622: cortical microtubule organization	1.58E-02
101	GO:0009733: response to auxin	1.65E-02
102	GO:0006306: DNA methylation	1.68E-02
103	GO:0006351: transcription, DNA-templated	1.76E-02
104	GO:0016226: iron-sulfur cluster assembly	1.80E-02
105	GO:0001944: vasculature development	1.91E-02
106	GO:0071215: cellular response to abscisic acid stimulus	1.91E-02
107	GO:0009686: gibberellin biosynthetic process	1.91E-02
108	GO:0048443: stamen development	2.03E-02
109	GO:0006284: base-excision repair	2.03E-02
110	GO:0010091: trichome branching	2.03E-02
111	GO:0070417: cellular response to cold	2.15E-02
112	GO:0010087: phloem or xylem histogenesis	2.27E-02
113	GO:0048653: anther development	2.27E-02
114	GO:0000226: microtubule cytoskeleton organization	2.27E-02
115	GO:0000271: polysaccharide biosynthetic process	2.27E-02
116	GO:0048868: pollen tube development	2.39E-02
117	GO:0045489: pectin biosynthetic process	2.39E-02
118	GO:0010305: leaf vascular tissue pattern formation	2.39E-02
119	GO:0048364: root development	2.57E-02
120	GO:0008654: phospholipid biosynthetic process	2.65E-02
121	GO:0048825: cotyledon development	2.65E-02
122	GO:0009749: response to glucose	2.65E-02
123	GO:0006355: regulation of transcription, DNA-templated	2.69E-02
124	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.78E-02
125	GO:0002229: defense response to oomycetes	2.78E-02
126	GO:0031047: gene silencing by RNA	2.91E-02
127	GO:0010252: auxin homeostasis	3.19E-02
128	GO:0009639: response to red or far red light	3.19E-02
129	GO:0009739: response to gibberellin	3.61E-02
130	GO:0009911: positive regulation of flower development	3.62E-02
131	GO:0010029: regulation of seed germination	3.76E-02
132	GO:0009627: systemic acquired resistance	3.91E-02
133	GO:0010411: xyloglucan metabolic process	4.06E-02
134	GO:0006468: protein phosphorylation	4.36E-02
135	GO:0009817: defense response to fungus, incompatible interaction	4.37E-02
136	GO:0030244: cellulose biosynthetic process	4.37E-02
137	GO:0010311: lateral root formation	4.52E-02
138	GO:0006811: ion transport	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0008859: exoribonuclease II activity	0.00E+00
3	GO:0004401: histidinol-phosphatase activity	0.00E+00
4	GO:0010011: auxin binding	5.21E-05
5	GO:0010328: auxin influx transmembrane transporter activity	5.21E-05
6	GO:0004871: signal transducer activity	2.31E-04
7	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.80E-04
8	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.80E-04
9	GO:0000829: inositol heptakisphosphate kinase activity	2.80E-04
10	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.80E-04
11	GO:0008836: diaminopimelate decarboxylase activity	2.80E-04
12	GO:0000828: inositol hexakisphosphate kinase activity	2.80E-04
13	GO:0008568: microtubule-severing ATPase activity	2.80E-04
14	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.80E-04
15	GO:0010296: prenylcysteine methylesterase activity	6.14E-04
16	GO:0004047: aminomethyltransferase activity	6.14E-04
17	GO:0052832: inositol monophosphate 3-phosphatase activity	6.14E-04
18	GO:0008805: carbon-monoxide oxygenase activity	6.14E-04
19	GO:0008934: inositol monophosphate 1-phosphatase activity	6.14E-04
20	GO:0052833: inositol monophosphate 4-phosphatase activity	6.14E-04
21	GO:0009884: cytokinin receptor activity	6.14E-04
22	GO:0019156: isoamylase activity	6.14E-04
23	GO:0005034: osmosensor activity	9.96E-04
24	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.96E-04
25	GO:0016707: gibberellin 3-beta-dioxygenase activity	9.96E-04
26	GO:0042781: 3'-tRNA processing endoribonuclease activity	9.96E-04
27	GO:0005345: purine nucleobase transmembrane transporter activity	1.42E-03
28	GO:0004540: ribonuclease activity	1.56E-03
29	GO:0004930: G-protein coupled receptor activity	1.91E-03
30	GO:0008725: DNA-3-methyladenine glycosylase activity	2.43E-03
31	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	3.00E-03
32	GO:0030332: cyclin binding	3.00E-03
33	GO:0004556: alpha-amylase activity	3.00E-03
34	GO:0004462: lactoylglutathione lyase activity	3.00E-03
35	GO:0019900: kinase binding	3.62E-03
36	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.62E-03
37	GO:0008142: oxysterol binding	5.67E-03
38	GO:0004222: metalloendopeptidase activity	6.51E-03
39	GO:0009672: auxin:proton symporter activity	7.22E-03
40	GO:0004673: protein histidine kinase activity	8.04E-03
41	GO:0043621: protein self-association	1.05E-02
42	GO:0000155: phosphorelay sensor kinase activity	1.07E-02
43	GO:0009982: pseudouridine synthase activity	1.07E-02
44	GO:0000175: 3'-5'-exoribonuclease activity	1.07E-02
45	GO:0010329: auxin efflux transmembrane transporter activity	1.07E-02
46	GO:0015293: symporter activity	1.09E-02
47	GO:0004535: poly(A)-specific ribonuclease activity	1.17E-02
48	GO:0005217: intracellular ligand-gated ion channel activity	1.26E-02
49	GO:0004970: ionotropic glutamate receptor activity	1.26E-02
50	GO:0015171: amino acid transmembrane transporter activity	1.45E-02
51	GO:0008134: transcription factor binding	1.47E-02
52	GO:0043424: protein histidine kinase binding	1.58E-02
53	GO:0004674: protein serine/threonine kinase activity	1.62E-02
54	GO:0033612: receptor serine/threonine kinase binding	1.68E-02
55	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.80E-02
56	GO:0016760: cellulose synthase (UDP-forming) activity	1.91E-02
57	GO:0030570: pectate lyase activity	1.91E-02
58	GO:0046983: protein dimerization activity	2.22E-02
59	GO:0008080: N-acetyltransferase activity	2.39E-02
60	GO:0004672: protein kinase activity	2.61E-02
61	GO:0019901: protein kinase binding	2.65E-02
62	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.78E-02
63	GO:0003677: DNA binding	2.80E-02
64	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.84E-02
65	GO:0000156: phosphorelay response regulator activity	3.05E-02
66	GO:0016759: cellulose synthase activity	3.19E-02
67	GO:0016301: kinase activity	3.24E-02
68	GO:0008237: metallopeptidase activity	3.33E-02
69	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.06E-02
70	GO:0042802: identical protein binding	4.09E-02
71	GO:0008236: serine-type peptidase activity	4.21E-02
72	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.68E-02
73	GO:0005215: transporter activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0009569: chloroplast starch grain	6.14E-04
4	GO:0070652: HAUS complex	9.96E-04
5	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.42E-03
6	GO:0000178: exosome (RNase complex)	2.43E-03
7	GO:0009986: cell surface	4.26E-03
8	GO:0009707: chloroplast outer membrane	5.91E-03
9	GO:0016602: CCAAT-binding factor complex	1.07E-02
10	GO:0000419: DNA-directed RNA polymerase V complex	1.37E-02
11	GO:0005770: late endosome	2.39E-02
12	GO:0005886: plasma membrane	2.64E-02
13	GO:0016592: mediator complex	2.91E-02
14	GO:0009507: chloroplast	3.05E-02
15	GO:0071944: cell periphery	3.05E-02
16	GO:0009570: chloroplast stroma	3.06E-02
17	GO:0010319: stromule	3.33E-02
18	GO:0000932: P-body	3.62E-02
19	GO:0016021: integral component of membrane	3.83E-02