GO Enrichment Analysis of Co-expressed Genes with
AT5G55860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000068: regulation of defense response to insect | 0.00E+00 |
| 2 | GO:0006654: phosphatidic acid biosynthetic process | 0.00E+00 |
| 3 | GO:0052386: cell wall thickening | 0.00E+00 |
| 4 | GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress | 0.00E+00 |
| 5 | GO:0009759: indole glucosinolate biosynthetic process | 4.59E-05 |
| 6 | GO:1990641: response to iron ion starvation | 1.54E-04 |
| 7 | GO:0019567: arabinose biosynthetic process | 1.54E-04 |
| 8 | GO:0019478: D-amino acid catabolic process | 1.54E-04 |
| 9 | GO:0051090: regulation of sequence-specific DNA binding transcription factor activity | 1.54E-04 |
| 10 | GO:0006680: glucosylceramide catabolic process | 1.54E-04 |
| 11 | GO:0051607: defense response to virus | 1.65E-04 |
| 12 | GO:0009816: defense response to bacterium, incompatible interaction | 1.94E-04 |
| 13 | GO:0008202: steroid metabolic process | 2.04E-04 |
| 14 | GO:0080151: positive regulation of salicylic acid mediated signaling pathway | 3.51E-04 |
| 15 | GO:0006568: tryptophan metabolic process | 3.51E-04 |
| 16 | GO:0006101: citrate metabolic process | 3.51E-04 |
| 17 | GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine | 3.51E-04 |
| 18 | GO:0006631: fatty acid metabolic process | 4.44E-04 |
| 19 | GO:0051707: response to other organism | 4.92E-04 |
| 20 | GO:0071398: cellular response to fatty acid | 5.75E-04 |
| 21 | GO:0032504: multicellular organism reproduction | 5.75E-04 |
| 22 | GO:0010476: gibberellin mediated signaling pathway | 5.75E-04 |
| 23 | GO:0010325: raffinose family oligosaccharide biosynthetic process | 5.75E-04 |
| 24 | GO:0006556: S-adenosylmethionine biosynthetic process | 5.75E-04 |
| 25 | GO:0080163: regulation of protein serine/threonine phosphatase activity | 5.75E-04 |
| 26 | GO:0071786: endoplasmic reticulum tubular network organization | 8.23E-04 |
| 27 | GO:0080024: indolebutyric acid metabolic process | 8.23E-04 |
| 28 | GO:0055070: copper ion homeostasis | 8.23E-04 |
| 29 | GO:0001676: long-chain fatty acid metabolic process | 8.23E-04 |
| 30 | GO:0070301: cellular response to hydrogen peroxide | 8.23E-04 |
| 31 | GO:0009693: ethylene biosynthetic process | 8.23E-04 |
| 32 | GO:0009963: positive regulation of flavonoid biosynthetic process | 8.23E-04 |
| 33 | GO:0071323: cellular response to chitin | 8.23E-04 |
| 34 | GO:0009620: response to fungus | 9.92E-04 |
| 35 | GO:0009939: positive regulation of gibberellic acid mediated signaling pathway | 1.09E-03 |
| 36 | GO:0048830: adventitious root development | 1.09E-03 |
| 37 | GO:0033356: UDP-L-arabinose metabolic process | 1.09E-03 |
| 38 | GO:0015867: ATP transport | 1.09E-03 |
| 39 | GO:1901002: positive regulation of response to salt stress | 1.09E-03 |
| 40 | GO:0015031: protein transport | 1.24E-03 |
| 41 | GO:0006886: intracellular protein transport | 1.26E-03 |
| 42 | GO:0010193: response to ozone | 1.36E-03 |
| 43 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.36E-03 |
| 44 | GO:0006097: glyoxylate cycle | 1.38E-03 |
| 45 | GO:0015866: ADP transport | 1.70E-03 |
| 46 | GO:0010256: endomembrane system organization | 1.70E-03 |
| 47 | GO:0048444: floral organ morphogenesis | 2.03E-03 |
| 48 | GO:0030643: cellular phosphate ion homeostasis | 2.03E-03 |
| 49 | GO:0040008: regulation of growth | 2.08E-03 |
| 50 | GO:0010044: response to aluminum ion | 2.39E-03 |
| 51 | GO:0071669: plant-type cell wall organization or biogenesis | 2.39E-03 |
| 52 | GO:0009817: defense response to fungus, incompatible interaction | 2.54E-03 |
| 53 | GO:0006102: isocitrate metabolic process | 2.77E-03 |
| 54 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 2.77E-03 |
| 55 | GO:0006605: protein targeting | 2.77E-03 |
| 56 | GO:0007275: multicellular organism development | 2.94E-03 |
| 57 | GO:0042742: defense response to bacterium | 3.04E-03 |
| 58 | GO:0010417: glucuronoxylan biosynthetic process | 3.16E-03 |
| 59 | GO:0006099: tricarboxylic acid cycle | 3.36E-03 |
| 60 | GO:0010112: regulation of systemic acquired resistance | 3.58E-03 |
| 61 | GO:0009056: catabolic process | 3.58E-03 |
| 62 | GO:0009835: fruit ripening | 3.58E-03 |
| 63 | GO:0007338: single fertilization | 3.58E-03 |
| 64 | GO:0042542: response to hydrogen peroxide | 3.97E-03 |
| 65 | GO:0009611: response to wounding | 4.10E-03 |
| 66 | GO:0009641: shade avoidance | 4.46E-03 |
| 67 | GO:0016441: posttranscriptional gene silencing | 4.46E-03 |
| 68 | GO:0009684: indoleacetic acid biosynthetic process | 4.92E-03 |
| 69 | GO:0009682: induced systemic resistance | 4.92E-03 |
| 70 | GO:0052544: defense response by callose deposition in cell wall | 4.92E-03 |
| 71 | GO:0006415: translational termination | 4.92E-03 |
| 72 | GO:0010102: lateral root morphogenesis | 5.91E-03 |
| 73 | GO:0046686: response to cadmium ion | 6.60E-03 |
| 74 | GO:0090351: seedling development | 6.95E-03 |
| 75 | GO:0000162: tryptophan biosynthetic process | 7.49E-03 |
| 76 | GO:0030150: protein import into mitochondrial matrix | 8.05E-03 |
| 77 | GO:0051302: regulation of cell division | 8.63E-03 |
| 78 | GO:0006874: cellular calcium ion homeostasis | 8.63E-03 |
| 79 | GO:0016998: cell wall macromolecule catabolic process | 9.22E-03 |
| 80 | GO:0009269: response to desiccation | 9.22E-03 |
| 81 | GO:0031348: negative regulation of defense response | 9.82E-03 |
| 82 | GO:0030245: cellulose catabolic process | 9.82E-03 |
| 83 | GO:0006730: one-carbon metabolic process | 9.82E-03 |
| 84 | GO:0030433: ubiquitin-dependent ERAD pathway | 9.82E-03 |
| 85 | GO:0009411: response to UV | 1.04E-02 |
| 86 | GO:0010051: xylem and phloem pattern formation | 1.24E-02 |
| 87 | GO:0045489: pectin biosynthetic process | 1.31E-02 |
| 88 | GO:0010150: leaf senescence | 1.37E-02 |
| 89 | GO:0006623: protein targeting to vacuole | 1.44E-02 |
| 90 | GO:0006635: fatty acid beta-oxidation | 1.52E-02 |
| 91 | GO:0071554: cell wall organization or biogenesis | 1.52E-02 |
| 92 | GO:0000302: response to reactive oxygen species | 1.52E-02 |
| 93 | GO:0016032: viral process | 1.59E-02 |
| 94 | GO:0009617: response to bacterium | 1.64E-02 |
| 95 | GO:0071281: cellular response to iron ion | 1.66E-02 |
| 96 | GO:0009567: double fertilization forming a zygote and endosperm | 1.74E-02 |
| 97 | GO:0006464: cellular protein modification process | 1.74E-02 |
| 98 | GO:0009607: response to biotic stimulus | 2.05E-02 |
| 99 | GO:0006906: vesicle fusion | 2.13E-02 |
| 100 | GO:0016311: dephosphorylation | 2.29E-02 |
| 101 | GO:0006457: protein folding | 2.37E-02 |
| 102 | GO:0008219: cell death | 2.38E-02 |
| 103 | GO:0030244: cellulose biosynthetic process | 2.38E-02 |
| 104 | GO:0009832: plant-type cell wall biogenesis | 2.46E-02 |
| 105 | GO:0010043: response to zinc ion | 2.64E-02 |
| 106 | GO:0016192: vesicle-mediated transport | 2.77E-02 |
| 107 | GO:0009867: jasmonic acid mediated signaling pathway | 2.81E-02 |
| 108 | GO:0045087: innate immune response | 2.81E-02 |
| 109 | GO:0016051: carbohydrate biosynthetic process | 2.81E-02 |
| 110 | GO:0006839: mitochondrial transport | 3.09E-02 |
| 111 | GO:0006887: exocytosis | 3.18E-02 |
| 112 | GO:0010114: response to red light | 3.37E-02 |
| 113 | GO:0006869: lipid transport | 3.46E-02 |
| 114 | GO:0009636: response to toxic substance | 3.66E-02 |
| 115 | GO:0009965: leaf morphogenesis | 3.66E-02 |
| 116 | GO:0016042: lipid catabolic process | 3.78E-02 |
| 117 | GO:0009751: response to salicylic acid | 3.83E-02 |
| 118 | GO:0006629: lipid metabolic process | 3.89E-02 |
| 119 | GO:0048364: root development | 4.05E-02 |
| 120 | GO:0009809: lignin biosynthetic process | 4.17E-02 |
| 121 | GO:0009736: cytokinin-activated signaling pathway | 4.17E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051499: D-aminoacyl-tRNA deacylase activity | 0.00E+00 |
| 2 | GO:0034338: short-chain carboxylesterase activity | 0.00E+00 |
| 3 | GO:0055105: ubiquitin-protein transferase inhibitor activity | 0.00E+00 |
| 4 | GO:0102391: decanoate--CoA ligase activity | 6.42E-05 |
| 5 | GO:0008320: protein transmembrane transporter activity | 8.59E-05 |
| 6 | GO:0004467: long-chain fatty acid-CoA ligase activity | 8.59E-05 |
| 7 | GO:0008142: oxysterol binding | 1.39E-04 |
| 8 | GO:0004630: phospholipase D activity | 1.39E-04 |
| 9 | GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity | 1.39E-04 |
| 10 | GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity | 1.54E-04 |
| 11 | GO:0010179: IAA-Ala conjugate hydrolase activity | 1.54E-04 |
| 12 | GO:0004348: glucosylceramidase activity | 1.54E-04 |
| 13 | GO:0010331: gibberellin binding | 3.51E-04 |
| 14 | GO:0003994: aconitate hydratase activity | 3.51E-04 |
| 15 | GO:0000774: adenyl-nucleotide exchange factor activity | 3.51E-04 |
| 16 | GO:0032934: sterol binding | 3.51E-04 |
| 17 | GO:0052691: UDP-arabinopyranose mutase activity | 3.51E-04 |
| 18 | GO:0031418: L-ascorbic acid binding | 5.74E-04 |
| 19 | GO:0004478: methionine adenosyltransferase activity | 5.75E-04 |
| 20 | GO:0035529: NADH pyrophosphatase activity | 8.23E-04 |
| 21 | GO:0016149: translation release factor activity, codon specific | 8.23E-04 |
| 22 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 8.23E-04 |
| 23 | GO:0016866: intramolecular transferase activity | 1.09E-03 |
| 24 | GO:0047631: ADP-ribose diphosphatase activity | 1.38E-03 |
| 25 | GO:0005546: phosphatidylinositol-4,5-bisphosphate binding | 1.38E-03 |
| 26 | GO:0004623: phospholipase A2 activity | 1.38E-03 |
| 27 | GO:0018685: alkane 1-monooxygenase activity | 1.38E-03 |
| 28 | GO:0000210: NAD+ diphosphatase activity | 1.70E-03 |
| 29 | GO:0004656: procollagen-proline 4-dioxygenase activity | 2.03E-03 |
| 30 | GO:0015217: ADP transmembrane transporter activity | 2.03E-03 |
| 31 | GO:0005347: ATP transmembrane transporter activity | 2.03E-03 |
| 32 | GO:0004806: triglyceride lipase activity | 2.30E-03 |
| 33 | GO:0052747: sinapyl alcohol dehydrogenase activity | 2.77E-03 |
| 34 | GO:0005506: iron ion binding | 2.96E-03 |
| 35 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 3.58E-03 |
| 36 | GO:0003747: translation release factor activity | 3.58E-03 |
| 37 | GO:0045309: protein phosphorylated amino acid binding | 4.01E-03 |
| 38 | GO:0004864: protein phosphatase inhibitor activity | 4.46E-03 |
| 39 | GO:0019904: protein domain specific binding | 4.92E-03 |
| 40 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 5.41E-03 |
| 41 | GO:0019825: oxygen binding | 6.77E-03 |
| 42 | GO:0005217: intracellular ligand-gated ion channel activity | 6.95E-03 |
| 43 | GO:0008061: chitin binding | 6.95E-03 |
| 44 | GO:0003712: transcription cofactor activity | 6.95E-03 |
| 45 | GO:0004970: ionotropic glutamate receptor activity | 6.95E-03 |
| 46 | GO:0051087: chaperone binding | 8.63E-03 |
| 47 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 9.82E-03 |
| 48 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.02E-02 |
| 49 | GO:0008810: cellulase activity | 1.04E-02 |
| 50 | GO:0005102: receptor binding | 1.17E-02 |
| 51 | GO:0016887: ATPase activity | 1.44E-02 |
| 52 | GO:0016791: phosphatase activity | 1.74E-02 |
| 53 | GO:0008237: metallopeptidase activity | 1.81E-02 |
| 54 | GO:0016413: O-acetyltransferase activity | 1.89E-02 |
| 55 | GO:0020037: heme binding | 2.29E-02 |
| 56 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.81E-02 |
| 57 | GO:0003993: acid phosphatase activity | 2.90E-02 |
| 58 | GO:0000149: SNARE binding | 2.99E-02 |
| 59 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.99E-02 |
| 60 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.09E-02 |
| 61 | GO:0042803: protein homodimerization activity | 3.31E-02 |
| 62 | GO:0004871: signal transducer activity | 3.31E-02 |
| 63 | GO:0005484: SNAP receptor activity | 3.37E-02 |
| 64 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 3.41E-02 |
| 65 | GO:0035091: phosphatidylinositol binding | 3.56E-02 |
| 66 | GO:0016787: hydrolase activity | 3.58E-02 |
| 67 | GO:0005198: structural molecule activity | 3.66E-02 |
| 68 | GO:0051287: NAD binding | 3.86E-02 |
| 69 | GO:0031625: ubiquitin protein ligase binding | 4.48E-02 |
| 70 | GO:0005515: protein binding | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005794: Golgi apparatus | 1.57E-07 |
| 2 | GO:0005789: endoplasmic reticulum membrane | 2.78E-07 |
| 3 | GO:0005783: endoplasmic reticulum | 1.13E-05 |
| 4 | GO:0016021: integral component of membrane | 3.91E-05 |
| 5 | GO:0001405: presequence translocase-associated import motor | 1.54E-04 |
| 6 | GO:0045252: oxoglutarate dehydrogenase complex | 1.54E-04 |
| 7 | GO:0017119: Golgi transport complex | 2.40E-04 |
| 8 | GO:0005886: plasma membrane | 2.77E-04 |
| 9 | GO:0030134: ER to Golgi transport vesicle | 3.51E-04 |
| 10 | GO:0009506: plasmodesma | 5.39E-04 |
| 11 | GO:0071782: endoplasmic reticulum tubular network | 8.23E-04 |
| 12 | GO:0030658: transport vesicle membrane | 8.23E-04 |
| 13 | GO:0000164: protein phosphatase type 1 complex | 1.38E-03 |
| 14 | GO:0005801: cis-Golgi network | 2.03E-03 |
| 15 | GO:0009986: cell surface | 2.39E-03 |
| 16 | GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane | 2.39E-03 |
| 17 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 2.77E-03 |
| 18 | GO:0005779: integral component of peroxisomal membrane | 3.16E-03 |
| 19 | GO:0031902: late endosome membrane | 3.81E-03 |
| 20 | GO:0030665: clathrin-coated vesicle membrane | 4.01E-03 |
| 21 | GO:0005795: Golgi stack | 6.95E-03 |
| 22 | GO:0031410: cytoplasmic vesicle | 9.82E-03 |
| 23 | GO:0005829: cytosol | 1.24E-02 |
| 24 | GO:0019898: extrinsic component of membrane | 1.44E-02 |
| 25 | GO:0031965: nuclear membrane | 1.44E-02 |
| 26 | GO:0032580: Golgi cisterna membrane | 1.74E-02 |
| 27 | GO:0046658: anchored component of plasma membrane | 1.82E-02 |
| 28 | GO:0005788: endoplasmic reticulum lumen | 2.05E-02 |
| 29 | GO:0000151: ubiquitin ligase complex | 2.38E-02 |
| 30 | GO:0005774: vacuolar membrane | 2.60E-02 |
| 31 | GO:0000325: plant-type vacuole | 2.64E-02 |
| 32 | GO:0031201: SNARE complex | 3.18E-02 |
| 33 | GO:0005622: intracellular | 3.51E-02 |
| 34 | GO:0016020: membrane | 3.53E-02 |
| 35 | GO:0005743: mitochondrial inner membrane | 3.62E-02 |
| 36 | GO:0005635: nuclear envelope | 4.37E-02 |