co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0006664: glycolipid metabolic process	0.00E+00
4	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
5	GO:0009733: response to auxin	2.61E-06
6	GO:0046620: regulation of organ growth	1.09E-05
7	GO:0009734: auxin-activated signaling pathway	3.05E-04
8	GO:0034757: negative regulation of iron ion transport	3.42E-04
9	GO:0040008: regulation of growth	3.55E-04
10	GO:1900865: chloroplast RNA modification	6.39E-04
11	GO:1900871: chloroplast mRNA modification	7.45E-04
12	GO:0010271: regulation of chlorophyll catabolic process	7.45E-04
13	GO:0010582: floral meristem determinacy	9.79E-04
14	GO:0080117: secondary growth	1.21E-03
15	GO:0071398: cellular response to fatty acid	1.21E-03
16	GO:0030029: actin filament-based process	1.21E-03
17	GO:0090506: axillary shoot meristem initiation	1.21E-03
18	GO:0010371: regulation of gibberellin biosynthetic process	1.74E-03
19	GO:0051513: regulation of monopolar cell growth	1.74E-03
20	GO:0009926: auxin polar transport	2.06E-03
21	GO:0006021: inositol biosynthetic process	2.33E-03
22	GO:0009755: hormone-mediated signaling pathway	2.33E-03
23	GO:0071215: cellular response to abscisic acid stimulus	2.49E-03
24	GO:0009686: gibberellin biosynthetic process	2.49E-03
25	GO:0045487: gibberellin catabolic process	2.98E-03
26	GO:0016131: brassinosteroid metabolic process	2.98E-03
27	GO:0010438: cellular response to sulfur starvation	2.98E-03
28	GO:0010158: abaxial cell fate specification	2.98E-03
29	GO:0010087: phloem or xylem histogenesis	3.17E-03
30	GO:0048831: regulation of shoot system development	3.68E-03
31	GO:0003006: developmental process involved in reproduction	3.68E-03
32	GO:0016554: cytidine to uridine editing	3.68E-03
33	GO:0031930: mitochondria-nucleus signaling pathway	4.43E-03
34	GO:0006694: steroid biosynthetic process	4.43E-03
35	GO:0048509: regulation of meristem development	4.43E-03
36	GO:0009639: response to red or far red light	5.11E-03
37	GO:0010098: suspensor development	5.23E-03
38	GO:0010050: vegetative phase change	5.23E-03
39	GO:0009819: drought recovery	6.08E-03
40	GO:0006402: mRNA catabolic process	6.08E-03
41	GO:0010439: regulation of glucosinolate biosynthetic process	6.08E-03
42	GO:0009850: auxin metabolic process	6.08E-03
43	GO:0009704: de-etiolation	6.08E-03
44	GO:2000070: regulation of response to water deprivation	6.08E-03
45	GO:0000105: histidine biosynthetic process	6.08E-03
46	GO:0009416: response to light stimulus	6.70E-03
47	GO:0032544: plastid translation	6.98E-03
48	GO:0007186: G-protein coupled receptor signaling pathway	6.98E-03
49	GO:0048507: meristem development	7.91E-03
50	GO:0000373: Group II intron splicing	7.91E-03
51	GO:0009056: catabolic process	7.91E-03
52	GO:0009051: pentose-phosphate shunt, oxidative branch	7.91E-03
53	GO:0000160: phosphorelay signal transduction system	8.37E-03
54	GO:0016571: histone methylation	8.89E-03
55	GO:0016573: histone acetylation	8.89E-03
56	GO:0010018: far-red light signaling pathway	8.89E-03
57	GO:0009870: defense response signaling pathway, resistance gene-dependent	9.92E-03
58	GO:0009641: shade avoidance	9.92E-03
59	GO:0010629: negative regulation of gene expression	9.92E-03
60	GO:0009682: induced systemic resistance	1.10E-02
61	GO:0006631: fatty acid metabolic process	1.20E-02
62	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.21E-02
63	GO:0006790: sulfur compound metabolic process	1.21E-02
64	GO:0010102: lateral root morphogenesis	1.32E-02
65	GO:0006006: glucose metabolic process	1.32E-02
66	GO:2000028: regulation of photoperiodism, flowering	1.32E-02
67	GO:0010588: cotyledon vascular tissue pattern formation	1.32E-02
68	GO:0042546: cell wall biogenesis	1.36E-02
69	GO:0010207: photosystem II assembly	1.44E-02
70	GO:0010223: secondary shoot formation	1.44E-02
71	GO:0009887: animal organ morphogenesis	1.44E-02
72	GO:0009266: response to temperature stimulus	1.44E-02
73	GO:0048467: gynoecium development	1.44E-02
74	GO:0009636: response to toxic substance	1.47E-02
75	GO:0046854: phosphatidylinositol phosphorylation	1.56E-02
76	GO:0042753: positive regulation of circadian rhythm	1.69E-02
77	GO:0006863: purine nucleobase transport	1.69E-02
78	GO:0009736: cytokinin-activated signaling pathway	1.77E-02
79	GO:0006338: chromatin remodeling	1.82E-02
80	GO:0080147: root hair cell development	1.82E-02
81	GO:0005992: trehalose biosynthetic process	1.82E-02
82	GO:0016114: terpenoid biosynthetic process	2.08E-02
83	GO:0010431: seed maturation	2.08E-02
84	GO:0016226: iron-sulfur cluster assembly	2.22E-02
85	GO:0010082: regulation of root meristem growth	2.37E-02
86	GO:0001944: vasculature development	2.37E-02
87	GO:0009625: response to insect	2.37E-02
88	GO:0009693: ethylene biosynthetic process	2.37E-02
89	GO:0070417: cellular response to cold	2.66E-02
90	GO:0007275: multicellular organism development	2.78E-02
91	GO:0080022: primary root development	2.81E-02
92	GO:0010305: leaf vascular tissue pattern formation	2.96E-02
93	GO:0010182: sugar mediated signaling pathway	2.96E-02
94	GO:0009741: response to brassinosteroid	2.96E-02
95	GO:0010268: brassinosteroid homeostasis	2.96E-02
96	GO:0071554: cell wall organization or biogenesis	3.44E-02
97	GO:0010583: response to cyclopentenone	3.61E-02
98	GO:0019761: glucosinolate biosynthetic process	3.61E-02
99	GO:0032502: developmental process	3.61E-02
100	GO:1901657: glycosyl compound metabolic process	3.78E-02
101	GO:0006464: cellular protein modification process	3.95E-02
102	GO:0010029: regulation of seed germination	4.65E-02
103	GO:0009739: response to gibberellin	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0008395: steroid hydroxylase activity	3.42E-04
4	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.42E-04
5	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.42E-04
6	GO:0005227: calcium activated cation channel activity	3.42E-04
7	GO:0052833: inositol monophosphate 4-phosphatase activity	7.45E-04
8	GO:0050736: O-malonyltransferase activity	7.45E-04
9	GO:0009884: cytokinin receptor activity	7.45E-04
10	GO:0017118: lipoyltransferase activity	7.45E-04
11	GO:0045543: gibberellin 2-beta-dioxygenase activity	7.45E-04
12	GO:0010296: prenylcysteine methylesterase activity	7.45E-04
13	GO:0004047: aminomethyltransferase activity	7.45E-04
14	GO:0052832: inositol monophosphate 3-phosphatase activity	7.45E-04
15	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.45E-04
16	GO:0008805: carbon-monoxide oxygenase activity	7.45E-04
17	GO:0008934: inositol monophosphate 1-phosphatase activity	7.45E-04
18	GO:0005034: osmosensor activity	1.21E-03
19	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.21E-03
20	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.74E-03
21	GO:0004871: signal transducer activity	1.84E-03
22	GO:0005345: purine nucleobase transmembrane transporter activity	1.90E-03
23	GO:0046527: glucosyltransferase activity	2.33E-03
24	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.33E-03
25	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.93E-03
26	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.98E-03
27	GO:0004523: RNA-DNA hybrid ribonuclease activity	2.98E-03
28	GO:0000293: ferric-chelate reductase activity	3.68E-03
29	GO:0004709: MAP kinase kinase kinase activity	3.68E-03
30	GO:0019900: kinase binding	4.43E-03
31	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.43E-03
32	GO:0016832: aldehyde-lyase activity	4.43E-03
33	GO:0004518: nuclease activity	4.50E-03
34	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.91E-03
35	GO:0004673: protein histidine kinase activity	9.92E-03
36	GO:0004805: trehalose-phosphatase activity	9.92E-03
37	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.11E-02
38	GO:0000155: phosphorelay sensor kinase activity	1.32E-02
39	GO:0009982: pseudouridine synthase activity	1.32E-02
40	GO:0003712: transcription cofactor activity	1.56E-02
41	GO:0008134: transcription factor binding	1.82E-02
42	GO:0031418: L-ascorbic acid binding	1.82E-02
43	GO:0043424: protein histidine kinase binding	1.95E-02
44	GO:0033612: receptor serine/threonine kinase binding	2.08E-02
45	GO:0003964: RNA-directed DNA polymerase activity	2.08E-02
46	GO:0010333: terpene synthase activity	2.08E-02
47	GO:0016874: ligase activity	2.37E-02
48	GO:0005199: structural constituent of cell wall	2.96E-02
49	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.96E-02
50	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.24E-02
51	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.44E-02
52	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.58E-02
53	GO:0000156: phosphorelay response regulator activity	3.78E-02
54	GO:0016759: cellulose synthase activity	3.95E-02
55	GO:0005200: structural constituent of cytoskeleton	4.12E-02
56	GO:0016413: O-acetyltransferase activity	4.30E-02
57	GO:0051213: dioxygenase activity	4.47E-02
58	GO:0003677: DNA binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0010494: cytoplasmic stress granule	7.91E-03
2	GO:0009707: chloroplast outer membrane	7.97E-03
3	GO:0030095: chloroplast photosystem II	1.44E-02
4	GO:0005875: microtubule associated complex	1.69E-02
5	GO:0009654: photosystem II oxygen evolving complex	1.95E-02
6	GO:0009532: plastid stroma	2.08E-02
7	GO:0005634: nucleus	2.69E-02
8	GO:0009504: cell plate	3.28E-02
9	GO:0019898: extrinsic component of membrane	3.28E-02
10	GO:0030529: intracellular ribonucleoprotein complex	4.47E-02
11	GO:0000932: P-body	4.47E-02