co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G56350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
2	GO:1990022: RNA polymerase III complex localization to nucleus	7.58E-05
3	GO:0044376: RNA polymerase II complex import to nucleus	7.58E-05
4	GO:1903648: positive regulation of chlorophyll catabolic process	7.58E-05
5	GO:0000077: DNA damage checkpoint	7.58E-05
6	GO:1990641: response to iron ion starvation	7.58E-05
7	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	7.58E-05
8	GO:0007275: multicellular organism development	7.81E-05
9	GO:0052542: defense response by callose deposition	1.81E-04
10	GO:0006101: citrate metabolic process	1.81E-04
11	GO:0042853: L-alanine catabolic process	1.81E-04
12	GO:0040020: regulation of meiotic nuclear division	1.81E-04
13	GO:0009812: flavonoid metabolic process	1.81E-04
14	GO:1901562: response to paraquat	3.05E-04
15	GO:0006517: protein deglycosylation	3.05E-04
16	GO:0071323: cellular response to chitin	4.41E-04
17	GO:0055070: copper ion homeostasis	4.41E-04
18	GO:0055089: fatty acid homeostasis	4.41E-04
19	GO:0051639: actin filament network formation	4.41E-04
20	GO:0000003: reproduction	5.87E-04
21	GO:0051764: actin crosslink formation	5.87E-04
22	GO:0006097: glyoxylate cycle	7.44E-04
23	GO:2000014: regulation of endosperm development	1.26E-03
24	GO:1900057: positive regulation of leaf senescence	1.26E-03
25	GO:0010044: response to aluminum ion	1.26E-03
26	GO:0006491: N-glycan processing	1.46E-03
27	GO:0006102: isocitrate metabolic process	1.46E-03
28	GO:0007155: cell adhesion	1.46E-03
29	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	1.66E-03
30	GO:0010332: response to gamma radiation	1.87E-03
31	GO:0009086: methionine biosynthetic process	2.09E-03
32	GO:0006896: Golgi to vacuole transport	2.32E-03
33	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.32E-03
34	GO:0016441: posttranscriptional gene silencing	2.32E-03
35	GO:0052544: defense response by callose deposition in cell wall	2.56E-03
36	GO:0006913: nucleocytoplasmic transport	2.56E-03
37	GO:0045037: protein import into chloroplast stroma	2.80E-03
38	GO:0000266: mitochondrial fission	2.80E-03
39	GO:0030036: actin cytoskeleton organization	3.06E-03
40	GO:0034605: cellular response to heat	3.32E-03
41	GO:0009901: anther dehiscence	3.59E-03
42	GO:0070588: calcium ion transmembrane transport	3.59E-03
43	GO:0034976: response to endoplasmic reticulum stress	3.86E-03
44	GO:0006636: unsaturated fatty acid biosynthetic process	3.86E-03
45	GO:0009863: salicylic acid mediated signaling pathway	4.15E-03
46	GO:0030150: protein import into mitochondrial matrix	4.15E-03
47	GO:0051017: actin filament bundle assembly	4.15E-03
48	GO:0009738: abscisic acid-activated signaling pathway	4.80E-03
49	GO:0006351: transcription, DNA-templated	4.99E-03
50	GO:0009555: pollen development	5.00E-03
51	GO:0009411: response to UV	5.34E-03
52	GO:0045893: positive regulation of transcription, DNA-templated	5.96E-03
53	GO:0008360: regulation of cell shape	6.64E-03
54	GO:0010197: polar nucleus fusion	6.64E-03
55	GO:0009960: endosperm development	6.64E-03
56	GO:0006457: protein folding	6.94E-03
57	GO:0006891: intra-Golgi vesicle-mediated transport	7.69E-03
58	GO:0016032: viral process	8.05E-03
59	GO:0030163: protein catabolic process	8.42E-03
60	GO:0001666: response to hypoxia	9.95E-03
61	GO:0009816: defense response to bacterium, incompatible interaction	1.03E-02
62	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.03E-02
63	GO:0048767: root hair elongation	1.24E-02
64	GO:0045087: innate immune response	1.42E-02
65	GO:0006099: tricarboxylic acid cycle	1.46E-02
66	GO:0009408: response to heat	1.48E-02
67	GO:0006839: mitochondrial transport	1.55E-02
68	GO:0006631: fatty acid metabolic process	1.60E-02
69	GO:0010114: response to red light	1.70E-02
70	GO:0051707: response to other organism	1.70E-02
71	GO:0000209: protein polyubiquitination	1.75E-02
72	GO:0009965: leaf morphogenesis	1.84E-02
73	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.94E-02
74	GO:0006810: transport	1.99E-02
75	GO:0006812: cation transport	1.99E-02
76	GO:0009846: pollen germination	1.99E-02
77	GO:0042538: hyperosmotic salinity response	1.99E-02
78	GO:0010224: response to UV-B	2.15E-02
79	GO:0006857: oligopeptide transport	2.20E-02
80	GO:0009620: response to fungus	2.53E-02
81	GO:0009058: biosynthetic process	3.28E-02
82	GO:0055085: transmembrane transport	3.34E-02
83	GO:0006355: regulation of transcription, DNA-templated	3.35E-02
84	GO:0009790: embryo development	3.53E-02
85	GO:0006511: ubiquitin-dependent protein catabolic process	3.57E-02
86	GO:0006633: fatty acid biosynthetic process	3.72E-02
87	GO:0010150: leaf senescence	3.98E-02
88	GO:0010228: vegetative to reproductive phase transition of meristem	4.11E-02
89	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.31E-02
90	GO:0006470: protein dephosphorylation	4.37E-02
91	GO:0007166: cell surface receptor signaling pathway	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0061133: endopeptidase activator activity	0.00E+00
2	GO:0016530: metallochaperone activity	0.00E+00
3	GO:0034338: short-chain carboxylesterase activity	0.00E+00
4	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	7.58E-05
5	GO:0047150: betaine-homocysteine S-methyltransferase activity	7.58E-05
6	GO:0003994: aconitate hydratase activity	1.81E-04
7	GO:0000774: adenyl-nucleotide exchange factor activity	1.81E-04
8	GO:0000975: regulatory region DNA binding	3.05E-04
9	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	4.41E-04
10	GO:0070628: proteasome binding	5.87E-04
11	GO:0015368: calcium:cation antiporter activity	5.87E-04
12	GO:0015369: calcium:proton antiporter activity	5.87E-04
13	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	7.44E-04
14	GO:0004623: phospholipase A2 activity	7.44E-04
15	GO:0047714: galactolipase activity	9.07E-04
16	GO:0015491: cation:cation antiporter activity	1.46E-03
17	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	1.66E-03
18	GO:0003843: 1,3-beta-D-glucan synthase activity	1.66E-03
19	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.90E-03
20	GO:0015198: oligopeptide transporter activity	2.80E-03
21	GO:0022857: transmembrane transporter activity	2.86E-03
22	GO:0005388: calcium-transporting ATPase activity	3.06E-03
23	GO:0008061: chitin binding	3.59E-03
24	GO:0043130: ubiquitin binding	4.15E-03
25	GO:0051087: chaperone binding	4.43E-03
26	GO:0004499: N,N-dimethylaniline monooxygenase activity	5.66E-03
27	GO:0005507: copper ion binding	7.83E-03
28	GO:0051015: actin filament binding	8.42E-03
29	GO:0043565: sequence-specific DNA binding	9.52E-03
30	GO:0004806: triglyceride lipase activity	1.12E-02
31	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.12E-02
32	GO:0042803: protein homodimerization activity	1.26E-02
33	GO:0004222: metalloendopeptidase activity	1.28E-02
34	GO:0003924: GTPase activity	1.48E-02
35	GO:0051539: 4 iron, 4 sulfur cluster binding	1.55E-02
36	GO:0050661: NADP binding	1.55E-02
37	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.53E-02
38	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.53E-02
39	GO:0051082: unfolded protein binding	2.69E-02
40	GO:0030170: pyridoxal phosphate binding	3.41E-02
41	GO:0008565: protein transporter activity	3.59E-02
42	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.78E-02
43	GO:0015297: antiporter activity	3.85E-02
44	GO:0008017: microtubule binding	4.11E-02
45	GO:0008194: UDP-glycosyltransferase activity	4.31E-02
46	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0001405: presequence translocase-associated import motor	7.58E-05
2	GO:0008541: proteasome regulatory particle, lid subcomplex	1.01E-04
3	GO:0032432: actin filament bundle	4.41E-04
4	GO:0016272: prefoldin complex	1.08E-03
5	GO:0005774: vacuolar membrane	1.29E-03
6	GO:0000148: 1,3-beta-D-glucan synthase complex	1.66E-03
7	GO:0005884: actin filament	2.56E-03
8	GO:0005795: Golgi stack	3.59E-03
9	GO:0009543: chloroplast thylakoid lumen	3.79E-03
10	GO:0030136: clathrin-coated vesicle	5.98E-03
11	GO:0016592: mediator complex	8.05E-03
12	GO:0005874: microtubule	9.66E-03
13	GO:0005788: endoplasmic reticulum lumen	1.03E-02
14	GO:0000325: plant-type vacuole	1.33E-02
15	GO:0005743: mitochondrial inner membrane	1.38E-02
16	GO:0031902: late endosome membrane	1.60E-02
17	GO:0043231: intracellular membrane-bounded organelle	1.63E-02
18	GO:0000139: Golgi membrane	1.80E-02
19	GO:0000502: proteasome complex	2.10E-02
20	GO:0005834: heterotrimeric G-protein complex	2.47E-02
21	GO:0009706: chloroplast inner membrane	2.69E-02
22	GO:0005829: cytosol	2.96E-02
23	GO:0009524: phragmoplast	3.28E-02
24	GO:0005759: mitochondrial matrix	3.72E-02
25	GO:0009705: plant-type vacuole membrane	3.98E-02
26	GO:0005737: cytoplasm	4.57E-02
27	GO:0005622: intracellular	4.65E-02