co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G56780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0042352: GDP-L-fucose salvage	0.00E+00
3	GO:0005980: glycogen catabolic process	3.90E-05
4	GO:0030198: extracellular matrix organization	3.90E-05
5	GO:0043686: co-translational protein modification	3.90E-05
6	GO:0043007: maintenance of rDNA	3.90E-05
7	GO:0000023: maltose metabolic process	3.90E-05
8	GO:0009629: response to gravity	9.72E-05
9	GO:0007154: cell communication	9.72E-05
10	GO:0071497: cellular response to freezing	9.72E-05
11	GO:0042325: regulation of phosphorylation	9.72E-05
12	GO:0016050: vesicle organization	1.68E-04
13	GO:0010601: positive regulation of auxin biosynthetic process	2.48E-04
14	GO:1902347: response to strigolactone	3.33E-04
15	GO:1901141: regulation of lignin biosynthetic process	3.33E-04
16	GO:0010027: thylakoid membrane organization	3.37E-04
17	GO:0031365: N-terminal protein amino acid modification	4.25E-04
18	GO:0009107: lipoate biosynthetic process	4.25E-04
19	GO:0009959: negative gravitropism	5.22E-04
20	GO:0048437: floral organ development	7.28E-04
21	GO:0010161: red light signaling pathway	7.28E-04
22	GO:0010100: negative regulation of photomorphogenesis	9.50E-04
23	GO:0010099: regulation of photomorphogenesis	9.50E-04
24	GO:0010206: photosystem II repair	1.07E-03
25	GO:0006783: heme biosynthetic process	1.07E-03
26	GO:1900865: chloroplast RNA modification	1.19E-03
27	GO:0016441: posttranscriptional gene silencing	1.31E-03
28	GO:0019684: photosynthesis, light reaction	1.44E-03
29	GO:0005983: starch catabolic process	1.58E-03
30	GO:0006820: anion transport	1.58E-03
31	GO:0010102: lateral root morphogenesis	1.72E-03
32	GO:0009266: response to temperature stimulus	1.86E-03
33	GO:0080188: RNA-directed DNA methylation	2.01E-03
34	GO:0090351: seedling development	2.01E-03
35	GO:0010187: negative regulation of seed germination	2.32E-03
36	GO:0048278: vesicle docking	2.64E-03
37	GO:0009686: gibberellin biosynthetic process	2.97E-03
38	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.97E-03
39	GO:0009960: endosperm development	3.69E-03
40	GO:0048544: recognition of pollen	3.87E-03
41	GO:0061025: membrane fusion	3.87E-03
42	GO:0009556: microsporogenesis	4.06E-03
43	GO:0071554: cell wall organization or biogenesis	4.26E-03
44	GO:1901657: glycosyl compound metabolic process	4.65E-03
45	GO:0009828: plant-type cell wall loosening	4.85E-03
46	GO:0010029: regulation of seed germination	5.69E-03
47	GO:0006906: vesicle fusion	5.91E-03
48	GO:0016042: lipid catabolic process	6.05E-03
49	GO:0015995: chlorophyll biosynthetic process	6.13E-03
50	GO:0009631: cold acclimation	7.27E-03
51	GO:0006887: exocytosis	8.74E-03
52	GO:0006897: endocytosis	8.74E-03
53	GO:0009664: plant-type cell wall organization	1.09E-02
54	GO:0009740: gibberellic acid mediated signaling pathway	1.40E-02
55	GO:0009553: embryo sac development	1.43E-02
56	GO:0009624: response to nematode	1.46E-02
57	GO:0009742: brassinosteroid mediated signaling pathway	1.52E-02
58	GO:0006633: fatty acid biosynthetic process	2.02E-02
59	GO:0006413: translational initiation	2.05E-02
60	GO:0007623: circadian rhythm	2.16E-02
61	GO:0008380: RNA splicing	2.45E-02
62	GO:0009826: unidimensional cell growth	2.86E-02
63	GO:0005975: carbohydrate metabolic process	3.41E-02
64	GO:0044550: secondary metabolite biosynthetic process	3.64E-02
65	GO:0015979: photosynthesis	3.77E-02
66	GO:0006886: intracellular protein transport	3.99E-02
67	GO:0006281: DNA repair	4.53E-02
68	GO:0007165: signal transduction	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0050201: fucokinase activity	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
4	GO:0005363: maltose transmembrane transporter activity	0.00E+00
5	GO:0042586: peptide deformylase activity	3.90E-05
6	GO:0010313: phytochrome binding	3.90E-05
7	GO:0004645: phosphorylase activity	3.90E-05
8	GO:0008184: glycogen phosphorylase activity	3.90E-05
9	GO:0030385: ferredoxin:thioredoxin reductase activity	9.72E-05
10	GO:0016992: lipoate synthase activity	1.68E-04
11	GO:0004335: galactokinase activity	3.33E-04
12	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	5.22E-04
13	GO:0004629: phospholipase C activity	5.22E-04
14	GO:0004435: phosphatidylinositol phospholipase C activity	6.22E-04
15	GO:0071949: FAD binding	1.07E-03
16	GO:0019888: protein phosphatase regulator activity	1.72E-03
17	GO:0001085: RNA polymerase II transcription factor binding	3.69E-03
18	GO:0016413: O-acetyltransferase activity	5.26E-03
19	GO:0102483: scopolin beta-glucosidase activity	6.13E-03
20	GO:0008236: serine-type peptidase activity	6.35E-03
21	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	7.27E-03
22	GO:0008422: beta-glucosidase activity	8.24E-03
23	GO:0000149: SNARE binding	8.24E-03
24	GO:0042393: histone binding	8.48E-03
25	GO:0051539: 4 iron, 4 sulfur cluster binding	8.48E-03
26	GO:0005484: SNAP receptor activity	9.25E-03
27	GO:0016298: lipase activity	1.17E-02
28	GO:0004386: helicase activity	1.56E-02
29	GO:0030170: pyridoxal phosphate binding	1.85E-02
30	GO:0004252: serine-type endopeptidase activity	1.85E-02
31	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.88E-02
32	GO:0003743: translation initiation factor activity	2.41E-02
33	GO:0042802: identical protein binding	2.56E-02
34	GO:0008168: methyltransferase activity	2.86E-02
35	GO:0003682: chromatin binding	3.06E-02
36	GO:0008233: peptidase activity	3.39E-02
37	GO:0004497: monooxygenase activity	3.43E-02
38	GO:0004871: signal transducer activity	4.03E-02
39	GO:0004519: endonuclease activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009706: chloroplast inner membrane	9.97E-05
2	GO:0009507: chloroplast	1.90E-04
3	GO:0005655: nucleolar ribonuclease P complex	6.22E-04
4	GO:0000159: protein phosphatase type 2A complex	1.44E-03
5	GO:0009508: plastid chromosome	1.72E-03
6	GO:0009534: chloroplast thylakoid	2.12E-03
7	GO:0009570: chloroplast stroma	3.16E-03
8	GO:0009295: nucleoid	5.05E-03
9	GO:0005667: transcription factor complex	5.91E-03
10	GO:0031977: thylakoid lumen	8.74E-03
11	GO:0031201: SNARE complex	8.74E-03
12	GO:0012505: endomembrane system	1.43E-02
13	GO:0009543: chloroplast thylakoid lumen	1.72E-02
14	GO:0046658: anchored component of plasma membrane	2.63E-02
15	GO:0009941: chloroplast envelope	2.88E-02
16	GO:0043231: intracellular membrane-bounded organelle	4.85E-02