co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0010203: response to very low fluence red light stimulus	0.00E+00
3	GO:0007037: vacuolar phosphate transport	0.00E+00
4	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
5	GO:0006114: glycerol biosynthetic process	0.00E+00
6	GO:1905177: tracheary element differentiation	0.00E+00
7	GO:0006399: tRNA metabolic process	0.00E+00
8	GO:0045038: protein import into chloroplast thylakoid membrane	3.06E-07
9	GO:0090351: seedling development	2.98E-05
10	GO:0045010: actin nucleation	1.56E-04
11	GO:1902458: positive regulation of stomatal opening	1.93E-04
12	GO:0015969: guanosine tetraphosphate metabolic process	1.93E-04
13	GO:0000012: single strand break repair	1.93E-04
14	GO:0015798: myo-inositol transport	1.93E-04
15	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.93E-04
16	GO:0043087: regulation of GTPase activity	1.93E-04
17	GO:0000066: mitochondrial ornithine transport	1.93E-04
18	GO:0071482: cellular response to light stimulus	1.95E-04
19	GO:0009793: embryo development ending in seed dormancy	2.19E-04
20	GO:0006352: DNA-templated transcription, initiation	3.85E-04
21	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.33E-04
22	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.33E-04
23	GO:0046741: transport of virus in host, tissue to tissue	4.33E-04
24	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	4.33E-04
25	GO:0006435: threonyl-tRNA aminoacylation	4.33E-04
26	GO:1900871: chloroplast mRNA modification	4.33E-04
27	GO:0000256: allantoin catabolic process	4.33E-04
28	GO:0009767: photosynthetic electron transport chain	5.01E-04
29	GO:0000913: preprophase band assembly	7.06E-04
30	GO:0031022: nuclear migration along microfilament	7.06E-04
31	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.06E-04
32	GO:0010136: ureide catabolic process	7.06E-04
33	GO:0017006: protein-tetrapyrrole linkage	7.06E-04
34	GO:0010623: programmed cell death involved in cell development	7.06E-04
35	GO:0005977: glycogen metabolic process	7.06E-04
36	GO:0009584: detection of visible light	1.01E-03
37	GO:0006145: purine nucleobase catabolic process	1.01E-03
38	GO:0042989: sequestering of actin monomers	1.01E-03
39	GO:0009226: nucleotide-sugar biosynthetic process	1.01E-03
40	GO:0043572: plastid fission	1.01E-03
41	GO:2001141: regulation of RNA biosynthetic process	1.01E-03
42	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.01E-03
43	GO:0009658: chloroplast organization	1.08E-03
44	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.30E-03
45	GO:0051781: positive regulation of cell division	1.34E-03
46	GO:0048442: sepal development	1.34E-03
47	GO:0051322: anaphase	1.34E-03
48	GO:0006661: phosphatidylinositol biosynthetic process	1.34E-03
49	GO:0010508: positive regulation of autophagy	1.34E-03
50	GO:0071483: cellular response to blue light	1.34E-03
51	GO:0010021: amylopectin biosynthetic process	1.34E-03
52	GO:0007059: chromosome segregation	1.62E-03
53	GO:0007018: microtubule-based movement	1.62E-03
54	GO:0016123: xanthophyll biosynthetic process	1.70E-03
55	GO:0080110: sporopollenin biosynthetic process	1.70E-03
56	GO:0030041: actin filament polymerization	1.70E-03
57	GO:0009904: chloroplast accumulation movement	1.70E-03
58	GO:0016032: viral process	1.98E-03
59	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.10E-03
60	GO:0010190: cytochrome b6f complex assembly	2.10E-03
61	GO:0010090: trichome morphogenesis	2.11E-03
62	GO:0000910: cytokinesis	2.52E-03
63	GO:0010076: maintenance of floral meristem identity	2.52E-03
64	GO:0017148: negative regulation of translation	2.52E-03
65	GO:0009903: chloroplast avoidance movement	2.52E-03
66	GO:0009854: oxidative photosynthetic carbon pathway	2.52E-03
67	GO:0010161: red light signaling pathway	2.96E-03
68	GO:0009395: phospholipid catabolic process	2.96E-03
69	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.96E-03
70	GO:0051510: regulation of unidimensional cell growth	2.96E-03
71	GO:0048564: photosystem I assembly	3.43E-03
72	GO:0042255: ribosome assembly	3.43E-03
73	GO:0006353: DNA-templated transcription, termination	3.43E-03
74	GO:2000070: regulation of response to water deprivation	3.43E-03
75	GO:0010492: maintenance of shoot apical meristem identity	3.43E-03
76	GO:0009853: photorespiration	4.40E-03
77	GO:0046685: response to arsenic-containing substance	4.44E-03
78	GO:0009821: alkaloid biosynthetic process	4.44E-03
79	GO:0048507: meristem development	4.44E-03
80	GO:0010206: photosystem II repair	4.44E-03
81	GO:0000373: Group II intron splicing	4.44E-03
82	GO:0009638: phototropism	4.99E-03
83	GO:0009098: leucine biosynthetic process	4.99E-03
84	GO:0008202: steroid metabolic process	4.99E-03
85	GO:0006259: DNA metabolic process	5.55E-03
86	GO:0048441: petal development	5.55E-03
87	GO:0006265: DNA topological change	6.13E-03
88	GO:0045037: protein import into chloroplast stroma	6.73E-03
89	GO:0030036: actin cytoskeleton organization	7.36E-03
90	GO:0009585: red, far-red light phototransduction	7.63E-03
91	GO:0006302: double-strand break repair	8.01E-03
92	GO:0048440: carpel development	8.01E-03
93	GO:0010020: chloroplast fission	8.01E-03
94	GO:0010207: photosystem II assembly	8.01E-03
95	GO:0006833: water transport	9.35E-03
96	GO:0007010: cytoskeleton organization	1.01E-02
97	GO:0051302: regulation of cell division	1.08E-02
98	GO:0006825: copper ion transport	1.08E-02
99	GO:0010431: seed maturation	1.15E-02
100	GO:0015992: proton transport	1.15E-02
101	GO:0006730: one-carbon metabolic process	1.23E-02
102	GO:0031348: negative regulation of defense response	1.23E-02
103	GO:0006629: lipid metabolic process	1.24E-02
104	GO:0010089: xylem development	1.39E-02
105	GO:0010584: pollen exine formation	1.39E-02
106	GO:0048443: stamen development	1.39E-02
107	GO:0019722: calcium-mediated signaling	1.39E-02
108	GO:0009306: protein secretion	1.39E-02
109	GO:0008152: metabolic process	1.40E-02
110	GO:0016117: carotenoid biosynthetic process	1.47E-02
111	GO:0008033: tRNA processing	1.55E-02
112	GO:0034220: ion transmembrane transport	1.55E-02
113	GO:0010268: brassinosteroid homeostasis	1.63E-02
114	GO:0045489: pectin biosynthetic process	1.63E-02
115	GO:0010197: polar nucleus fusion	1.63E-02
116	GO:0046323: glucose import	1.63E-02
117	GO:0006413: translational initiation	1.76E-02
118	GO:0019252: starch biosynthetic process	1.81E-02
119	GO:0008654: phospholipid biosynthetic process	1.81E-02
120	GO:0000302: response to reactive oxygen species	1.90E-02
121	GO:0016132: brassinosteroid biosynthetic process	1.90E-02
122	GO:0032502: developmental process	1.99E-02
123	GO:0009630: gravitropism	1.99E-02
124	GO:0007264: small GTPase mediated signal transduction	1.99E-02
125	GO:0019761: glucosinolate biosynthetic process	1.99E-02
126	GO:0007166: cell surface receptor signaling pathway	2.16E-02
127	GO:0016125: sterol metabolic process	2.18E-02
128	GO:0007267: cell-cell signaling	2.27E-02
129	GO:0009738: abscisic acid-activated signaling pathway	2.45E-02
130	GO:0016126: sterol biosynthetic process	2.47E-02
131	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.57E-02
132	GO:0010029: regulation of seed germination	2.57E-02
133	GO:0048573: photoperiodism, flowering	2.77E-02
134	GO:0016311: dephosphorylation	2.88E-02
135	GO:0018298: protein-chromophore linkage	2.98E-02
136	GO:0006468: protein phosphorylation	3.16E-02
137	GO:0010218: response to far red light	3.20E-02
138	GO:0007568: aging	3.31E-02
139	GO:0048527: lateral root development	3.31E-02
140	GO:0055085: transmembrane transport	3.43E-02
141	GO:0045087: innate immune response	3.53E-02
142	GO:0009637: response to blue light	3.53E-02
143	GO:0006839: mitochondrial transport	3.87E-02
144	GO:0046777: protein autophosphorylation	3.87E-02
145	GO:0009640: photomorphogenesis	4.23E-02
146	GO:0010114: response to red light	4.23E-02
147	GO:0042546: cell wall biogenesis	4.35E-02
148	GO:0009644: response to high light intensity	4.47E-02
149	GO:0000165: MAPK cascade	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
8	GO:0050613: delta14-sterol reductase activity	0.00E+00
9	GO:0001053: plastid sigma factor activity	2.77E-05
10	GO:0016987: sigma factor activity	2.77E-05
11	GO:0048038: quinone binding	1.65E-04
12	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.93E-04
13	GO:0004451: isocitrate lyase activity	1.93E-04
14	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.93E-04
15	GO:0005290: L-histidine transmembrane transporter activity	1.93E-04
16	GO:0004008: copper-exporting ATPase activity	1.93E-04
17	GO:0016618: hydroxypyruvate reductase activity	1.93E-04
18	GO:0031516: far-red light photoreceptor activity	1.93E-04
19	GO:0004672: protein kinase activity	2.44E-04
20	GO:0009883: red or far-red light photoreceptor activity	4.33E-04
21	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	4.33E-04
22	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.33E-04
23	GO:0000064: L-ornithine transmembrane transporter activity	4.33E-04
24	GO:0048531: beta-1,3-galactosyltransferase activity	4.33E-04
25	GO:0004829: threonine-tRNA ligase activity	4.33E-04
26	GO:0019156: isoamylase activity	4.33E-04
27	GO:0008728: GTP diphosphokinase activity	4.33E-04
28	GO:0005366: myo-inositol:proton symporter activity	4.33E-04
29	GO:0010291: carotene beta-ring hydroxylase activity	4.33E-04
30	GO:0015144: carbohydrate transmembrane transporter activity	4.47E-04
31	GO:0005351: sugar:proton symporter activity	5.38E-04
32	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.65E-04
33	GO:0008430: selenium binding	7.06E-04
34	GO:0004180: carboxypeptidase activity	7.06E-04
35	GO:0003861: 3-isopropylmalate dehydratase activity	7.06E-04
36	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.06E-04
37	GO:0008020: G-protein coupled photoreceptor activity	7.06E-04
38	GO:0030267: glyoxylate reductase (NADP) activity	7.06E-04
39	GO:0005525: GTP binding	9.67E-04
40	GO:0015189: L-lysine transmembrane transporter activity	1.01E-03
41	GO:0005354: galactose transmembrane transporter activity	1.01E-03
42	GO:0015181: arginine transmembrane transporter activity	1.01E-03
43	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.01E-03
44	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.01E-03
45	GO:0004792: thiosulfate sulfurtransferase activity	1.01E-03
46	GO:0016836: hydro-lyase activity	1.34E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.34E-03
48	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.34E-03
49	GO:0008374: O-acyltransferase activity	1.70E-03
50	GO:0003785: actin monomer binding	1.70E-03
51	GO:0004556: alpha-amylase activity	2.10E-03
52	GO:0009927: histidine phosphotransfer kinase activity	2.52E-03
53	GO:0003924: GTPase activity	2.69E-03
54	GO:0004427: inorganic diphosphatase activity	2.96E-03
55	GO:0008236: serine-type peptidase activity	3.30E-03
56	GO:0008312: 7S RNA binding	3.43E-03
57	GO:0043022: ribosome binding	3.43E-03
58	GO:0008017: microtubule binding	3.49E-03
59	GO:0008142: oxysterol binding	3.93E-03
60	GO:0005375: copper ion transmembrane transporter activity	3.93E-03
61	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	3.93E-03
62	GO:0042802: identical protein binding	4.46E-03
63	GO:0004743: pyruvate kinase activity	4.99E-03
64	GO:0030955: potassium ion binding	4.99E-03
65	GO:0016844: strictosidine synthase activity	4.99E-03
66	GO:0004673: protein histidine kinase activity	5.55E-03
67	GO:0000155: phosphorelay sensor kinase activity	7.36E-03
68	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.36E-03
69	GO:0008081: phosphoric diester hydrolase activity	7.36E-03
70	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.63E-03
71	GO:0003690: double-stranded DNA binding	7.90E-03
72	GO:0003777: microtubule motor activity	8.45E-03
73	GO:0016491: oxidoreductase activity	8.59E-03
74	GO:0004871: signal transducer activity	1.01E-02
75	GO:0016874: ligase activity	1.02E-02
76	GO:0003727: single-stranded RNA binding	1.39E-02
77	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.40E-02
78	GO:0008080: N-acetyltransferase activity	1.63E-02
79	GO:0004527: exonuclease activity	1.63E-02
80	GO:0005355: glucose transmembrane transporter activity	1.72E-02
81	GO:0050662: coenzyme binding	1.72E-02
82	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.76E-02
83	GO:0019901: protein kinase binding	1.81E-02
84	GO:0016787: hydrolase activity	1.99E-02
85	GO:0003824: catalytic activity	2.14E-02
86	GO:0003743: translation initiation factor activity	2.21E-02
87	GO:0015250: water channel activity	2.47E-02
88	GO:0016788: hydrolase activity, acting on ester bonds	2.98E-02
89	GO:0005096: GTPase activator activity	3.09E-02
90	GO:0016301: kinase activity	3.47E-02
91	GO:0003697: single-stranded DNA binding	3.53E-02
92	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.60E-02
93	GO:0003993: acid phosphatase activity	3.64E-02
94	GO:0004185: serine-type carboxypeptidase activity	4.23E-02
95	GO:0035091: phosphatidylinositol binding	4.47E-02
96	GO:0042803: protein homodimerization activity	4.53E-02
97	GO:0005515: protein binding	4.78E-02
98	GO:0051287: NAD binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	2.03E-15
3	GO:0080085: signal recognition particle, chloroplast targeting	1.77E-06
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.40E-06
5	GO:0009535: chloroplast thylakoid membrane	7.97E-06
6	GO:0031209: SCAR complex	6.61E-05
7	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.95E-04
8	GO:0005773: vacuole	2.35E-04
9	GO:0009570: chloroplast stroma	4.63E-04
10	GO:0009574: preprophase band	5.01E-04
11	GO:0033281: TAT protein transport complex	7.06E-04
12	GO:0005871: kinesin complex	1.30E-03
13	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.34E-03
14	GO:0005623: cell	2.26E-03
15	GO:0009941: chloroplast envelope	4.13E-03
16	GO:0046658: anchored component of plasma membrane	4.70E-03
17	GO:0016604: nuclear body	4.99E-03
18	GO:0005874: microtubule	7.21E-03
19	GO:0005938: cell cortex	7.36E-03
20	GO:0009536: plastid	7.60E-03
21	GO:0030176: integral component of endoplasmic reticulum membrane	8.67E-03
22	GO:0042651: thylakoid membrane	1.08E-02
23	GO:0015629: actin cytoskeleton	1.31E-02
24	GO:0009524: phragmoplast	1.44E-02
25	GO:0005622: intracellular	1.53E-02
26	GO:0009504: cell plate	1.81E-02
27	GO:0009705: plant-type vacuole membrane	1.89E-02
28	GO:0005694: chromosome	1.99E-02
29	GO:0009295: nucleoid	2.27E-02
30	GO:0030529: intracellular ribonucleoprotein complex	2.47E-02
31	GO:0019005: SCF ubiquitin ligase complex	2.98E-02
32	GO:0009707: chloroplast outer membrane	2.98E-02
33	GO:0009579: thylakoid	3.19E-02
34	GO:0005819: spindle	3.76E-02
35	GO:0031977: thylakoid lumen	3.99E-02
36	GO:0005856: cytoskeleton	4.59E-02