co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
5	GO:0046474: glycerophospholipid biosynthetic process	0.00E+00
6	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
7	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
8	GO:0000373: Group II intron splicing	7.56E-05
9	GO:0010582: floral meristem determinacy	1.91E-04
10	GO:0019478: D-amino acid catabolic process	5.80E-04
11	GO:0010080: regulation of floral meristem growth	5.80E-04
12	GO:0043686: co-translational protein modification	5.80E-04
13	GO:0043087: regulation of GTPase activity	5.80E-04
14	GO:0034757: negative regulation of iron ion transport	5.80E-04
15	GO:0000105: histidine biosynthetic process	7.99E-04
16	GO:0009958: positive gravitropism	1.03E-03
17	GO:0007018: microtubule-based movement	1.13E-03
18	GO:0010271: regulation of chlorophyll catabolic process	1.25E-03
19	GO:0001736: establishment of planar polarity	1.25E-03
20	GO:0009786: regulation of asymmetric cell division	1.25E-03
21	GO:0010024: phytochromobilin biosynthetic process	1.25E-03
22	GO:0048829: root cap development	1.60E-03
23	GO:0071398: cellular response to fatty acid	2.05E-03
24	GO:0030029: actin filament-based process	2.05E-03
25	GO:0045910: negative regulation of DNA recombination	2.05E-03
26	GO:0031022: nuclear migration along microfilament	2.05E-03
27	GO:0080117: secondary growth	2.05E-03
28	GO:0010022: meristem determinacy	2.05E-03
29	GO:2000904: regulation of starch metabolic process	2.98E-03
30	GO:0010371: regulation of gibberellin biosynthetic process	2.98E-03
31	GO:0051513: regulation of monopolar cell growth	2.98E-03
32	GO:0051639: actin filament network formation	2.98E-03
33	GO:0034059: response to anoxia	2.98E-03
34	GO:0010239: chloroplast mRNA processing	2.98E-03
35	GO:0044211: CTP salvage	2.98E-03
36	GO:0009800: cinnamic acid biosynthetic process	2.98E-03
37	GO:1990019: protein storage vacuole organization	2.98E-03
38	GO:0006021: inositol biosynthetic process	4.02E-03
39	GO:0009956: radial pattern formation	4.02E-03
40	GO:0009755: hormone-mediated signaling pathway	4.02E-03
41	GO:0051764: actin crosslink formation	4.02E-03
42	GO:0008295: spermidine biosynthetic process	4.02E-03
43	GO:0044206: UMP salvage	4.02E-03
44	GO:0045487: gibberellin catabolic process	5.16E-03
45	GO:0009904: chloroplast accumulation movement	5.16E-03
46	GO:0031365: N-terminal protein amino acid modification	5.16E-03
47	GO:0016123: xanthophyll biosynthetic process	5.16E-03
48	GO:0010438: cellular response to sulfur starvation	5.16E-03
49	GO:0010158: abaxial cell fate specification	5.16E-03
50	GO:0080110: sporopollenin biosynthetic process	5.16E-03
51	GO:0009696: salicylic acid metabolic process	5.16E-03
52	GO:0071215: cellular response to abscisic acid stimulus	5.51E-03
53	GO:0009686: gibberellin biosynthetic process	5.51E-03
54	GO:0009926: auxin polar transport	5.71E-03
55	GO:0009734: auxin-activated signaling pathway	5.88E-03
56	GO:0042546: cell wall biogenesis	6.00E-03
57	GO:0010358: leaf shaping	6.40E-03
58	GO:0016554: cytidine to uridine editing	6.40E-03
59	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	6.40E-03
60	GO:0006655: phosphatidylglycerol biosynthetic process	6.40E-03
61	GO:0006559: L-phenylalanine catabolic process	6.40E-03
62	GO:0006206: pyrimidine nucleobase metabolic process	6.40E-03
63	GO:1902456: regulation of stomatal opening	6.40E-03
64	GO:0048831: regulation of shoot system development	6.40E-03
65	GO:0003006: developmental process involved in reproduction	6.40E-03
66	GO:0009451: RNA modification	6.87E-03
67	GO:0010087: phloem or xylem histogenesis	7.03E-03
68	GO:0010305: leaf vascular tissue pattern formation	7.59E-03
69	GO:0009741: response to brassinosteroid	7.59E-03
70	GO:0031930: mitochondria-nucleus signaling pathway	7.73E-03
71	GO:0048509: regulation of meristem development	7.73E-03
72	GO:0009903: chloroplast avoidance movement	7.73E-03
73	GO:0030488: tRNA methylation	7.73E-03
74	GO:0010019: chloroplast-nucleus signaling pathway	7.73E-03
75	GO:0009648: photoperiodism	7.73E-03
76	GO:0016310: phosphorylation	8.11E-03
77	GO:0000082: G1/S transition of mitotic cell cycle	9.15E-03
78	GO:0010444: guard mother cell differentiation	9.15E-03
79	GO:0009610: response to symbiotic fungus	9.15E-03
80	GO:0006955: immune response	9.15E-03
81	GO:0010050: vegetative phase change	9.15E-03
82	GO:0010098: suspensor development	9.15E-03
83	GO:0032502: developmental process	1.00E-02
84	GO:0010583: response to cyclopentenone	1.00E-02
85	GO:0009850: auxin metabolic process	1.07E-02
86	GO:0009690: cytokinin metabolic process	1.07E-02
87	GO:2000070: regulation of response to water deprivation	1.07E-02
88	GO:0009819: drought recovery	1.07E-02
89	GO:0010439: regulation of glucosinolate biosynthetic process	1.07E-02
90	GO:0046620: regulation of organ growth	1.07E-02
91	GO:0048316: seed development	1.08E-02
92	GO:0009639: response to red or far red light	1.14E-02
93	GO:0032544: plastid translation	1.23E-02
94	GO:0071482: cellular response to light stimulus	1.23E-02
95	GO:0007186: G-protein coupled receptor signaling pathway	1.23E-02
96	GO:0010497: plasmodesmata-mediated intercellular transport	1.23E-02
97	GO:0009657: plastid organization	1.23E-02
98	GO:0046916: cellular transition metal ion homeostasis	1.39E-02
99	GO:0009056: catabolic process	1.39E-02
100	GO:0006098: pentose-phosphate shunt	1.39E-02
101	GO:0048507: meristem development	1.39E-02
102	GO:0016573: histone acetylation	1.57E-02
103	GO:0010018: far-red light signaling pathway	1.57E-02
104	GO:1900865: chloroplast RNA modification	1.57E-02
105	GO:0016571: histone methylation	1.57E-02
106	GO:0009793: embryo development ending in seed dormancy	1.60E-02
107	GO:0010411: xyloglucan metabolic process	1.61E-02
108	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.75E-02
109	GO:0006535: cysteine biosynthetic process from serine	1.75E-02
110	GO:0009641: shade avoidance	1.75E-02
111	GO:0006298: mismatch repair	1.75E-02
112	GO:0016441: posttranscriptional gene silencing	1.75E-02
113	GO:0010311: lateral root formation	1.88E-02
114	GO:0000160: phosphorelay signal transduction system	1.88E-02
115	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.88E-02
116	GO:0009750: response to fructose	1.94E-02
117	GO:0048765: root hair cell differentiation	1.94E-02
118	GO:0009682: induced systemic resistance	1.94E-02
119	GO:0007568: aging	2.07E-02
120	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.14E-02
121	GO:0006790: sulfur compound metabolic process	2.14E-02
122	GO:0045037: protein import into chloroplast stroma	2.14E-02
123	GO:0006865: amino acid transport	2.17E-02
124	GO:0009867: jasmonic acid mediated signaling pathway	2.27E-02
125	GO:0009691: cytokinin biosynthetic process	2.34E-02
126	GO:0006094: gluconeogenesis	2.34E-02
127	GO:0010588: cotyledon vascular tissue pattern formation	2.34E-02
128	GO:0010102: lateral root morphogenesis	2.34E-02
129	GO:0045892: negative regulation of transcription, DNA-templated	2.39E-02
130	GO:0040008: regulation of growth	2.48E-02
131	GO:0010540: basipetal auxin transport	2.56E-02
132	GO:0009266: response to temperature stimulus	2.56E-02
133	GO:0006302: double-strand break repair	2.56E-02
134	GO:0048467: gynoecium development	2.56E-02
135	GO:0010020: chloroplast fission	2.56E-02
136	GO:0009933: meristem structural organization	2.56E-02
137	GO:0010207: photosystem II assembly	2.56E-02
138	GO:0006631: fatty acid metabolic process	2.70E-02
139	GO:0046854: phosphatidylinositol phosphorylation	2.77E-02
140	GO:0009825: multidimensional cell growth	2.77E-02
141	GO:0009744: response to sucrose	2.93E-02
142	GO:0000162: tryptophan biosynthetic process	3.00E-02
143	GO:0042753: positive regulation of circadian rhythm	3.00E-02
144	GO:0007166: cell surface receptor signaling pathway	3.11E-02
145	GO:0051017: actin filament bundle assembly	3.23E-02
146	GO:0005992: trehalose biosynthetic process	3.23E-02
147	GO:0019344: cysteine biosynthetic process	3.23E-02
148	GO:0030150: protein import into mitochondrial matrix	3.23E-02
149	GO:0006338: chromatin remodeling	3.23E-02
150	GO:0009636: response to toxic substance	3.29E-02
151	GO:0009965: leaf morphogenesis	3.29E-02
152	GO:0071555: cell wall organization	3.53E-02
153	GO:0003333: amino acid transmembrane transport	3.70E-02
154	GO:0016998: cell wall macromolecule catabolic process	3.70E-02
155	GO:0010431: seed maturation	3.70E-02
156	GO:0051321: meiotic cell cycle	3.70E-02
157	GO:0009736: cytokinin-activated signaling pathway	3.94E-02
158	GO:0016226: iron-sulfur cluster assembly	3.95E-02
159	GO:0035428: hexose transmembrane transport	3.95E-02
160	GO:0009294: DNA mediated transformation	4.20E-02
161	GO:0009625: response to insect	4.20E-02
162	GO:0009693: ethylene biosynthetic process	4.20E-02
163	GO:0010082: regulation of root meristem growth	4.20E-02
164	GO:0006468: protein phosphorylation	4.23E-02
165	GO:0009733: response to auxin	4.35E-02
166	GO:0009909: regulation of flower development	4.36E-02
167	GO:0042127: regulation of cell proliferation	4.46E-02
168	GO:0010584: pollen exine formation	4.46E-02
169	GO:0006284: base-excision repair	4.46E-02
170	GO:0009658: chloroplast organization	4.51E-02
171	GO:0016117: carotenoid biosynthetic process	4.72E-02
172	GO:0070417: cellular response to cold	4.72E-02
173	GO:0080022: primary root development	4.98E-02
174	GO:0008033: tRNA processing	4.98E-02
175	GO:0010501: RNA secondary structure unwinding	4.98E-02
176	GO:0010118: stomatal movement	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
5	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
6	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
7	GO:0071633: dihydroceramidase activity	0.00E+00
8	GO:0004401: histidinol-phosphatase activity	0.00E+00
9	GO:0001872: (1->3)-beta-D-glucan binding	1.03E-04
10	GO:0016301: kinase activity	2.83E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.80E-04
12	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.80E-04
13	GO:0010012: steroid 22-alpha hydroxylase activity	5.80E-04
14	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	5.80E-04
15	GO:0005227: calcium activated cation channel activity	5.80E-04
16	GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity	5.80E-04
17	GO:0042834: peptidoglycan binding	5.80E-04
18	GO:0017169: CDP-alcohol phosphatidyltransferase activity	5.80E-04
19	GO:0042586: peptide deformylase activity	5.80E-04
20	GO:0052381: tRNA dimethylallyltransferase activity	5.80E-04
21	GO:0004519: endonuclease activity	1.04E-03
22	GO:0009884: cytokinin receptor activity	1.25E-03
23	GO:0050017: L-3-cyanoalanine synthase activity	1.25E-03
24	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.25E-03
25	GO:0010296: prenylcysteine methylesterase activity	1.25E-03
26	GO:0004047: aminomethyltransferase activity	1.25E-03
27	GO:0004766: spermidine synthase activity	1.25E-03
28	GO:0052832: inositol monophosphate 3-phosphatase activity	1.25E-03
29	GO:0008805: carbon-monoxide oxygenase activity	1.25E-03
30	GO:0008934: inositol monophosphate 1-phosphatase activity	1.25E-03
31	GO:0052833: inositol monophosphate 4-phosphatase activity	1.25E-03
32	GO:0050736: O-malonyltransferase activity	1.25E-03
33	GO:0005034: osmosensor activity	2.05E-03
34	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.05E-03
35	GO:0045548: phenylalanine ammonia-lyase activity	2.05E-03
36	GO:0080031: methyl salicylate esterase activity	2.98E-03
37	GO:0004300: enoyl-CoA hydratase activity	2.98E-03
38	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.98E-03
39	GO:0005096: GTPase activator activity	3.24E-03
40	GO:0004845: uracil phosphoribosyltransferase activity	4.02E-03
41	GO:0010011: auxin binding	4.02E-03
42	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.02E-03
43	GO:0010328: auxin influx transmembrane transporter activity	4.02E-03
44	GO:0019199: transmembrane receptor protein kinase activity	4.02E-03
45	GO:0005471: ATP:ADP antiporter activity	5.16E-03
46	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.16E-03
47	GO:0008725: DNA-3-methyladenine glycosylase activity	5.16E-03
48	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.59E-03
49	GO:0030983: mismatched DNA binding	6.40E-03
50	GO:0080030: methyl indole-3-acetate esterase activity	6.40E-03
51	GO:0004332: fructose-bisphosphate aldolase activity	6.40E-03
52	GO:0004709: MAP kinase kinase kinase activity	6.40E-03
53	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	7.59E-03
54	GO:0019900: kinase binding	7.73E-03
55	GO:0004124: cysteine synthase activity	7.73E-03
56	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	7.73E-03
57	GO:0016832: aldehyde-lyase activity	7.73E-03
58	GO:0051753: mannan synthase activity	7.73E-03
59	GO:0004849: uridine kinase activity	7.73E-03
60	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.39E-03
61	GO:0003777: microtubule motor activity	9.53E-03
62	GO:0003924: GTPase activity	1.00E-02
63	GO:0004518: nuclease activity	1.00E-02
64	GO:0005200: structural constituent of cytoskeleton	1.21E-02
65	GO:0003724: RNA helicase activity	1.23E-02
66	GO:0046914: transition metal ion binding	1.23E-02
67	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.39E-02
68	GO:0030247: polysaccharide binding	1.61E-02
69	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.61E-02
70	GO:0004673: protein histidine kinase activity	1.75E-02
71	GO:0004805: trehalose-phosphatase activity	1.75E-02
72	GO:0030145: manganese ion binding	2.07E-02
73	GO:0003723: RNA binding	2.32E-02
74	GO:0000155: phosphorelay sensor kinase activity	2.34E-02
75	GO:0015266: protein channel activity	2.34E-02
76	GO:0005525: GTP binding	2.40E-02
77	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.41E-02
78	GO:0004674: protein serine/threonine kinase activity	2.43E-02
79	GO:0042803: protein homodimerization activity	2.50E-02
80	GO:0004871: signal transducer activity	2.50E-02
81	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.56E-02
82	GO:0003712: transcription cofactor activity	2.77E-02
83	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.00E-02
84	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.00E-02
85	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.00E-02
86	GO:0043621: protein self-association	3.17E-02
87	GO:0051536: iron-sulfur cluster binding	3.23E-02
88	GO:0031418: L-ascorbic acid binding	3.23E-02
89	GO:0008134: transcription factor binding	3.23E-02
90	GO:0051087: chaperone binding	3.46E-02
91	GO:0043424: protein histidine kinase binding	3.46E-02
92	GO:0003964: RNA-directed DNA polymerase activity	3.70E-02
93	GO:0008408: 3'-5' exonuclease activity	3.70E-02
94	GO:0003690: double-stranded DNA binding	4.08E-02
95	GO:0015171: amino acid transmembrane transporter activity	4.36E-02
96	GO:0016788: hydrolase activity, acting on ester bonds	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0000408: EKC/KEOPS complex	0.00E+00
4	GO:0005886: plasma membrane	5.42E-04
5	GO:0000791: euchromatin	5.80E-04
6	GO:0009986: cell surface	6.42E-04
7	GO:0005871: kinesin complex	8.52E-04
8	GO:0030870: Mre11 complex	1.25E-03
9	GO:0009513: etioplast	1.25E-03
10	GO:0009509: chromoplast	2.05E-03
11	GO:0030139: endocytic vesicle	2.05E-03
12	GO:0046658: anchored component of plasma membrane	2.62E-03
13	GO:0032585: multivesicular body membrane	2.98E-03
14	GO:0032432: actin filament bundle	2.98E-03
15	GO:0000795: synaptonemal complex	5.16E-03
16	GO:0031305: integral component of mitochondrial inner membrane	1.07E-02
17	GO:0009501: amyloplast	1.07E-02
18	GO:0031090: organelle membrane	1.39E-02
19	GO:0010494: cytoplasmic stress granule	1.39E-02
20	GO:0009507: chloroplast	1.77E-02
21	GO:0005884: actin filament	1.94E-02
22	GO:0009574: preprophase band	2.34E-02
23	GO:0005578: proteinaceous extracellular matrix	2.34E-02
24	GO:0030095: chloroplast photosystem II	2.56E-02
25	GO:0005875: microtubule associated complex	3.00E-02
26	GO:0009654: photosystem II oxygen evolving complex	3.46E-02
27	GO:0015629: actin cytoskeleton	4.20E-02
28	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.46E-02