co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0043392: negative regulation of DNA binding	0.00E+00
4	GO:2000469: negative regulation of peroxidase activity	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
9	GO:0046620: regulation of organ growth	8.02E-06
10	GO:0009733: response to auxin	3.96E-05
11	GO:0030488: tRNA methylation	1.85E-04
12	GO:0010480: microsporocyte differentiation	3.02E-04
13	GO:0015904: tetracycline transport	3.02E-04
14	GO:0000025: maltose catabolic process	3.02E-04
15	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.02E-04
16	GO:0030198: extracellular matrix organization	3.02E-04
17	GO:0046520: sphingoid biosynthetic process	3.02E-04
18	GO:0071497: cellular response to freezing	6.60E-04
19	GO:1900033: negative regulation of trichome patterning	6.60E-04
20	GO:0031648: protein destabilization	6.60E-04
21	GO:0006568: tryptophan metabolic process	6.60E-04
22	GO:0006423: cysteinyl-tRNA aminoacylation	6.60E-04
23	GO:0006741: NADP biosynthetic process	6.60E-04
24	GO:0005983: starch catabolic process	8.22E-04
25	GO:0009734: auxin-activated signaling pathway	8.32E-04
26	GO:0006006: glucose metabolic process	9.29E-04
27	GO:0010102: lateral root morphogenesis	9.29E-04
28	GO:0010628: positive regulation of gene expression	9.29E-04
29	GO:0071398: cellular response to fatty acid	1.07E-03
30	GO:0019674: NAD metabolic process	1.07E-03
31	GO:0033591: response to L-ascorbic acid	1.07E-03
32	GO:0009416: response to light stimulus	1.31E-03
33	GO:0010321: regulation of vegetative phase change	1.53E-03
34	GO:0019363: pyridine nucleotide biosynthetic process	1.53E-03
35	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.53E-03
36	GO:1990019: protein storage vacuole organization	1.53E-03
37	GO:0010306: rhamnogalacturonan II biosynthetic process	1.53E-03
38	GO:0009739: response to gibberellin	1.75E-03
39	GO:0042938: dipeptide transport	2.06E-03
40	GO:0009755: hormone-mediated signaling pathway	2.06E-03
41	GO:1901141: regulation of lignin biosynthetic process	2.06E-03
42	GO:0048629: trichome patterning	2.06E-03
43	GO:0042274: ribosomal small subunit biogenesis	2.06E-03
44	GO:0009686: gibberellin biosynthetic process	2.07E-03
45	GO:0048497: maintenance of floral organ identity	2.63E-03
46	GO:0010438: cellular response to sulfur starvation	2.63E-03
47	GO:0045487: gibberellin catabolic process	2.63E-03
48	GO:0016131: brassinosteroid metabolic process	2.63E-03
49	GO:0009741: response to brassinosteroid	2.84E-03
50	GO:0010405: arabinogalactan protein metabolic process	3.24E-03
51	GO:0042549: photosystem II stabilization	3.24E-03
52	GO:0009959: negative gravitropism	3.24E-03
53	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.24E-03
54	GO:0009913: epidermal cell differentiation	3.24E-03
55	GO:1902456: regulation of stomatal opening	3.24E-03
56	GO:0032502: developmental process	3.74E-03
57	GO:0010583: response to cyclopentenone	3.74E-03
58	GO:0048509: regulation of meristem development	3.90E-03
59	GO:0009099: valine biosynthetic process	3.90E-03
60	GO:0042026: protein refolding	3.90E-03
61	GO:0031930: mitochondria-nucleus signaling pathway	3.90E-03
62	GO:0009082: branched-chain amino acid biosynthetic process	3.90E-03
63	GO:0006458: 'de novo' protein folding	3.90E-03
64	GO:1901657: glycosyl compound metabolic process	3.99E-03
65	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.20E-03
66	GO:0010252: auxin homeostasis	4.25E-03
67	GO:0030307: positive regulation of cell growth	4.60E-03
68	GO:0010161: red light signaling pathway	4.60E-03
69	GO:0006955: immune response	4.60E-03
70	GO:0048437: floral organ development	4.60E-03
71	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	4.60E-03
72	GO:0009704: de-etiolation	5.35E-03
73	GO:2000070: regulation of response to water deprivation	5.35E-03
74	GO:0000105: histidine biosynthetic process	5.35E-03
75	GO:0009819: drought recovery	5.35E-03
76	GO:0010439: regulation of glucosinolate biosynthetic process	5.35E-03
77	GO:0009690: cytokinin metabolic process	5.35E-03
78	GO:0045892: negative regulation of transcription, DNA-templated	5.37E-03
79	GO:0010099: regulation of photomorphogenesis	6.13E-03
80	GO:0009097: isoleucine biosynthetic process	6.13E-03
81	GO:0010100: negative regulation of photomorphogenesis	6.13E-03
82	GO:0006783: heme biosynthetic process	6.95E-03
83	GO:0000902: cell morphogenesis	6.95E-03
84	GO:0009051: pentose-phosphate shunt, oxidative branch	6.95E-03
85	GO:0051865: protein autoubiquitination	6.95E-03
86	GO:0040008: regulation of growth	7.06E-03
87	GO:0043067: regulation of programmed cell death	7.80E-03
88	GO:0009098: leucine biosynthetic process	7.80E-03
89	GO:0031425: chloroplast RNA processing	7.80E-03
90	GO:0009753: response to jasmonic acid	8.02E-03
91	GO:0009641: shade avoidance	8.70E-03
92	GO:0009870: defense response signaling pathway, resistance gene-dependent	8.70E-03
93	GO:0048229: gametophyte development	9.63E-03
94	GO:0010015: root morphogenesis	9.63E-03
95	GO:0000038: very long-chain fatty acid metabolic process	9.63E-03
96	GO:0009773: photosynthetic electron transport in photosystem I	9.63E-03
97	GO:0009682: induced systemic resistance	9.63E-03
98	GO:0009073: aromatic amino acid family biosynthetic process	9.63E-03
99	GO:0006631: fatty acid metabolic process	9.98E-03
100	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.06E-02
101	GO:0015706: nitrate transport	1.06E-02
102	GO:0009926: auxin polar transport	1.08E-02
103	GO:0009640: photomorphogenesis	1.08E-02
104	GO:0010075: regulation of meristem growth	1.16E-02
105	GO:0009725: response to hormone	1.16E-02
106	GO:0009767: photosynthetic electron transport chain	1.16E-02
107	GO:0010588: cotyledon vascular tissue pattern formation	1.16E-02
108	GO:0009934: regulation of meristem structural organization	1.26E-02
109	GO:0006855: drug transmembrane transport	1.27E-02
110	GO:0090351: seedling development	1.37E-02
111	GO:0019762: glucosinolate catabolic process	1.48E-02
112	GO:0000162: tryptophan biosynthetic process	1.48E-02
113	GO:0006351: transcription, DNA-templated	1.53E-02
114	GO:0006857: oligopeptide transport	1.57E-02
115	GO:0009723: response to ethylene	1.57E-02
116	GO:0005992: trehalose biosynthetic process	1.59E-02
117	GO:0010187: negative regulation of seed germination	1.59E-02
118	GO:0080147: root hair cell development	1.59E-02
119	GO:0016998: cell wall macromolecule catabolic process	1.82E-02
120	GO:0048511: rhythmic process	1.82E-02
121	GO:0010431: seed maturation	1.82E-02
122	GO:0061077: chaperone-mediated protein folding	1.82E-02
123	GO:0048278: vesicle docking	1.82E-02
124	GO:0016114: terpenoid biosynthetic process	1.82E-02
125	GO:0031348: negative regulation of defense response	1.95E-02
126	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.95E-02
127	GO:0009625: response to insect	2.07E-02
128	GO:0009693: ethylene biosynthetic process	2.07E-02
129	GO:0080022: primary root development	2.46E-02
130	GO:0010087: phloem or xylem histogenesis	2.46E-02
131	GO:0010118: stomatal movement	2.46E-02
132	GO:0048653: anther development	2.46E-02
133	GO:0042335: cuticle development	2.46E-02
134	GO:0010197: polar nucleus fusion	2.59E-02
135	GO:0010182: sugar mediated signaling pathway	2.59E-02
136	GO:0048868: pollen tube development	2.59E-02
137	GO:0010268: brassinosteroid homeostasis	2.59E-02
138	GO:0009960: endosperm development	2.59E-02
139	GO:0010305: leaf vascular tissue pattern formation	2.59E-02
140	GO:0016042: lipid catabolic process	2.71E-02
141	GO:0061025: membrane fusion	2.73E-02
142	GO:0042752: regulation of circadian rhythm	2.73E-02
143	GO:0009646: response to absence of light	2.73E-02
144	GO:0048544: recognition of pollen	2.73E-02
145	GO:0009751: response to salicylic acid	2.75E-02
146	GO:0009845: seed germination	2.83E-02
147	GO:0048825: cotyledon development	2.87E-02
148	GO:0071554: cell wall organization or biogenesis	3.01E-02
149	GO:0000302: response to reactive oxygen species	3.01E-02
150	GO:0009567: double fertilization forming a zygote and endosperm	3.46E-02
151	GO:0010150: leaf senescence	3.61E-02
152	GO:0009451: RNA modification	3.69E-02
153	GO:0010027: thylakoid membrane organization	3.92E-02
154	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.97E-02
155	GO:0010029: regulation of seed germination	4.07E-02
156	GO:0006470: protein dephosphorylation	4.12E-02
157	GO:0006906: vesicle fusion	4.24E-02
158	GO:0015995: chlorophyll biosynthetic process	4.40E-02
159	GO:0000160: phosphorelay signal transduction system	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0071633: dihydroceramidase activity	0.00E+00
4	GO:0042736: NADH kinase activity	3.02E-04
5	GO:0000170: sphingosine hydroxylase activity	3.02E-04
6	GO:0050139: nicotinate-N-glucosyltransferase activity	3.02E-04
7	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.02E-04
8	GO:0042834: peptidoglycan binding	3.02E-04
9	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.02E-04
10	GO:0050308: sugar-phosphatase activity	3.02E-04
11	GO:0010313: phytochrome binding	3.02E-04
12	GO:0004134: 4-alpha-glucanotransferase activity	3.02E-04
13	GO:0019203: carbohydrate phosphatase activity	3.02E-04
14	GO:0008395: steroid hydroxylase activity	3.02E-04
15	GO:0045543: gibberellin 2-beta-dioxygenase activity	6.60E-04
16	GO:0004817: cysteine-tRNA ligase activity	6.60E-04
17	GO:0042284: sphingolipid delta-4 desaturase activity	6.60E-04
18	GO:0008493: tetracycline transporter activity	6.60E-04
19	GO:0005528: FK506 binding	1.44E-03
20	GO:0052656: L-isoleucine transaminase activity	1.53E-03
21	GO:0052654: L-leucine transaminase activity	1.53E-03
22	GO:0052655: L-valine transaminase activity	1.53E-03
23	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.53E-03
24	GO:0046556: alpha-L-arabinofuranosidase activity	2.06E-03
25	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.06E-03
26	GO:0042936: dipeptide transporter activity	2.06E-03
27	GO:0004084: branched-chain-amino-acid transaminase activity	2.06E-03
28	GO:0016298: lipase activity	2.49E-03
29	GO:0016688: L-ascorbate peroxidase activity	3.24E-03
30	GO:2001070: starch binding	3.24E-03
31	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.24E-03
32	GO:0004709: MAP kinase kinase kinase activity	3.24E-03
33	GO:0004130: cytochrome-c peroxidase activity	3.24E-03
34	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.90E-03
35	GO:0016832: aldehyde-lyase activity	3.90E-03
36	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.20E-03
37	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.14E-03
38	GO:0102483: scopolin beta-glucosidase activity	5.97E-03
39	GO:0008173: RNA methyltransferase activity	6.13E-03
40	GO:0003951: NAD+ kinase activity	6.13E-03
41	GO:0015238: drug transmembrane transporter activity	6.94E-03
42	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.95E-03
43	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.95E-03
44	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	7.65E-03
45	GO:0004805: trehalose-phosphatase activity	8.70E-03
46	GO:0030234: enzyme regulator activity	8.70E-03
47	GO:0008422: beta-glucosidase activity	9.16E-03
48	GO:0044183: protein binding involved in protein folding	9.63E-03
49	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.06E-02
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.27E-02
51	GO:0008146: sulfotransferase activity	1.37E-02
52	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.48E-02
53	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.48E-02
54	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.48E-02
55	GO:0051536: iron-sulfur cluster binding	1.59E-02
56	GO:0031418: L-ascorbic acid binding	1.59E-02
57	GO:0005345: purine nucleobase transmembrane transporter activity	1.71E-02
58	GO:0003964: RNA-directed DNA polymerase activity	1.82E-02
59	GO:0010333: terpene synthase activity	1.82E-02
60	GO:0033612: receptor serine/threonine kinase binding	1.82E-02
61	GO:0005215: transporter activity	1.95E-02
62	GO:0016874: ligase activity	1.97E-02
63	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.16E-02
64	GO:0003727: single-stranded RNA binding	2.20E-02
65	GO:0008514: organic anion transmembrane transporter activity	2.20E-02
66	GO:0004871: signal transducer activity	2.29E-02
67	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.47E-02
68	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.59E-02
69	GO:0030246: carbohydrate binding	2.67E-02
70	GO:0004872: receptor activity	2.87E-02
71	GO:0000156: phosphorelay response regulator activity	3.31E-02
72	GO:0015297: antiporter activity	3.44E-02
73	GO:0016759: cellulose synthase activity	3.46E-02
74	GO:0005200: structural constituent of cytoskeleton	3.61E-02
75	GO:0016413: O-acetyltransferase activity	3.76E-02
76	GO:0005506: iron ion binding	4.71E-02
77	GO:0044212: transcription regulatory region DNA binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009654: photosystem II oxygen evolving complex	1.29E-04
2	GO:0019898: extrinsic component of membrane	3.60E-04
3	GO:0009544: chloroplast ATP synthase complex	2.06E-03
4	GO:0009543: chloroplast thylakoid lumen	4.97E-03
5	GO:0009501: amyloplast	5.35E-03
6	GO:0010494: cytoplasmic stress granule	6.95E-03
7	GO:0005578: proteinaceous extracellular matrix	1.16E-02
8	GO:0030095: chloroplast photosystem II	1.26E-02
9	GO:0012505: endomembrane system	2.03E-02
10	GO:0009534: chloroplast thylakoid	2.27E-02
11	GO:0005770: late endosome	2.59E-02
12	GO:0000932: P-body	3.92E-02
13	GO:0046658: anchored component of plasma membrane	4.75E-02