co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
3	GO:0046486: glycerolipid metabolic process	0.00E+00
4	GO:0006907: pinocytosis	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
7	GO:0034757: negative regulation of iron ion transport	2.29E-04
8	GO:0006438: valyl-tRNA aminoacylation	2.29E-04
9	GO:1900865: chloroplast RNA modification	3.62E-04
10	GO:0061062: regulation of nematode larval development	5.10E-04
11	GO:0010271: regulation of chlorophyll catabolic process	5.10E-04
12	GO:0043039: tRNA aminoacylation	5.10E-04
13	GO:0006423: cysteinyl-tRNA aminoacylation	5.10E-04
14	GO:0006650: glycerophospholipid metabolic process	5.10E-04
15	GO:0009887: animal organ morphogenesis	7.15E-04
16	GO:0080117: secondary growth	8.29E-04
17	GO:0006518: peptide metabolic process	8.29E-04
18	GO:0031145: anaphase-promoting complex-dependent catabolic process	8.29E-04
19	GO:0046168: glycerol-3-phosphate catabolic process	8.29E-04
20	GO:0006418: tRNA aminoacylation for protein translation	1.08E-03
21	GO:0006424: glutamyl-tRNA aminoacylation	1.18E-03
22	GO:0045017: glycerolipid biosynthetic process	1.18E-03
23	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.18E-03
24	GO:0007276: gamete generation	1.18E-03
25	GO:0006072: glycerol-3-phosphate metabolic process	1.18E-03
26	GO:0071215: cellular response to abscisic acid stimulus	1.40E-03
27	GO:0042127: regulation of cell proliferation	1.52E-03
28	GO:0006021: inositol biosynthetic process	1.57E-03
29	GO:0009956: radial pattern formation	1.57E-03
30	GO:0048629: trichome patterning	1.57E-03
31	GO:0009416: response to light stimulus	2.39E-03
32	GO:0048831: regulation of shoot system development	2.48E-03
33	GO:0003006: developmental process involved in reproduction	2.48E-03
34	GO:0016554: cytidine to uridine editing	2.48E-03
35	GO:0006694: steroid biosynthetic process	2.97E-03
36	GO:0048509: regulation of meristem development	2.97E-03
37	GO:0000082: G1/S transition of mitotic cell cycle	3.50E-03
38	GO:0010444: guard mother cell differentiation	3.50E-03
39	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.50E-03
40	GO:0009610: response to symbiotic fungus	3.50E-03
41	GO:1900056: negative regulation of leaf senescence	3.50E-03
42	GO:0010492: maintenance of shoot apical meristem identity	4.06E-03
43	GO:0000105: histidine biosynthetic process	4.06E-03
44	GO:0009231: riboflavin biosynthetic process	4.06E-03
45	GO:0032544: plastid translation	4.65E-03
46	GO:0007186: G-protein coupled receptor signaling pathway	4.65E-03
47	GO:0006811: ion transport	4.89E-03
48	GO:0048589: developmental growth	5.27E-03
49	GO:0009056: catabolic process	5.27E-03
50	GO:0048507: meristem development	5.27E-03
51	GO:0009641: shade avoidance	6.58E-03
52	GO:0006949: syncytium formation	6.58E-03
53	GO:0010629: negative regulation of gene expression	6.58E-03
54	GO:0006782: protoporphyrinogen IX biosynthetic process	6.58E-03
55	GO:0009734: auxin-activated signaling pathway	6.60E-03
56	GO:0009744: response to sucrose	7.25E-03
57	GO:0009750: response to fructose	7.28E-03
58	GO:0008285: negative regulation of cell proliferation	7.28E-03
59	GO:0010152: pollen maturation	8.00E-03
60	GO:0006790: sulfur compound metabolic process	8.00E-03
61	GO:0005983: starch catabolic process	8.00E-03
62	GO:0045037: protein import into chloroplast stroma	8.00E-03
63	GO:0010582: floral meristem determinacy	8.00E-03
64	GO:0010102: lateral root morphogenesis	8.75E-03
65	GO:0010540: basipetal auxin transport	9.52E-03
66	GO:0006302: double-strand break repair	9.52E-03
67	GO:0048467: gynoecium development	9.52E-03
68	GO:0009933: meristem structural organization	9.52E-03
69	GO:0006364: rRNA processing	9.78E-03
70	GO:0046854: phosphatidylinositol phosphorylation	1.03E-02
71	GO:0009825: multidimensional cell growth	1.03E-02
72	GO:0080188: RNA-directed DNA methylation	1.03E-02
73	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.08E-02
74	GO:0006636: unsaturated fatty acid biosynthetic process	1.11E-02
75	GO:0006863: purine nucleobase transport	1.11E-02
76	GO:0019953: sexual reproduction	1.28E-02
77	GO:0006874: cellular calcium ion homeostasis	1.28E-02
78	GO:0051321: meiotic cell cycle	1.37E-02
79	GO:0006306: DNA methylation	1.37E-02
80	GO:0016226: iron-sulfur cluster assembly	1.46E-02
81	GO:0007005: mitochondrion organization	1.46E-02
82	GO:0009686: gibberellin biosynthetic process	1.56E-02
83	GO:0048443: stamen development	1.65E-02
84	GO:0070417: cellular response to cold	1.75E-02
85	GO:0000271: polysaccharide biosynthetic process	1.85E-02
86	GO:0010087: phloem or xylem histogenesis	1.85E-02
87	GO:0048653: anther development	1.85E-02
88	GO:0009958: positive gravitropism	1.95E-02
89	GO:0009741: response to brassinosteroid	1.95E-02
90	GO:0045489: pectin biosynthetic process	1.95E-02
91	GO:0010305: leaf vascular tissue pattern formation	1.95E-02
92	GO:0006351: transcription, DNA-templated	2.02E-02
93	GO:0007018: microtubule-based movement	2.05E-02
94	GO:0016567: protein ubiquitination	2.08E-02
95	GO:0009749: response to glucose	2.16E-02
96	GO:0008654: phospholipid biosynthetic process	2.16E-02
97	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.27E-02
98	GO:0071554: cell wall organization or biogenesis	2.27E-02
99	GO:0040008: regulation of growth	2.31E-02
100	GO:0010583: response to cyclopentenone	2.37E-02
101	GO:0031047: gene silencing by RNA	2.37E-02
102	GO:0032502: developmental process	2.37E-02
103	GO:0009828: plant-type cell wall loosening	2.60E-02
104	GO:0019760: glucosinolate metabolic process	2.60E-02
105	GO:0071555: cell wall organization	2.70E-02
106	GO:0006470: protein dephosphorylation	2.77E-02
107	GO:0000910: cytokinesis	2.83E-02
108	GO:0016126: sterol biosynthetic process	2.94E-02
109	GO:0010029: regulation of seed germination	3.06E-02
110	GO:0009627: systemic acquired resistance	3.19E-02
111	GO:0009733: response to auxin	3.19E-02
112	GO:0010411: xyloglucan metabolic process	3.31E-02
113	GO:0048573: photoperiodism, flowering	3.31E-02
114	GO:0015995: chlorophyll biosynthetic process	3.31E-02
115	GO:0016311: dephosphorylation	3.43E-02
116	GO:0048481: plant ovule development	3.56E-02
117	GO:0000160: phosphorelay signal transduction system	3.68E-02
118	GO:0009658: chloroplast organization	3.74E-02
119	GO:0048527: lateral root development	3.94E-02
120	GO:0009867: jasmonic acid mediated signaling pathway	4.21E-02
121	GO:0016051: carbohydrate biosynthetic process	4.21E-02
122	GO:0006355: regulation of transcription, DNA-templated	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
4	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
5	GO:0004401: histidinol-phosphatase activity	0.00E+00
6	GO:0004818: glutamate-tRNA ligase activity	2.29E-04
7	GO:0004832: valine-tRNA ligase activity	2.29E-04
8	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.29E-04
9	GO:0019156: isoamylase activity	5.10E-04
10	GO:0010296: prenylcysteine methylesterase activity	5.10E-04
11	GO:0004047: aminomethyltransferase activity	5.10E-04
12	GO:0052832: inositol monophosphate 3-phosphatase activity	5.10E-04
13	GO:0004817: cysteine-tRNA ligase activity	5.10E-04
14	GO:0004109: coproporphyrinogen oxidase activity	5.10E-04
15	GO:0008805: carbon-monoxide oxygenase activity	5.10E-04
16	GO:0008934: inositol monophosphate 1-phosphatase activity	5.10E-04
17	GO:0052833: inositol monophosphate 4-phosphatase activity	5.10E-04
18	GO:0009884: cytokinin receptor activity	5.10E-04
19	GO:0004722: protein serine/threonine phosphatase activity	7.14E-04
20	GO:0005034: osmosensor activity	8.29E-04
21	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	8.29E-04
22	GO:0004930: G-protein coupled receptor activity	1.57E-03
23	GO:0010011: auxin binding	1.57E-03
24	GO:0004812: aminoacyl-tRNA ligase activity	1.65E-03
25	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.01E-03
26	GO:0004556: alpha-amylase activity	2.48E-03
27	GO:0004518: nuclease activity	2.52E-03
28	GO:0019900: kinase binding	2.97E-03
29	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.97E-03
30	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.65E-03
31	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.18E-03
32	GO:0004673: protein histidine kinase activity	6.58E-03
33	GO:0000049: tRNA binding	8.00E-03
34	GO:0003725: double-stranded RNA binding	8.75E-03
35	GO:0000155: phosphorelay sensor kinase activity	8.75E-03
36	GO:0005217: intracellular ligand-gated ion channel activity	1.03E-02
37	GO:0003712: transcription cofactor activity	1.03E-02
38	GO:0004970: ionotropic glutamate receptor activity	1.03E-02
39	GO:0043424: protein histidine kinase binding	1.28E-02
40	GO:0005345: purine nucleobase transmembrane transporter activity	1.28E-02
41	GO:0003779: actin binding	1.35E-02
42	GO:0008408: 3'-5' exonuclease activity	1.37E-02
43	GO:0042803: protein homodimerization activity	1.38E-02
44	GO:0004871: signal transducer activity	1.38E-02
45	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.46E-02
46	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.95E-02
47	GO:0001085: RNA polymerase II transcription factor binding	1.95E-02
48	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.99E-02
49	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.27E-02
50	GO:0016759: cellulose synthase activity	2.60E-02
51	GO:0016791: phosphatase activity	2.60E-02
52	GO:0016413: O-acetyltransferase activity	2.83E-02
53	GO:0004721: phosphoprotein phosphatase activity	3.31E-02
54	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.31E-02
55	GO:0008236: serine-type peptidase activity	3.43E-02
56	GO:0004222: metalloendopeptidase activity	3.81E-02
57	GO:0030145: manganese ion binding	3.94E-02
58	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.94E-02
59	GO:0046983: protein dimerization activity	4.10E-02
60	GO:0003697: single-stranded DNA binding	4.21E-02
61	GO:0003993: acid phosphatase activity	4.34E-02
62	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.48E-02
63	GO:0004672: protein kinase activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0000791: euchromatin	2.29E-04
4	GO:0030870: Mre11 complex	5.10E-04
5	GO:0009569: chloroplast starch grain	5.10E-04
6	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.18E-03
7	GO:0000795: synaptonemal complex	2.01E-03
8	GO:0042644: chloroplast nucleoid	5.27E-03
9	GO:0016602: CCAAT-binding factor complex	8.75E-03
10	GO:0005875: microtubule associated complex	1.11E-02
11	GO:0000419: DNA-directed RNA polymerase V complex	1.11E-02
12	GO:0005871: kinesin complex	1.75E-02
13	GO:0000785: chromatin	2.37E-02
14	GO:0005667: transcription factor complex	3.19E-02
15	GO:0009707: chloroplast outer membrane	3.56E-02
16	GO:0009570: chloroplast stroma	3.75E-02
17	GO:0005874: microtubule	4.47E-02
18	GO:0005789: endoplasmic reticulum membrane	4.97E-02