co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G55740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
7	GO:0017038: protein import	0.00E+00
8	GO:0070125: mitochondrial translational elongation	0.00E+00
9	GO:0006573: valine metabolic process	0.00E+00
10	GO:0090279: regulation of calcium ion import	0.00E+00
11	GO:0045184: establishment of protein localization	0.00E+00
12	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
13	GO:0015882: L-ascorbic acid transport	0.00E+00
14	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
15	GO:0070979: protein K11-linked ubiquitination	0.00E+00
16	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
17	GO:0042820: vitamin B6 catabolic process	0.00E+00
18	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
19	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
20	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
21	GO:0043488: regulation of mRNA stability	0.00E+00
22	GO:0061157: mRNA destabilization	0.00E+00
23	GO:2000469: negative regulation of peroxidase activity	0.00E+00
24	GO:1905177: tracheary element differentiation	0.00E+00
25	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
26	GO:0008298: intracellular mRNA localization	0.00E+00
27	GO:0030155: regulation of cell adhesion	0.00E+00
28	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
29	GO:0019323: pentose catabolic process	0.00E+00
30	GO:0090706: specification of plant organ position	0.00E+00
31	GO:0071474: cellular hyperosmotic response	0.00E+00
32	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
33	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
34	GO:0006399: tRNA metabolic process	0.00E+00
35	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
36	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
37	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
38	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
39	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
40	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
41	GO:0009658: chloroplast organization	7.66E-09
42	GO:0010027: thylakoid membrane organization	4.84E-07
43	GO:1901259: chloroplast rRNA processing	3.77E-06
44	GO:0015995: chlorophyll biosynthetic process	1.18E-05
45	GO:0015979: photosynthesis	1.91E-05
46	GO:0045038: protein import into chloroplast thylakoid membrane	4.45E-05
47	GO:1900871: chloroplast mRNA modification	6.73E-05
48	GO:0018026: peptidyl-lysine monomethylation	6.73E-05
49	GO:0005977: glycogen metabolic process	2.01E-04
50	GO:0032502: developmental process	2.48E-04
51	GO:0006353: DNA-templated transcription, termination	2.55E-04
52	GO:0009657: plastid organization	3.41E-04
53	GO:0071482: cellular response to light stimulus	3.41E-04
54	GO:0032544: plastid translation	3.41E-04
55	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.92E-04
56	GO:0046739: transport of virus in multicellular host	3.92E-04
57	GO:0010239: chloroplast mRNA processing	3.92E-04
58	GO:2001141: regulation of RNA biosynthetic process	3.92E-04
59	GO:0009052: pentose-phosphate shunt, non-oxidative branch	3.92E-04
60	GO:0031425: chloroplast RNA processing	5.52E-04
61	GO:1900865: chloroplast RNA modification	5.52E-04
62	GO:0006021: inositol biosynthetic process	6.34E-04
63	GO:0009765: photosynthesis, light harvesting	6.34E-04
64	GO:0010021: amylopectin biosynthetic process	6.34E-04
65	GO:0022622: root system development	6.34E-04
66	GO:0006415: translational termination	8.25E-04
67	GO:0006662: glycerol ether metabolic process	9.15E-04
68	GO:0016123: xanthophyll biosynthetic process	9.31E-04
69	GO:0080110: sporopollenin biosynthetic process	9.31E-04
70	GO:0005983: starch catabolic process	9.84E-04
71	GO:2000012: regulation of auxin polar transport	1.16E-03
72	GO:0040008: regulation of growth	1.27E-03
73	GO:0042793: transcription from plastid promoter	1.28E-03
74	GO:0009959: negative gravitropism	1.28E-03
75	GO:0009416: response to light stimulus	1.31E-03
76	GO:0030198: extracellular matrix organization	1.32E-03
77	GO:0000967: rRNA 5'-end processing	1.32E-03
78	GO:0043007: maintenance of rDNA	1.32E-03
79	GO:0051247: positive regulation of protein metabolic process	1.32E-03
80	GO:1902458: positive regulation of stomatal opening	1.32E-03
81	GO:0090558: plant epidermis development	1.32E-03
82	GO:0010028: xanthophyll cycle	1.32E-03
83	GO:0070509: calcium ion import	1.32E-03
84	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	1.32E-03
85	GO:0015904: tetracycline transport	1.32E-03
86	GO:0031426: polycistronic mRNA processing	1.32E-03
87	GO:2000905: negative regulation of starch metabolic process	1.32E-03
88	GO:0044262: cellular carbohydrate metabolic process	1.32E-03
89	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	1.32E-03
90	GO:0005991: trehalose metabolic process	1.32E-03
91	GO:0048363: mucilage pectin metabolic process	1.32E-03
92	GO:0051775: response to redox state	1.32E-03
93	GO:0010450: inflorescence meristem growth	1.32E-03
94	GO:0000305: response to oxygen radical	1.32E-03
95	GO:0000023: maltose metabolic process	1.32E-03
96	GO:0006419: alanyl-tRNA aminoacylation	1.32E-03
97	GO:0043266: regulation of potassium ion transport	1.32E-03
98	GO:0010063: positive regulation of trichoblast fate specification	1.32E-03
99	GO:0010480: microsporocyte differentiation	1.32E-03
100	GO:0006659: phosphatidylserine biosynthetic process	1.32E-03
101	GO:0042659: regulation of cell fate specification	1.32E-03
102	GO:0006551: leucine metabolic process	1.32E-03
103	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	1.32E-03
104	GO:0000025: maltose catabolic process	1.32E-03
105	GO:0042371: vitamin K biosynthetic process	1.32E-03
106	GO:0043686: co-translational protein modification	1.32E-03
107	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.32E-03
108	GO:2000021: regulation of ion homeostasis	1.32E-03
109	GO:0035987: endodermal cell differentiation	1.32E-03
110	GO:0070574: cadmium ion transmembrane transport	1.32E-03
111	GO:0000476: maturation of 4.5S rRNA	1.32E-03
112	GO:0009443: pyridoxal 5'-phosphate salvage	1.32E-03
113	GO:0005980: glycogen catabolic process	1.32E-03
114	GO:0010207: photosystem II assembly	1.36E-03
115	GO:0009451: RNA modification	1.48E-03
116	GO:0042372: phylloquinone biosynthetic process	1.70E-03
117	GO:0009082: branched-chain amino acid biosynthetic process	1.70E-03
118	GO:0009099: valine biosynthetic process	1.70E-03
119	GO:0009793: embryo development ending in seed dormancy	1.86E-03
120	GO:0032880: regulation of protein localization	2.19E-03
121	GO:0030307: positive regulation of cell growth	2.19E-03
122	GO:0048437: floral organ development	2.19E-03
123	GO:0042255: ribosome assembly	2.74E-03
124	GO:0046620: regulation of organ growth	2.74E-03
125	GO:0055075: potassium ion homeostasis	2.74E-03
126	GO:0009629: response to gravity	2.93E-03
127	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.93E-03
128	GO:0006568: tryptophan metabolic process	2.93E-03
129	GO:0006423: cysteinyl-tRNA aminoacylation	2.93E-03
130	GO:2000123: positive regulation of stomatal complex development	2.93E-03
131	GO:0010024: phytochromobilin biosynthetic process	2.93E-03
132	GO:0051262: protein tetramerization	2.93E-03
133	GO:1901959: positive regulation of cutin biosynthetic process	2.93E-03
134	GO:0034470: ncRNA processing	2.93E-03
135	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.93E-03
136	GO:0006432: phenylalanyl-tRNA aminoacylation	2.93E-03
137	GO:0007154: cell communication	2.93E-03
138	GO:0000256: allantoin catabolic process	2.93E-03
139	GO:0071668: plant-type cell wall assembly	2.93E-03
140	GO:1904143: positive regulation of carotenoid biosynthetic process	2.93E-03
141	GO:0080009: mRNA methylation	2.93E-03
142	GO:0009786: regulation of asymmetric cell division	2.93E-03
143	GO:0060359: response to ammonium ion	2.93E-03
144	GO:0048255: mRNA stabilization	2.93E-03
145	GO:0001682: tRNA 5'-leader removal	2.93E-03
146	GO:0009733: response to auxin	2.98E-03
147	GO:0010497: plasmodesmata-mediated intercellular transport	3.36E-03
148	GO:0009097: isoleucine biosynthetic process	3.36E-03
149	GO:0048507: meristem development	4.05E-03
150	GO:0016117: carotenoid biosynthetic process	4.22E-03
151	GO:0048527: lateral root development	4.30E-03
152	GO:0080022: primary root development	4.66E-03
153	GO:0008033: tRNA processing	4.66E-03
154	GO:0010087: phloem or xylem histogenesis	4.66E-03
155	GO:0009098: leucine biosynthetic process	4.81E-03
156	GO:0045165: cell fate commitment	4.89E-03
157	GO:0048586: regulation of long-day photoperiodism, flowering	4.89E-03
158	GO:0006788: heme oxidation	4.89E-03
159	GO:0006954: inflammatory response	4.89E-03
160	GO:0010136: ureide catabolic process	4.89E-03
161	GO:0034051: negative regulation of plant-type hypersensitive response	4.89E-03
162	GO:1904278: positive regulation of wax biosynthetic process	4.89E-03
163	GO:0031145: anaphase-promoting complex-dependent catabolic process	4.89E-03
164	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	4.89E-03
165	GO:0010623: programmed cell death involved in cell development	4.89E-03
166	GO:0033591: response to L-ascorbic acid	4.89E-03
167	GO:0048281: inflorescence morphogenesis	4.89E-03
168	GO:0006696: ergosterol biosynthetic process	4.89E-03
169	GO:0090708: specification of plant organ axis polarity	4.89E-03
170	GO:0090153: regulation of sphingolipid biosynthetic process	4.89E-03
171	GO:0043157: response to cation stress	4.89E-03
172	GO:0072661: protein targeting to plasma membrane	4.89E-03
173	GO:0010305: leaf vascular tissue pattern formation	5.14E-03
174	GO:0010182: sugar mediated signaling pathway	5.14E-03
175	GO:0009958: positive gravitropism	5.14E-03
176	GO:0034599: cellular response to oxidative stress	5.30E-03
177	GO:0009646: response to absence of light	5.66E-03
178	GO:0019252: starch biosynthetic process	6.19E-03
179	GO:0008654: phospholipid biosynthetic process	6.19E-03
180	GO:0009742: brassinosteroid mediated signaling pathway	6.30E-03
181	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.41E-03
182	GO:0043085: positive regulation of catalytic activity	6.55E-03
183	GO:0006352: DNA-templated transcription, initiation	6.55E-03
184	GO:0009773: photosynthetic electron transport in photosystem I	6.55E-03
185	GO:0019684: photosynthesis, light reaction	6.55E-03
186	GO:0010306: rhamnogalacturonan II biosynthetic process	7.18E-03
187	GO:0051016: barbed-end actin filament capping	7.18E-03
188	GO:0009226: nucleotide-sugar biosynthetic process	7.18E-03
189	GO:0006166: purine ribonucleoside salvage	7.18E-03
190	GO:0031048: chromatin silencing by small RNA	7.18E-03
191	GO:0010148: transpiration	7.18E-03
192	GO:0010071: root meristem specification	7.18E-03
193	GO:0010731: protein glutathionylation	7.18E-03
194	GO:0007231: osmosensory signaling pathway	7.18E-03
195	GO:0009102: biotin biosynthetic process	7.18E-03
196	GO:0030071: regulation of mitotic metaphase/anaphase transition	7.18E-03
197	GO:0016556: mRNA modification	7.18E-03
198	GO:0006168: adenine salvage	7.18E-03
199	GO:0009152: purine ribonucleotide biosynthetic process	7.18E-03
200	GO:0046653: tetrahydrofolate metabolic process	7.18E-03
201	GO:0006107: oxaloacetate metabolic process	7.18E-03
202	GO:0043572: plastid fission	7.18E-03
203	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	7.18E-03
204	GO:0090308: regulation of methylation-dependent chromatin silencing	7.18E-03
205	GO:0019048: modulation by virus of host morphology or physiology	7.18E-03
206	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	7.18E-03
207	GO:0006145: purine nucleobase catabolic process	7.18E-03
208	GO:0016024: CDP-diacylglycerol biosynthetic process	7.53E-03
209	GO:0005975: carbohydrate metabolic process	7.84E-03
210	GO:1901657: glycosyl compound metabolic process	8.02E-03
211	GO:0010588: cotyledon vascular tissue pattern formation	8.59E-03
212	GO:0009828: plant-type cell wall loosening	8.69E-03
213	GO:0045454: cell redox homeostasis	8.80E-03
214	GO:0010020: chloroplast fission	9.73E-03
215	GO:0030104: water homeostasis	9.76E-03
216	GO:0045723: positive regulation of fatty acid biosynthetic process	9.76E-03
217	GO:0033500: carbohydrate homeostasis	9.76E-03
218	GO:0051567: histone H3-K9 methylation	9.76E-03
219	GO:2000038: regulation of stomatal complex development	9.76E-03
220	GO:0010508: positive regulation of autophagy	9.76E-03
221	GO:0010109: regulation of photosynthesis	9.76E-03
222	GO:0006546: glycine catabolic process	9.76E-03
223	GO:0008295: spermidine biosynthetic process	9.76E-03
224	GO:0006749: glutathione metabolic process	9.76E-03
225	GO:0042274: ribosomal small subunit biogenesis	9.76E-03
226	GO:0006734: NADH metabolic process	9.76E-03
227	GO:0006661: phosphatidylinositol biosynthetic process	9.76E-03
228	GO:2000306: positive regulation of photomorphogenesis	9.76E-03
229	GO:0006109: regulation of carbohydrate metabolic process	9.76E-03
230	GO:0006221: pyrimidine nucleotide biosynthetic process	9.76E-03
231	GO:0010107: potassium ion import	9.76E-03
232	GO:0009664: plant-type cell wall organization	1.04E-02
233	GO:0019853: L-ascorbic acid biosynthetic process	1.09E-02
234	GO:0070588: calcium ion transmembrane transport	1.09E-02
235	GO:0009790: embryo development	1.11E-02
236	GO:0009734: auxin-activated signaling pathway	1.16E-02
237	GO:0009107: lipoate biosynthetic process	1.26E-02
238	GO:1902183: regulation of shoot apical meristem development	1.26E-02
239	GO:0016120: carotene biosynthetic process	1.26E-02
240	GO:0044209: AMP salvage	1.26E-02
241	GO:0032543: mitochondrial translation	1.26E-02
242	GO:0098719: sodium ion import across plasma membrane	1.26E-02
243	GO:0006564: L-serine biosynthetic process	1.26E-02
244	GO:0010236: plastoquinone biosynthetic process	1.26E-02
245	GO:0010158: abaxial cell fate specification	1.26E-02
246	GO:0032876: negative regulation of DNA endoreduplication	1.26E-02
247	GO:0010375: stomatal complex patterning	1.26E-02
248	GO:0031365: N-terminal protein amino acid modification	1.26E-02
249	GO:0000304: response to singlet oxygen	1.26E-02
250	GO:0055114: oxidation-reduction process	1.28E-02
251	GO:0009944: polarity specification of adaxial/abaxial axis	1.36E-02
252	GO:0006810: transport	1.47E-02
253	GO:0006397: mRNA processing	1.51E-02
254	GO:0007017: microtubule-based process	1.51E-02
255	GO:0051302: regulation of cell division	1.51E-02
256	GO:0006418: tRNA aminoacylation for protein translation	1.51E-02
257	GO:0048367: shoot system development	1.57E-02
258	GO:0032973: amino acid export	1.58E-02
259	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.58E-02
260	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.58E-02
261	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.58E-02
262	GO:0033365: protein localization to organelle	1.58E-02
263	GO:0000741: karyogamy	1.58E-02
264	GO:0046855: inositol phosphate dephosphorylation	1.58E-02
265	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.58E-02
266	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.58E-02
267	GO:0016458: gene silencing	1.58E-02
268	GO:0050665: hydrogen peroxide biosynthetic process	1.58E-02
269	GO:0016554: cytidine to uridine editing	1.58E-02
270	GO:0010405: arabinogalactan protein metabolic process	1.58E-02
271	GO:0006655: phosphatidylglycerol biosynthetic process	1.58E-02
272	GO:0061077: chaperone-mediated protein folding	1.66E-02
273	GO:0006730: one-carbon metabolic process	1.82E-02
274	GO:0030245: cellulose catabolic process	1.82E-02
275	GO:0042026: protein refolding	1.91E-02
276	GO:0080086: stamen filament development	1.91E-02
277	GO:0006458: 'de novo' protein folding	1.91E-02
278	GO:2000033: regulation of seed dormancy process	1.91E-02
279	GO:2000067: regulation of root morphogenesis	1.91E-02
280	GO:0017148: negative regulation of translation	1.91E-02
281	GO:0048280: vesicle fusion with Golgi apparatus	1.91E-02
282	GO:0009955: adaxial/abaxial pattern specification	1.91E-02
283	GO:0030488: tRNA methylation	1.91E-02
284	GO:0010189: vitamin E biosynthetic process	1.91E-02
285	GO:0009854: oxidative photosynthetic carbon pathway	1.91E-02
286	GO:0009686: gibberellin biosynthetic process	1.99E-02
287	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.99E-02
288	GO:0010584: pollen exine formation	2.17E-02
289	GO:0070370: cellular heat acclimation	2.27E-02
290	GO:0010161: red light signaling pathway	2.27E-02
291	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.27E-02
292	GO:0006955: immune response	2.27E-02
293	GO:0010444: guard mother cell differentiation	2.27E-02
294	GO:0048528: post-embryonic root development	2.27E-02
295	GO:0009772: photosynthetic electron transport in photosystem II	2.27E-02
296	GO:0043090: amino acid import	2.27E-02
297	GO:0006400: tRNA modification	2.27E-02
298	GO:0051693: actin filament capping	2.27E-02
299	GO:0010103: stomatal complex morphogenesis	2.27E-02
300	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.27E-02
301	GO:0008284: positive regulation of cell proliferation	2.35E-02
302	GO:0070413: trehalose metabolism in response to stress	2.65E-02
303	GO:0009690: cytokinin metabolic process	2.65E-02
304	GO:0006875: cellular metal ion homeostasis	2.65E-02
305	GO:0006605: protein targeting	2.65E-02
306	GO:0010078: maintenance of root meristem identity	2.65E-02
307	GO:0007155: cell adhesion	2.65E-02
308	GO:0048564: photosystem I assembly	2.65E-02
309	GO:0032875: regulation of DNA endoreduplication	2.65E-02
310	GO:2000070: regulation of response to water deprivation	2.65E-02
311	GO:0000105: histidine biosynthetic process	2.65E-02
312	GO:0010197: polar nucleus fusion	2.75E-02
313	GO:0048868: pollen tube development	2.75E-02
314	GO:0045489: pectin biosynthetic process	2.75E-02
315	GO:0010093: specification of floral organ identity	3.05E-02
316	GO:0010099: regulation of photomorphogenesis	3.05E-02
317	GO:0010100: negative regulation of photomorphogenesis	3.05E-02
318	GO:0010204: defense response signaling pathway, resistance gene-independent	3.05E-02
319	GO:0015996: chlorophyll catabolic process	3.05E-02
320	GO:0001558: regulation of cell growth	3.05E-02
321	GO:0043562: cellular response to nitrogen levels	3.05E-02
322	GO:0007186: G-protein coupled receptor signaling pathway	3.05E-02
323	GO:0017004: cytochrome complex assembly	3.05E-02
324	GO:0009791: post-embryonic development	3.17E-02
325	GO:0080144: amino acid homeostasis	3.48E-02
326	GO:2000024: regulation of leaf development	3.48E-02
327	GO:0090333: regulation of stomatal closure	3.48E-02
328	GO:0046916: cellular transition metal ion homeostasis	3.48E-02
329	GO:0098656: anion transmembrane transport	3.48E-02
330	GO:0006783: heme biosynthetic process	3.48E-02
331	GO:0046685: response to arsenic-containing substance	3.48E-02
332	GO:0000373: Group II intron splicing	3.48E-02
333	GO:0009821: alkaloid biosynthetic process	3.48E-02
334	GO:0000902: cell morphogenesis	3.48E-02
335	GO:2000280: regulation of root development	3.92E-02
336	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.92E-02
337	GO:0051453: regulation of intracellular pH	3.92E-02
338	GO:0009638: phototropism	3.92E-02
339	GO:0043067: regulation of programmed cell death	3.92E-02
340	GO:0006779: porphyrin-containing compound biosynthetic process	3.92E-02
341	GO:0009641: shade avoidance	4.37E-02
342	GO:0009299: mRNA transcription	4.37E-02
343	GO:0006782: protoporphyrinogen IX biosynthetic process	4.37E-02
344	GO:0006949: syncytium formation	4.37E-02
345	GO:0030422: production of siRNA involved in RNA interference	4.37E-02
346	GO:0010162: seed dormancy process	4.37E-02
347	GO:0048829: root cap development	4.37E-02
348	GO:0045036: protein targeting to chloroplast	4.37E-02
349	GO:0006896: Golgi to vacuole transport	4.37E-02
350	GO:0009409: response to cold	4.66E-02
351	GO:0009089: lysine biosynthetic process via diaminopimelate	4.85E-02
352	GO:0010216: maintenance of DNA methylation	4.85E-02
353	GO:0009073: aromatic amino acid family biosynthetic process	4.85E-02
354	GO:0009684: indoleacetic acid biosynthetic process	4.85E-02
355	GO:0018119: peptidyl-cysteine S-nitrosylation	4.85E-02
356	GO:0048229: gametophyte development	4.85E-02
357	GO:0006816: calcium ion transport	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0050613: delta14-sterol reductase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
7	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
8	GO:0005048: signal sequence binding	0.00E+00
9	GO:0010276: phytol kinase activity	0.00E+00
10	GO:0005201: extracellular matrix structural constituent	0.00E+00
11	GO:0046905: phytoene synthase activity	0.00E+00
12	GO:0004076: biotin synthase activity	0.00E+00
13	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
14	GO:0004823: leucine-tRNA ligase activity	0.00E+00
15	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
16	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
17	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
18	GO:0005363: maltose transmembrane transporter activity	0.00E+00
19	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
20	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
21	GO:0005528: FK506 binding	1.48E-06
22	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.67E-05
23	GO:0019156: isoamylase activity	6.73E-05
24	GO:0003723: RNA binding	1.78E-04
25	GO:0002161: aminoacyl-tRNA editing activity	2.01E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	2.01E-04
27	GO:0070402: NADPH binding	2.01E-04
28	GO:0016149: translation release factor activity, codon specific	3.92E-04
29	GO:0001872: (1->3)-beta-D-glucan binding	3.92E-04
30	GO:0016851: magnesium chelatase activity	3.92E-04
31	GO:0003747: translation release factor activity	4.39E-04
32	GO:0045430: chalcone isomerase activity	6.34E-04
33	GO:0019199: transmembrane receptor protein kinase activity	6.34E-04
34	GO:0001053: plastid sigma factor activity	6.34E-04
35	GO:0043495: protein anchor	6.34E-04
36	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.34E-04
37	GO:0016987: sigma factor activity	6.34E-04
38	GO:0003727: single-stranded RNA binding	6.34E-04
39	GO:0016279: protein-lysine N-methyltransferase activity	6.34E-04
40	GO:0019843: rRNA binding	6.86E-04
41	GO:0047134: protein-disulfide reductase activity	7.21E-04
42	GO:0016773: phosphotransferase activity, alcohol group as acceptor	9.31E-04
43	GO:0000049: tRNA binding	9.84E-04
44	GO:0004791: thioredoxin-disulfide reductase activity	1.02E-03
45	GO:0031072: heat shock protein binding	1.16E-03
46	GO:0004556: alpha-amylase activity	1.28E-03
47	GO:0004462: lactoylglutathione lyase activity	1.28E-03
48	GO:0004813: alanine-tRNA ligase activity	1.32E-03
49	GO:0004856: xylulokinase activity	1.32E-03
50	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.32E-03
51	GO:0004134: 4-alpha-glucanotransferase activity	1.32E-03
52	GO:0004645: phosphorylase activity	1.32E-03
53	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.32E-03
54	GO:0042586: peptide deformylase activity	1.32E-03
55	GO:0052381: tRNA dimethylallyltransferase activity	1.32E-03
56	GO:0019203: carbohydrate phosphatase activity	1.32E-03
57	GO:0051996: squalene synthase activity	1.32E-03
58	GO:0050139: nicotinate-N-glucosyltransferase activity	1.32E-03
59	GO:0010313: phytochrome binding	1.32E-03
60	GO:0003984: acetolactate synthase activity	1.32E-03
61	GO:0008158: hedgehog receptor activity	1.32E-03
62	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.32E-03
63	GO:0005080: protein kinase C binding	1.32E-03
64	GO:0008242: omega peptidase activity	1.32E-03
65	GO:0005227: calcium activated cation channel activity	1.32E-03
66	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.32E-03
67	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.32E-03
68	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.32E-03
69	GO:0008746: NAD(P)+ transhydrogenase activity	1.32E-03
70	GO:0008184: glycogen phosphorylase activity	1.32E-03
71	GO:0042834: peptidoglycan binding	1.32E-03
72	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.32E-03
73	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.32E-03
74	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.32E-03
75	GO:0050308: sugar-phosphatase activity	1.32E-03
76	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.32E-03
77	GO:0051777: ent-kaurenoate oxidase activity	1.32E-03
78	GO:0008266: poly(U) RNA binding	1.36E-03
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.55E-03
80	GO:0016597: amino acid binding	2.07E-03
81	GO:0019899: enzyme binding	2.19E-03
82	GO:0004033: aldo-keto reductase (NADP) activity	2.74E-03
83	GO:0003852: 2-isopropylmalate synthase activity	2.93E-03
84	GO:0008493: tetracycline transporter activity	2.93E-03
85	GO:0052833: inositol monophosphate 4-phosphatase activity	2.93E-03
86	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	2.93E-03
87	GO:0016630: protochlorophyllide reductase activity	2.93E-03
88	GO:0080041: ADP-ribose pyrophosphohydrolase activity	2.93E-03
89	GO:0004826: phenylalanine-tRNA ligase activity	2.93E-03
90	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.93E-03
91	GO:0043425: bHLH transcription factor binding	2.93E-03
92	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	2.93E-03
93	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	2.93E-03
94	GO:0004512: inositol-3-phosphate synthase activity	2.93E-03
95	GO:0004617: phosphoglycerate dehydrogenase activity	2.93E-03
96	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.93E-03
97	GO:0048531: beta-1,3-galactosyltransferase activity	2.93E-03
98	GO:0004047: aminomethyltransferase activity	2.93E-03
99	GO:0034722: gamma-glutamyl-peptidase activity	2.93E-03
100	GO:0004766: spermidine synthase activity	2.93E-03
101	GO:0052832: inositol monophosphate 3-phosphatase activity	2.93E-03
102	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.93E-03
103	GO:0004312: fatty acid synthase activity	2.93E-03
104	GO:0004817: cysteine-tRNA ligase activity	2.93E-03
105	GO:0004750: ribulose-phosphate 3-epimerase activity	2.93E-03
106	GO:0017118: lipoyltransferase activity	2.93E-03
107	GO:0004362: glutathione-disulfide reductase activity	2.93E-03
108	GO:0008805: carbon-monoxide oxygenase activity	2.93E-03
109	GO:0008934: inositol monophosphate 1-phosphatase activity	2.93E-03
110	GO:0016788: hydrolase activity, acting on ester bonds	3.87E-03
111	GO:0008864: formyltetrahydrofolate deformylase activity	4.89E-03
112	GO:0005504: fatty acid binding	4.89E-03
113	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	4.89E-03
114	GO:0004848: ureidoglycolate hydrolase activity	4.89E-03
115	GO:0015462: ATPase-coupled protein transmembrane transporter activity	4.89E-03
116	GO:0004180: carboxypeptidase activity	4.89E-03
117	GO:0004751: ribose-5-phosphate isomerase activity	4.89E-03
118	GO:0045174: glutathione dehydrogenase (ascorbate) activity	4.89E-03
119	GO:0016805: dipeptidase activity	4.89E-03
120	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	4.89E-03
121	GO:0016992: lipoate synthase activity	4.89E-03
122	GO:0003913: DNA photolyase activity	4.89E-03
123	GO:0008047: enzyme activator activity	5.64E-03
124	GO:0004519: endonuclease activity	6.33E-03
125	GO:0009041: uridylate kinase activity	7.18E-03
126	GO:0003999: adenine phosphoribosyltransferase activity	7.18E-03
127	GO:0015086: cadmium ion transmembrane transporter activity	7.18E-03
128	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	7.18E-03
129	GO:0052655: L-valine transaminase activity	7.18E-03
130	GO:0035197: siRNA binding	7.18E-03
131	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.18E-03
132	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	7.18E-03
133	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	7.18E-03
134	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	7.18E-03
135	GO:0052656: L-isoleucine transaminase activity	7.18E-03
136	GO:0043023: ribosomal large subunit binding	7.18E-03
137	GO:0052654: L-leucine transaminase activity	7.18E-03
138	GO:0048027: mRNA 5'-UTR binding	7.18E-03
139	GO:0000976: transcription regulatory region sequence-specific DNA binding	7.53E-03
140	GO:0005262: calcium channel activity	8.59E-03
141	GO:0008237: metallopeptidase activity	9.40E-03
142	GO:0005200: structural constituent of cytoskeleton	9.40E-03
143	GO:0008083: growth factor activity	9.73E-03
144	GO:0009011: starch synthase activity	9.76E-03
145	GO:0042277: peptide binding	9.76E-03
146	GO:0004392: heme oxygenase (decyclizing) activity	9.76E-03
147	GO:0004045: aminoacyl-tRNA hydrolase activity	9.76E-03
148	GO:0008891: glycolate oxidase activity	9.76E-03
149	GO:0080032: methyl jasmonate esterase activity	9.76E-03
150	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	9.76E-03
151	GO:0004659: prenyltransferase activity	9.76E-03
152	GO:0004084: branched-chain-amino-acid transaminase activity	9.76E-03
153	GO:0016491: oxidoreductase activity	1.06E-02
154	GO:0003690: double-stranded DNA binding	1.22E-02
155	GO:0003959: NADPH dehydrogenase activity	1.26E-02
156	GO:0005275: amine transmembrane transporter activity	1.26E-02
157	GO:0016846: carbon-sulfur lyase activity	1.26E-02
158	GO:0005525: GTP binding	1.28E-02
159	GO:0102483: scopolin beta-glucosidase activity	1.35E-02
160	GO:0003924: GTPase activity	1.38E-02
161	GO:0005345: purine nucleobase transmembrane transporter activity	1.51E-02
162	GO:2001070: starch binding	1.58E-02
163	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.58E-02
164	GO:0016208: AMP binding	1.58E-02
165	GO:0004605: phosphatidate cytidylyltransferase activity	1.58E-02
166	GO:0080030: methyl indole-3-acetate esterase activity	1.58E-02
167	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.58E-02
168	GO:0004526: ribonuclease P activity	1.58E-02
169	GO:0015081: sodium ion transmembrane transporter activity	1.58E-02
170	GO:0016615: malate dehydrogenase activity	1.58E-02
171	GO:0008200: ion channel inhibitor activity	1.58E-02
172	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.58E-02
173	GO:0004176: ATP-dependent peptidase activity	1.66E-02
174	GO:0004222: metalloendopeptidase activity	1.75E-02
175	GO:0030060: L-malate dehydrogenase activity	1.91E-02
176	GO:0005261: cation channel activity	1.91E-02
177	GO:0003730: mRNA 3'-UTR binding	1.91E-02
178	GO:0008195: phosphatidate phosphatase activity	1.91E-02
179	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.91E-02
180	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.91E-02
181	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.91E-02
182	GO:0030570: pectate lyase activity	1.99E-02
183	GO:0008810: cellulase activity	1.99E-02
184	GO:0022891: substrate-specific transmembrane transporter activity	1.99E-02
185	GO:0051082: unfolded protein binding	1.99E-02
186	GO:0052689: carboxylic ester hydrolase activity	2.03E-02
187	GO:0015035: protein disulfide oxidoreductase activity	2.07E-02
188	GO:0003746: translation elongation factor activity	2.09E-02
189	GO:0008514: organic anion transmembrane transporter activity	2.17E-02
190	GO:0003993: acid phosphatase activity	2.21E-02
191	GO:0042802: identical protein binding	2.24E-02
192	GO:0015103: inorganic anion transmembrane transporter activity	2.27E-02
193	GO:0008422: beta-glucosidase activity	2.33E-02
194	GO:0004812: aminoacyl-tRNA ligase activity	2.35E-02
195	GO:0043022: ribosome binding	2.65E-02
196	GO:0008312: 7S RNA binding	2.65E-02
197	GO:0003824: catalytic activity	2.79E-02
198	GO:0050662: coenzyme binding	2.95E-02
199	GO:0046914: transition metal ion binding	3.05E-02
200	GO:0008173: RNA methyltransferase activity	3.05E-02
201	GO:0016829: lyase activity	3.12E-02
202	GO:0048038: quinone binding	3.39E-02
203	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.48E-02
204	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.48E-02
205	GO:0016844: strictosidine synthase activity	3.92E-02
206	GO:0016791: phosphatase activity	4.11E-02
207	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.17E-02
208	GO:0015020: glucuronosyltransferase activity	4.37E-02
209	GO:0008483: transaminase activity	4.37E-02
210	GO:0015171: amino acid transmembrane transporter activity	4.73E-02
211	GO:0015386: potassium:proton antiporter activity	4.85E-02
212	GO:0044183: protein binding involved in protein folding	4.85E-02
213	GO:0008559: xenobiotic-transporting ATPase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	7.52E-61
4	GO:0009570: chloroplast stroma	1.14E-33
5	GO:0009535: chloroplast thylakoid membrane	4.56E-13
6	GO:0009941: chloroplast envelope	1.21E-12
7	GO:0009543: chloroplast thylakoid lumen	4.44E-10
8	GO:0009508: plastid chromosome	8.28E-09
9	GO:0009295: nucleoid	1.60E-08
10	GO:0009534: chloroplast thylakoid	7.22E-08
11	GO:0031969: chloroplast membrane	2.49E-07
12	GO:0009579: thylakoid	3.65E-07
13	GO:0009654: photosystem II oxygen evolving complex	3.53E-05
14	GO:0080085: signal recognition particle, chloroplast targeting	6.73E-05
15	GO:0010007: magnesium chelatase complex	2.01E-04
16	GO:0031977: thylakoid lumen	3.43E-04
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.39E-04
18	GO:0030529: intracellular ribonucleoprotein complex	4.48E-04
19	GO:0019898: extrinsic component of membrane	1.14E-03
20	GO:0009344: nitrite reductase complex [NAD(P)H]	1.32E-03
21	GO:0009547: plastid ribosome	1.32E-03
22	GO:0009706: chloroplast inner membrane	1.55E-03
23	GO:0009536: plastid	1.79E-03
24	GO:0010319: stromule	1.88E-03
25	GO:0042651: thylakoid membrane	2.38E-03
26	GO:0009501: amyloplast	2.74E-03
27	GO:0008290: F-actin capping protein complex	2.93E-03
28	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.93E-03
29	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.36E-03
30	GO:0042644: chloroplast nucleoid	4.05E-03
31	GO:0033281: TAT protein transport complex	4.89E-03
32	GO:0030139: endocytic vesicle	4.89E-03
33	GO:0009528: plastid inner membrane	4.89E-03
34	GO:0019897: extrinsic component of plasma membrane	4.89E-03
35	GO:0015630: microtubule cytoskeleton	7.18E-03
36	GO:0030658: transport vesicle membrane	7.18E-03
37	GO:0005719: nuclear euchromatin	7.18E-03
38	GO:0042646: plastid nucleoid	7.18E-03
39	GO:0032585: multivesicular body membrane	7.18E-03
40	GO:0046658: anchored component of plasma membrane	8.13E-03
41	GO:0030095: chloroplast photosystem II	9.73E-03
42	GO:0030663: COPI-coated vesicle membrane	9.76E-03
43	GO:0009527: plastid outer membrane	9.76E-03
44	GO:0005886: plasma membrane	1.14E-02
45	GO:0009707: chloroplast outer membrane	1.54E-02
46	GO:0009533: chloroplast stromal thylakoid	2.27E-02
47	GO:0009986: cell surface	2.27E-02
48	GO:0012507: ER to Golgi transport vesicle membrane	2.65E-02
49	GO:0048226: Casparian strip	2.65E-02
50	GO:0009539: photosystem II reaction center	3.05E-02
51	GO:0009523: photosystem II	3.17E-02
52	GO:0005680: anaphase-promoting complex	3.48E-02
53	GO:0005763: mitochondrial small ribosomal subunit	3.48E-02
54	GO:0045298: tubulin complex	3.48E-02
55	GO:0005720: nuclear heterochromatin	3.48E-02
56	GO:0016021: integral component of membrane	3.75E-02
57	GO:0016604: nuclear body	3.92E-02
58	GO:0015030: Cajal body	3.92E-02
59	GO:0030125: clathrin vesicle coat	4.37E-02
60	GO:0000418: DNA-directed RNA polymerase IV complex	4.37E-02
61	GO:0016459: myosin complex	4.37E-02