co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010203: response to very low fluence red light stimulus	0.00E+00
2	GO:0000372: Group I intron splicing	0.00E+00
3	GO:0033528: S-methylmethionine cycle	0.00E+00
4	GO:1905177: tracheary element differentiation	0.00E+00
5	GO:0006399: tRNA metabolic process	0.00E+00
6	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
7	GO:0070979: protein K11-linked ubiquitination	0.00E+00
8	GO:2000505: regulation of energy homeostasis	0.00E+00
9	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
10	GO:0045038: protein import into chloroplast thylakoid membrane	1.39E-06
11	GO:0010207: photosystem II assembly	2.90E-06
12	GO:0000373: Group II intron splicing	2.21E-05
13	GO:0090351: seedling development	1.07E-04
14	GO:0006400: tRNA modification	2.96E-04
15	GO:0016117: carotenoid biosynthetic process	3.13E-04
16	GO:0048657: anther wall tapetum cell differentiation	3.44E-04
17	GO:0000012: single strand break repair	3.44E-04
18	GO:0043266: regulation of potassium ion transport	3.44E-04
19	GO:0010080: regulation of floral meristem growth	3.44E-04
20	GO:0042547: cell wall modification involved in multidimensional cell growth	3.44E-04
21	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	3.44E-04
22	GO:0043087: regulation of GTPase activity	3.44E-04
23	GO:2000021: regulation of ion homeostasis	3.44E-04
24	GO:0006436: tryptophanyl-tRNA aminoacylation	3.44E-04
25	GO:0000066: mitochondrial ornithine transport	3.44E-04
26	GO:1902458: positive regulation of stomatal opening	3.44E-04
27	GO:0006419: alanyl-tRNA aminoacylation	3.44E-04
28	GO:0015969: guanosine tetraphosphate metabolic process	3.44E-04
29	GO:0045010: actin nucleation	3.72E-04
30	GO:0048564: photosystem I assembly	3.72E-04
31	GO:0071482: cellular response to light stimulus	4.56E-04
32	GO:0009086: methionine biosynthetic process	6.45E-04
33	GO:0006435: threonyl-tRNA aminoacylation	7.51E-04
34	GO:0000256: allantoin catabolic process	7.51E-04
35	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.51E-04
36	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.51E-04
37	GO:0060359: response to ammonium ion	7.51E-04
38	GO:0048255: mRNA stabilization	7.51E-04
39	GO:0009793: embryo development ending in seed dormancy	7.76E-04
40	GO:0009658: chloroplast organization	8.64E-04
41	GO:0006352: DNA-templated transcription, initiation	8.68E-04
42	GO:0010136: ureide catabolic process	1.21E-03
43	GO:0010022: meristem determinacy	1.21E-03
44	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.21E-03
45	GO:0017006: protein-tetrapyrrole linkage	1.21E-03
46	GO:0010623: programmed cell death involved in cell development	1.21E-03
47	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.21E-03
48	GO:0006696: ergosterol biosynthetic process	1.21E-03
49	GO:0043157: response to cation stress	1.21E-03
50	GO:0005977: glycogen metabolic process	1.21E-03
51	GO:0006145: purine nucleobase catabolic process	1.75E-03
52	GO:0042989: sequestering of actin monomers	1.75E-03
53	GO:1901332: negative regulation of lateral root development	1.75E-03
54	GO:2001141: regulation of RNA biosynthetic process	1.75E-03
55	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.75E-03
56	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.75E-03
57	GO:0051639: actin filament network formation	1.75E-03
58	GO:0009584: detection of visible light	1.75E-03
59	GO:0009226: nucleotide-sugar biosynthetic process	1.75E-03
60	GO:0042546: cell wall biogenesis	2.20E-03
61	GO:0006730: one-carbon metabolic process	2.31E-03
62	GO:0010508: positive regulation of autophagy	2.35E-03
63	GO:0071483: cellular response to blue light	2.35E-03
64	GO:0010021: amylopectin biosynthetic process	2.35E-03
65	GO:0051781: positive regulation of cell division	2.35E-03
66	GO:0051764: actin crosslink formation	2.35E-03
67	GO:0048442: sepal development	2.35E-03
68	GO:0051322: anaphase	2.35E-03
69	GO:0006661: phosphatidylinositol biosynthetic process	2.35E-03
70	GO:0006183: GTP biosynthetic process	2.35E-03
71	GO:0009306: protein secretion	2.74E-03
72	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.96E-03
73	GO:0030041: actin filament polymerization	3.00E-03
74	GO:0010236: plastoquinone biosynthetic process	3.00E-03
75	GO:1902183: regulation of shoot apical meristem development	3.00E-03
76	GO:0016123: xanthophyll biosynthetic process	3.00E-03
77	GO:0010158: abaxial cell fate specification	3.00E-03
78	GO:0032876: negative regulation of DNA endoreduplication	3.00E-03
79	GO:0010268: brassinosteroid homeostasis	3.45E-03
80	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.71E-03
81	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.71E-03
82	GO:0007059: chromosome segregation	3.71E-03
83	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.71E-03
84	GO:0009959: negative gravitropism	3.71E-03
85	GO:0006555: methionine metabolic process	3.71E-03
86	GO:0016132: brassinosteroid biosynthetic process	4.26E-03
87	GO:0009612: response to mechanical stimulus	4.47E-03
88	GO:0010076: maintenance of floral meristem identity	4.47E-03
89	GO:0017148: negative regulation of translation	4.47E-03
90	GO:0042372: phylloquinone biosynthetic process	4.47E-03
91	GO:0009630: gravitropism	4.55E-03
92	GO:0010090: trichome morphogenesis	4.85E-03
93	GO:0016125: sterol metabolic process	5.17E-03
94	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.27E-03
95	GO:0009645: response to low light intensity stimulus	5.27E-03
96	GO:0051510: regulation of unidimensional cell growth	5.27E-03
97	GO:0010161: red light signaling pathway	5.27E-03
98	GO:0009395: phospholipid catabolic process	5.27E-03
99	GO:0042255: ribosome assembly	6.13E-03
100	GO:0006605: protein targeting	6.13E-03
101	GO:0006353: DNA-templated transcription, termination	6.13E-03
102	GO:0032875: regulation of DNA endoreduplication	6.13E-03
103	GO:2000070: regulation of response to water deprivation	6.13E-03
104	GO:0010492: maintenance of shoot apical meristem identity	6.13E-03
105	GO:0000105: histidine biosynthetic process	6.13E-03
106	GO:0010027: thylakoid membrane organization	6.16E-03
107	GO:0009657: plastid organization	7.03E-03
108	GO:0032544: plastid translation	7.03E-03
109	GO:0022900: electron transport chain	7.03E-03
110	GO:0010411: xyloglucan metabolic process	7.26E-03
111	GO:0010206: photosystem II repair	7.97E-03
112	GO:2000024: regulation of leaf development	7.97E-03
113	GO:0048507: meristem development	7.97E-03
114	GO:0046685: response to arsenic-containing substance	7.97E-03
115	GO:0009821: alkaloid biosynthetic process	7.97E-03
116	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.97E-03
117	GO:0018298: protein-chromophore linkage	8.05E-03
118	GO:0009638: phototropism	8.96E-03
119	GO:0035999: tetrahydrofolate interconversion	8.96E-03
120	GO:0048441: petal development	1.00E-02
121	GO:0006535: cysteine biosynthetic process from serine	1.00E-02
122	GO:0006259: DNA metabolic process	1.00E-02
123	GO:0006415: translational termination	1.11E-02
124	GO:0006265: DNA topological change	1.11E-02
125	GO:0045037: protein import into chloroplast stroma	1.22E-02
126	GO:0010582: floral meristem determinacy	1.22E-02
127	GO:0030036: actin cytoskeleton organization	1.33E-02
128	GO:0006094: gluconeogenesis	1.33E-02
129	GO:0009767: photosynthetic electron transport chain	1.33E-02
130	GO:0006302: double-strand break repair	1.45E-02
131	GO:0048440: carpel development	1.45E-02
132	GO:0042538: hyperosmotic salinity response	1.66E-02
133	GO:0006833: water transport	1.70E-02
134	GO:0005975: carbohydrate metabolic process	1.74E-02
135	GO:0007010: cytoskeleton organization	1.83E-02
136	GO:0051017: actin filament bundle assembly	1.83E-02
137	GO:0006289: nucleotide-excision repair	1.83E-02
138	GO:0019344: cysteine biosynthetic process	1.83E-02
139	GO:0009944: polarity specification of adaxial/abaxial axis	1.83E-02
140	GO:0006825: copper ion transport	1.96E-02
141	GO:0008299: isoprenoid biosynthetic process	1.96E-02
142	GO:0006418: tRNA aminoacylation for protein translation	1.96E-02
143	GO:0015992: proton transport	2.10E-02
144	GO:0010431: seed maturation	2.10E-02
145	GO:0006096: glycolytic process	2.11E-02
146	GO:0080167: response to karrikin	2.21E-02
147	GO:0035428: hexose transmembrane transport	2.24E-02
148	GO:0031348: negative regulation of defense response	2.24E-02
149	GO:0080092: regulation of pollen tube growth	2.24E-02
150	GO:0009814: defense response, incompatible interaction	2.24E-02
151	GO:0071555: cell wall organization	2.30E-02
152	GO:0019722: calcium-mediated signaling	2.53E-02
153	GO:0010089: xylem development	2.53E-02
154	GO:0010584: pollen exine formation	2.53E-02
155	GO:0048443: stamen development	2.53E-02
156	GO:0008033: tRNA processing	2.83E-02
157	GO:0034220: ion transmembrane transport	2.83E-02
158	GO:0010087: phloem or xylem histogenesis	2.83E-02
159	GO:0045489: pectin biosynthetic process	2.99E-02
160	GO:0010154: fruit development	2.99E-02
161	GO:0048868: pollen tube development	2.99E-02
162	GO:0046323: glucose import	2.99E-02
163	GO:0007018: microtubule-based movement	3.15E-02
164	GO:0019252: starch biosynthetic process	3.31E-02
165	GO:0008654: phospholipid biosynthetic process	3.31E-02
166	GO:0006629: lipid metabolic process	3.58E-02
167	GO:0016032: viral process	3.64E-02
168	GO:0032502: developmental process	3.64E-02
169	GO:0007264: small GTPase mediated signal transduction	3.64E-02
170	GO:0010583: response to cyclopentenone	3.64E-02
171	GO:0006397: mRNA processing	3.78E-02
172	GO:0007267: cell-cell signaling	4.15E-02
173	GO:0000910: cytokinesis	4.33E-02
174	GO:0045490: pectin catabolic process	4.38E-02
175	GO:0009911: positive regulation of flower development	4.51E-02
176	GO:0016126: sterol biosynthetic process	4.51E-02
177	GO:0010029: regulation of seed germination	4.69E-02
178	GO:0007166: cell surface receptor signaling pathway	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
3	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
4	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
5	GO:0046905: phytoene synthase activity	0.00E+00
6	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
7	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
8	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
11	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
12	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
13	GO:0001053: plastid sigma factor activity	7.42E-05
14	GO:0016987: sigma factor activity	7.42E-05
15	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	3.44E-04
16	GO:0004813: alanine-tRNA ligase activity	3.44E-04
17	GO:0005290: L-histidine transmembrane transporter activity	3.44E-04
18	GO:0004008: copper-exporting ATPase activity	3.44E-04
19	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	3.44E-04
20	GO:0051996: squalene synthase activity	3.44E-04
21	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	3.44E-04
22	GO:0004830: tryptophan-tRNA ligase activity	3.44E-04
23	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	3.44E-04
24	GO:0031516: far-red light photoreceptor activity	3.44E-04
25	GO:0003879: ATP phosphoribosyltransferase activity	3.44E-04
26	GO:0043022: ribosome binding	3.72E-04
27	GO:0004829: threonine-tRNA ligase activity	7.51E-04
28	GO:0019156: isoamylase activity	7.51E-04
29	GO:0000064: L-ornithine transmembrane transporter activity	7.51E-04
30	GO:0004802: transketolase activity	7.51E-04
31	GO:0048531: beta-1,3-galactosyltransferase activity	7.51E-04
32	GO:0008728: GTP diphosphokinase activity	7.51E-04
33	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.51E-04
34	GO:0050017: L-3-cyanoalanine synthase activity	7.51E-04
35	GO:0010291: carotene beta-ring hydroxylase activity	7.51E-04
36	GO:0009883: red or far-red light photoreceptor activity	7.51E-04
37	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	7.51E-04
38	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.51E-04
39	GO:0003938: IMP dehydrogenase activity	7.51E-04
40	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	7.51E-04
41	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.68E-04
42	GO:0003913: DNA photolyase activity	1.21E-03
43	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.21E-03
44	GO:0008020: G-protein coupled photoreceptor activity	1.21E-03
45	GO:0070402: NADPH binding	1.21E-03
46	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.21E-03
47	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.26E-03
48	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.75E-03
49	GO:0015181: arginine transmembrane transporter activity	1.75E-03
50	GO:0016149: translation release factor activity, codon specific	1.75E-03
51	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.75E-03
52	GO:0015189: L-lysine transmembrane transporter activity	1.75E-03
53	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.35E-03
54	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.35E-03
55	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.35E-03
56	GO:0070628: proteasome binding	2.35E-03
57	GO:0030570: pectate lyase activity	2.52E-03
58	GO:0003785: actin monomer binding	3.00E-03
59	GO:0008374: O-acyltransferase activity	3.00E-03
60	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.36E-03
61	GO:0004556: alpha-amylase activity	3.71E-03
62	GO:0031593: polyubiquitin binding	3.71E-03
63	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.26E-03
64	GO:0048038: quinone binding	4.26E-03
65	GO:0004124: cysteine synthase activity	4.47E-03
66	GO:0004017: adenylate kinase activity	4.47E-03
67	GO:0004518: nuclease activity	4.55E-03
68	GO:0005525: GTP binding	5.18E-03
69	GO:0004427: inorganic diphosphatase activity	5.27E-03
70	GO:0009881: photoreceptor activity	5.27E-03
71	GO:0004672: protein kinase activity	5.81E-03
72	GO:0008312: 7S RNA binding	6.13E-03
73	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	6.61E-03
74	GO:0005375: copper ion transmembrane transporter activity	7.03E-03
75	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	7.03E-03
76	GO:0016798: hydrolase activity, acting on glycosyl bonds	7.26E-03
77	GO:0003747: translation release factor activity	7.97E-03
78	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	8.81E-03
79	GO:0030955: potassium ion binding	8.96E-03
80	GO:0016844: strictosidine synthase activity	8.96E-03
81	GO:0004743: pyruvate kinase activity	8.96E-03
82	GO:0004673: protein histidine kinase activity	1.00E-02
83	GO:0004161: dimethylallyltranstransferase activity	1.11E-02
84	GO:0000049: tRNA binding	1.22E-02
85	GO:0008081: phosphoric diester hydrolase activity	1.33E-02
86	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.33E-02
87	GO:0031072: heat shock protein binding	1.33E-02
88	GO:0000155: phosphorelay sensor kinase activity	1.33E-02
89	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.79E-02
90	GO:0043130: ubiquitin binding	1.83E-02
91	GO:0005528: FK506 binding	1.83E-02
92	GO:0003690: double-stranded DNA binding	1.85E-02
93	GO:0016874: ligase activity	2.40E-02
94	GO:0003727: single-stranded RNA binding	2.53E-02
95	GO:0004812: aminoacyl-tRNA ligase activity	2.68E-02
96	GO:0004871: signal transducer activity	2.93E-02
97	GO:0004527: exonuclease activity	2.99E-02
98	GO:0008536: Ran GTPase binding	2.99E-02
99	GO:0010181: FMN binding	3.15E-02
100	GO:0016853: isomerase activity	3.15E-02
101	GO:0005355: glucose transmembrane transporter activity	3.15E-02
102	GO:0019901: protein kinase binding	3.31E-02
103	GO:0016829: lyase activity	3.45E-02
104	GO:0003924: GTPase activity	3.58E-02
105	GO:0046872: metal ion binding	3.77E-02
106	GO:0051015: actin filament binding	3.81E-02
107	GO:0015144: carbohydrate transmembrane transporter activity	3.81E-02
108	GO:0003684: damaged DNA binding	3.98E-02
109	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.15E-02
110	GO:0003723: RNA binding	4.29E-02
111	GO:0005351: sugar:proton symporter activity	4.29E-02
112	GO:0016597: amino acid binding	4.33E-02
113	GO:0015250: water channel activity	4.51E-02
114	GO:0008017: microtubule binding	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	5.32E-23
3	GO:0009570: chloroplast stroma	2.96E-08
4	GO:0009535: chloroplast thylakoid membrane	7.58E-08
5	GO:0080085: signal recognition particle, chloroplast targeting	5.37E-06
6	GO:0031209: SCAR complex	1.68E-04
7	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.56E-04
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.47E-04
9	GO:0016604: nuclear body	6.45E-04
10	GO:0046658: anchored component of plasma membrane	6.57E-04
11	GO:0009579: thylakoid	7.96E-04
12	GO:0030529: intracellular ribonucleoprotein complex	8.08E-04
13	GO:0009574: preprophase band	1.12E-03
14	GO:0033281: TAT protein transport complex	1.21E-03
15	GO:0031225: anchored component of membrane	1.42E-03
16	GO:0032432: actin filament bundle	1.75E-03
17	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.35E-03
18	GO:0005773: vacuole	3.17E-03
19	GO:0009505: plant-type cell wall	4.12E-03
20	GO:0031969: chloroplast membrane	5.38E-03
21	GO:0009543: chloroplast thylakoid lumen	6.39E-03
22	GO:0005680: anaphase-promoting complex	7.97E-03
23	GO:0016324: apical plasma membrane	1.00E-02
24	GO:0005884: actin filament	1.11E-02
25	GO:0009536: plastid	1.16E-02
26	GO:0031977: thylakoid lumen	1.22E-02
27	GO:0000311: plastid large ribosomal subunit	1.22E-02
28	GO:0009941: chloroplast envelope	1.29E-02
29	GO:0005938: cell cortex	1.33E-02
30	GO:0005578: proteinaceous extracellular matrix	1.33E-02
31	GO:0005856: cytoskeleton	1.49E-02
32	GO:0030176: integral component of endoplasmic reticulum membrane	1.58E-02
33	GO:0042651: thylakoid membrane	1.96E-02
34	GO:0009654: photosystem II oxygen evolving complex	1.96E-02
35	GO:0009532: plastid stroma	2.10E-02
36	GO:0015629: actin cytoskeleton	2.38E-02
37	GO:0005871: kinesin complex	2.68E-02
38	GO:0010287: plastoglobule	3.02E-02
39	GO:0005623: cell	3.27E-02
40	GO:0019898: extrinsic component of membrane	3.31E-02
41	GO:0009506: plasmodesma	3.96E-02
42	GO:0009295: nucleoid	4.15E-02