co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009606: tropism	0.00E+00
2	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.35E-04
3	GO:0010115: regulation of abscisic acid biosynthetic process	3.11E-04
4	GO:0010541: acropetal auxin transport	3.11E-04
5	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.11E-04
6	GO:0048255: mRNA stabilization	3.11E-04
7	GO:0080175: phragmoplast microtubule organization	3.11E-04
8	GO:0006468: protein phosphorylation	4.90E-04
9	GO:0006013: mannose metabolic process	5.13E-04
10	GO:0009650: UV protection	7.34E-04
11	GO:1902290: positive regulation of defense response to oomycetes	7.34E-04
12	GO:0009958: positive gravitropism	9.40E-04
13	GO:0002229: defense response to oomycetes	1.15E-03
14	GO:0016558: protein import into peroxisome matrix	1.23E-03
15	GO:0051225: spindle assembly	1.23E-03
16	GO:0009616: virus induced gene silencing	1.23E-03
17	GO:0071493: cellular response to UV-B	1.23E-03
18	GO:0006561: proline biosynthetic process	1.51E-03
19	GO:0009959: negative gravitropism	1.51E-03
20	GO:0035194: posttranscriptional gene silencing by RNA	1.51E-03
21	GO:0010315: auxin efflux	1.51E-03
22	GO:0007623: circadian rhythm	1.76E-03
23	GO:0009451: RNA modification	1.81E-03
24	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.81E-03
25	GO:0007166: cell surface receptor signaling pathway	2.08E-03
26	GO:0006401: RNA catabolic process	2.12E-03
27	GO:0010196: nonphotochemical quenching	2.12E-03
28	GO:0019745: pentacyclic triterpenoid biosynthetic process	2.12E-03
29	GO:0034968: histone lysine methylation	2.46E-03
30	GO:0048766: root hair initiation	2.46E-03
31	GO:0007389: pattern specification process	2.81E-03
32	GO:0009416: response to light stimulus	3.02E-03
33	GO:0009821: alkaloid biosynthetic process	3.17E-03
34	GO:0016571: histone methylation	3.55E-03
35	GO:0008202: steroid metabolic process	3.55E-03
36	GO:1900426: positive regulation of defense response to bacterium	3.55E-03
37	GO:0009688: abscisic acid biosynthetic process	3.95E-03
38	GO:0031347: regulation of defense response	4.19E-03
39	GO:1903507: negative regulation of nucleic acid-templated transcription	4.36E-03
40	GO:0009750: response to fructose	4.36E-03
41	GO:0016485: protein processing	4.36E-03
42	GO:0010540: basipetal auxin transport	5.68E-03
43	GO:0007010: cytoskeleton organization	7.11E-03
44	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.67E-03
45	GO:0010082: regulation of root meristem growth	9.21E-03
46	GO:0009693: ethylene biosynthetic process	9.21E-03
47	GO:0042127: regulation of cell proliferation	9.77E-03
48	GO:0006284: base-excision repair	9.77E-03
49	GO:0000271: polysaccharide biosynthetic process	1.09E-02
50	GO:0010051: xylem and phloem pattern formation	1.09E-02
51	GO:0008360: regulation of cell shape	1.15E-02
52	GO:0010182: sugar mediated signaling pathway	1.15E-02
53	GO:0009741: response to brassinosteroid	1.15E-02
54	GO:0045489: pectin biosynthetic process	1.15E-02
55	GO:0006635: fatty acid beta-oxidation	1.34E-02
56	GO:0080156: mitochondrial mRNA modification	1.34E-02
57	GO:0009630: gravitropism	1.40E-02
58	GO:0009639: response to red or far red light	1.53E-02
59	GO:0010252: auxin homeostasis	1.53E-02
60	GO:0016567: protein ubiquitination	1.54E-02
61	GO:0010027: thylakoid membrane organization	1.73E-02
62	GO:0008219: cell death	2.09E-02
63	GO:0009832: plant-type cell wall biogenesis	2.17E-02
64	GO:0048767: root hair elongation	2.17E-02
65	GO:0009834: plant-type secondary cell wall biogenesis	2.24E-02
66	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.28E-02
67	GO:0016051: carbohydrate biosynthetic process	2.48E-02
68	GO:0009853: photorespiration	2.48E-02
69	GO:0006897: endocytosis	2.80E-02
70	GO:0009926: auxin polar transport	2.97E-02
71	GO:0009793: embryo development ending in seed dormancy	3.08E-02
72	GO:0016042: lipid catabolic process	3.16E-02
73	GO:0071555: cell wall organization	3.31E-02
74	GO:0006260: DNA replication	3.40E-02
75	GO:0008152: metabolic process	3.59E-02
76	GO:0009736: cytokinin-activated signaling pathway	3.67E-02
77	GO:0006364: rRNA processing	3.67E-02
78	GO:0018105: peptidyl-serine phosphorylation	4.81E-02
79	GO:0051726: regulation of cell cycle	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0098519: nucleotide phosphatase activity, acting on free nucleotides	0.00E+00
2	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
3	GO:0008859: exoribonuclease II activity	0.00E+00
4	GO:0016871: cycloartenol synthase activity	0.00E+00
5	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
6	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	1.35E-04
7	GO:0017091: AU-rich element binding	1.35E-04
8	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	1.35E-04
9	GO:0008327: methyl-CpG binding	2.34E-04
10	GO:0015929: hexosaminidase activity	3.11E-04
11	GO:0004563: beta-N-acetylhexosaminidase activity	3.11E-04
12	GO:0004674: protein serine/threonine kinase activity	4.41E-04
13	GO:0010429: methyl-CpNpN binding	5.13E-04
14	GO:0010428: methyl-CpNpG binding	5.13E-04
15	GO:0008725: DNA-3-methyladenine glycosylase activity	1.23E-03
16	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.61E-03
17	GO:0004559: alpha-mannosidase activity	1.81E-03
18	GO:0019899: enzyme binding	2.12E-03
19	GO:0005524: ATP binding	2.60E-03
20	GO:0008142: oxysterol binding	2.81E-03
21	GO:0003724: RNA helicase activity	2.81E-03
22	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	2.81E-03
23	GO:0009672: auxin:proton symporter activity	3.55E-03
24	GO:0016844: strictosidine synthase activity	3.55E-03
25	GO:0015020: glucuronosyltransferase activity	3.95E-03
26	GO:0004713: protein tyrosine kinase activity	3.95E-03
27	GO:0016301: kinase activity	4.18E-03
28	GO:0004672: protein kinase activity	4.35E-03
29	GO:0004022: alcohol dehydrogenase (NAD) activity	5.22E-03
30	GO:0009982: pseudouridine synthase activity	5.22E-03
31	GO:0000175: 3'-5'-exoribonuclease activity	5.22E-03
32	GO:0010329: auxin efflux transmembrane transporter activity	5.22E-03
33	GO:0004871: signal transducer activity	5.35E-03
34	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.68E-03
35	GO:0080043: quercetin 3-O-glucosyltransferase activity	6.05E-03
36	GO:0080044: quercetin 7-O-glucosyltransferase activity	6.05E-03
37	GO:0003714: transcription corepressor activity	7.11E-03
38	GO:0004519: endonuclease activity	7.32E-03
39	GO:0016758: transferase activity, transferring hexosyl groups	8.07E-03
40	GO:0035251: UDP-glucosyltransferase activity	8.14E-03
41	GO:0004540: ribonuclease activity	8.14E-03
42	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	8.67E-03
43	GO:0018024: histone-lysine N-methyltransferase activity	1.03E-02
44	GO:0003723: RNA binding	1.13E-02
45	GO:0008080: N-acetyltransferase activity	1.15E-02
46	GO:0008017: microtubule binding	1.20E-02
47	GO:0019901: protein kinase binding	1.27E-02
48	GO:0008194: UDP-glycosyltransferase activity	1.28E-02
49	GO:0008237: metallopeptidase activity	1.60E-02
50	GO:0008168: methyltransferase activity	1.71E-02
51	GO:0016788: hydrolase activity, acting on ester bonds	1.81E-02
52	GO:0016757: transferase activity, transferring glycosyl groups	1.86E-02
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.94E-02
54	GO:0004721: phosphoprotein phosphatase activity	1.95E-02
55	GO:0004806: triglyceride lipase activity	1.95E-02
56	GO:0008236: serine-type peptidase activity	2.02E-02
57	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.24E-02
58	GO:0004222: metalloendopeptidase activity	2.24E-02
59	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.64E-02
60	GO:0042393: histone binding	2.72E-02
61	GO:0051537: 2 iron, 2 sulfur cluster binding	3.14E-02
62	GO:0043621: protein self-association	3.14E-02
63	GO:0035091: phosphatidylinositol binding	3.14E-02
64	GO:0003777: microtubule motor activity	3.95E-02
65	GO:0008289: lipid binding	4.51E-02
66	GO:0051082: unfolded protein binding	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0010370: perinucleolar chromocenter	1.35E-04
2	GO:0012506: vesicle membrane	1.35E-04
3	GO:0005819: spindle	3.16E-04
4	GO:0016328: lateral plasma membrane	5.13E-04
5	GO:0070652: HAUS complex	5.13E-04
6	GO:0000178: exosome (RNase complex)	1.23E-03
7	GO:0010005: cortical microtubule, transverse to long axis	1.81E-03
8	GO:0009986: cell surface	2.12E-03
9	GO:0005720: nuclear heterochromatin	3.17E-03
10	GO:0043231: intracellular membrane-bounded organelle	7.45E-03
11	GO:0045271: respiratory chain complex I	7.62E-03
12	GO:0000775: chromosome, centromeric region	8.67E-03
13	GO:0009524: phragmoplast	8.74E-03
14	GO:0071944: cell periphery	1.46E-02
15	GO:0000932: P-body	1.73E-02
16	GO:0005874: microtubule	2.13E-02
17	GO:0005802: trans-Golgi network	2.47E-02
18	GO:0031977: thylakoid lumen	2.80E-02
19	GO:0005768: endosome	2.90E-02
20	GO:0090406: pollen tube	2.97E-02
21	GO:0031966: mitochondrial membrane	3.49E-02
22	GO:0005886: plasma membrane	4.05E-02
23	GO:0005747: mitochondrial respiratory chain complex I	4.23E-02
24	GO:0010008: endosome membrane	4.23E-02
25	GO:0005834: heterotrimeric G-protein complex	4.32E-02