co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G55610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072722: response to amitrole	0.00E+00
2	GO:0006903: vesicle targeting	0.00E+00
3	GO:0046680: response to DDT	0.00E+00
4	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
5	GO:0046686: response to cadmium ion	7.55E-07
6	GO:0042176: regulation of protein catabolic process	3.28E-05
7	GO:0030163: protein catabolic process	8.43E-05
8	GO:0035266: meristem growth	1.25E-04
9	GO:0007292: female gamete generation	1.25E-04
10	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.25E-04
11	GO:0000032: cell wall mannoprotein biosynthetic process	1.25E-04
12	GO:0019478: D-amino acid catabolic process	1.25E-04
13	GO:0006511: ubiquitin-dependent protein catabolic process	1.85E-04
14	GO:0009805: coumarin biosynthetic process	2.90E-04
15	GO:0042853: L-alanine catabolic process	2.90E-04
16	GO:0051788: response to misfolded protein	2.90E-04
17	GO:0080026: response to indolebutyric acid	2.90E-04
18	GO:0006996: organelle organization	2.90E-04
19	GO:0009636: response to toxic substance	3.99E-04
20	GO:0006517: protein deglycosylation	4.78E-04
21	GO:0010272: response to silver ion	4.78E-04
22	GO:0033591: response to L-ascorbic acid	4.78E-04
23	GO:0060968: regulation of gene silencing	4.78E-04
24	GO:0006556: S-adenosylmethionine biosynthetic process	4.78E-04
25	GO:0009062: fatty acid catabolic process	4.78E-04
26	GO:0010253: UDP-rhamnose biosynthetic process	4.78E-04
27	GO:0030433: ubiquitin-dependent ERAD pathway	5.76E-04
28	GO:0009298: GDP-mannose biosynthetic process	6.85E-04
29	GO:0006612: protein targeting to membrane	6.85E-04
30	GO:0006893: Golgi to plasma membrane transport	6.85E-04
31	GO:0080024: indolebutyric acid metabolic process	6.85E-04
32	GO:0015031: protein transport	7.07E-04
33	GO:0006886: intracellular protein transport	8.29E-04
34	GO:1902584: positive regulation of response to water deprivation	9.08E-04
35	GO:0045927: positive regulation of growth	1.15E-03
36	GO:0098719: sodium ion import across plasma membrane	1.15E-03
37	GO:0048827: phyllome development	1.41E-03
38	GO:0048232: male gamete generation	1.41E-03
39	GO:0006555: methionine metabolic process	1.41E-03
40	GO:0043248: proteasome assembly	1.41E-03
41	GO:0010315: auxin efflux	1.41E-03
42	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.41E-03
43	GO:0019509: L-methionine salvage from methylthioadenosine	1.68E-03
44	GO:0034389: lipid particle organization	1.68E-03
45	GO:0080113: regulation of seed growth	1.68E-03
46	GO:0006744: ubiquinone biosynthetic process	1.98E-03
47	GO:0080186: developmental vegetative growth	1.98E-03
48	GO:0009407: toxin catabolic process	2.12E-03
49	GO:0010043: response to zinc ion	2.22E-03
50	GO:0006491: N-glycan processing	2.29E-03
51	GO:0010078: maintenance of root meristem identity	2.29E-03
52	GO:0045087: innate immune response	2.43E-03
53	GO:0009699: phenylpropanoid biosynthetic process	2.61E-03
54	GO:0006002: fructose 6-phosphate metabolic process	2.61E-03
55	GO:0015996: chlorophyll catabolic process	2.61E-03
56	GO:0060321: acceptance of pollen	2.61E-03
57	GO:0046685: response to arsenic-containing substance	2.95E-03
58	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.31E-03
59	GO:0051453: regulation of intracellular pH	3.31E-03
60	GO:0051555: flavonol biosynthetic process	3.68E-03
61	GO:0006032: chitin catabolic process	3.68E-03
62	GO:0009688: abscisic acid biosynthetic process	3.68E-03
63	GO:0048829: root cap development	3.68E-03
64	GO:0016192: vesicle-mediated transport	3.74E-03
65	GO:0010015: root morphogenesis	4.06E-03
66	GO:0000272: polysaccharide catabolic process	4.06E-03
67	GO:0006790: sulfur compound metabolic process	4.45E-03
68	GO:0055046: microgametogenesis	4.86E-03
69	GO:0006096: glycolytic process	4.95E-03
70	GO:0009933: meristem structural organization	5.28E-03
71	GO:0010053: root epidermal cell differentiation	5.71E-03
72	GO:0009225: nucleotide-sugar metabolic process	5.71E-03
73	GO:0019853: L-ascorbic acid biosynthetic process	5.71E-03
74	GO:0090351: seedling development	5.71E-03
75	GO:0046854: phosphatidylinositol phosphorylation	5.71E-03
76	GO:0034976: response to endoplasmic reticulum stress	6.15E-03
77	GO:0008299: isoprenoid biosynthetic process	7.08E-03
78	GO:0019915: lipid storage	7.56E-03
79	GO:0006366: transcription from RNA polymerase II promoter	7.56E-03
80	GO:0016998: cell wall macromolecule catabolic process	7.56E-03
81	GO:0019748: secondary metabolic process	8.05E-03
82	GO:0006730: one-carbon metabolic process	8.05E-03
83	GO:0009693: ethylene biosynthetic process	8.56E-03
84	GO:0042127: regulation of cell proliferation	9.07E-03
85	GO:0042147: retrograde transport, endosome to Golgi	9.60E-03
86	GO:0042631: cellular response to water deprivation	1.01E-02
87	GO:0009646: response to absence of light	1.12E-02
88	GO:0006814: sodium ion transport	1.12E-02
89	GO:0009851: auxin biosynthetic process	1.18E-02
90	GO:0006635: fatty acid beta-oxidation	1.24E-02
91	GO:0016032: viral process	1.30E-02
92	GO:0071281: cellular response to iron ion	1.36E-02
93	GO:0019760: glucosinolate metabolic process	1.42E-02
94	GO:0006914: autophagy	1.42E-02
95	GO:0071805: potassium ion transmembrane transport	1.48E-02
96	GO:0006904: vesicle docking involved in exocytosis	1.48E-02
97	GO:0009651: response to salt stress	1.52E-02
98	GO:0001666: response to hypoxia	1.61E-02
99	GO:0009615: response to virus	1.61E-02
100	GO:0009816: defense response to bacterium, incompatible interaction	1.67E-02
101	GO:0009627: systemic acquired resistance	1.74E-02
102	GO:0048573: photoperiodism, flowering	1.81E-02
103	GO:0048767: root hair elongation	2.01E-02
104	GO:0010311: lateral root formation	2.01E-02
105	GO:0006499: N-terminal protein myristoylation	2.08E-02
106	GO:0007568: aging	2.15E-02
107	GO:0006887: exocytosis	2.60E-02
108	GO:0009744: response to sucrose	2.75E-02
109	GO:0051707: response to other organism	2.75E-02
110	GO:0009751: response to salicylic acid	2.89E-02
111	GO:0009965: leaf morphogenesis	2.99E-02
112	GO:0009846: pollen germination	3.24E-02
113	GO:0055114: oxidation-reduction process	3.34E-02
114	GO:0006486: protein glycosylation	3.40E-02
115	GO:0051603: proteolysis involved in cellular protein catabolic process	3.49E-02
116	GO:0048367: shoot system development	3.92E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
3	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
4	GO:0016504: peptidase activator activity	0.00E+00
5	GO:0008320: protein transmembrane transporter activity	6.22E-05
6	GO:0070401: NADP+ binding	1.25E-04
7	GO:0102293: pheophytinase b activity	1.25E-04
8	GO:0019786: Atg8-specific protease activity	1.25E-04
9	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.25E-04
10	GO:0004476: mannose-6-phosphate isomerase activity	1.25E-04
11	GO:0016229: steroid dehydrogenase activity	1.25E-04
12	GO:0030234: enzyme regulator activity	1.79E-04
13	GO:0010297: heteropolysaccharide binding	2.90E-04
14	GO:0008460: dTDP-glucose 4,6-dehydratase activity	2.90E-04
15	GO:0010280: UDP-L-rhamnose synthase activity	2.90E-04
16	GO:0050347: trans-octaprenyltranstransferase activity	2.90E-04
17	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.90E-04
18	GO:0019779: Atg8 activating enzyme activity	2.90E-04
19	GO:0050377: UDP-glucose 4,6-dehydratase activity	2.90E-04
20	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.90E-04
21	GO:0047746: chlorophyllase activity	2.90E-04
22	GO:0004478: methionine adenosyltransferase activity	4.78E-04
23	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.78E-04
24	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	4.78E-04
25	GO:0004298: threonine-type endopeptidase activity	5.28E-04
26	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	6.85E-04
27	GO:0016656: monodehydroascorbate reductase (NADH) activity	6.85E-04
28	GO:0004165: dodecenoyl-CoA delta-isomerase activity	6.85E-04
29	GO:0070628: proteasome binding	9.08E-04
30	GO:0004031: aldehyde oxidase activity	9.08E-04
31	GO:0050302: indole-3-acetaldehyde oxidase activity	9.08E-04
32	GO:0019776: Atg8 ligase activity	9.08E-04
33	GO:0004659: prenyltransferase activity	9.08E-04
34	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.15E-03
35	GO:0031593: polyubiquitin binding	1.41E-03
36	GO:0036402: proteasome-activating ATPase activity	1.41E-03
37	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.68E-03
38	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.68E-03
39	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.74E-03
40	GO:0003872: 6-phosphofructokinase activity	1.98E-03
41	GO:0043295: glutathione binding	1.98E-03
42	GO:0016887: ATPase activity	2.09E-03
43	GO:0004033: aldo-keto reductase (NADP) activity	2.29E-03
44	GO:0003746: translation elongation factor activity	2.43E-03
45	GO:0004630: phospholipase D activity	2.61E-03
46	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.61E-03
47	GO:0004364: glutathione transferase activity	3.00E-03
48	GO:0050660: flavin adenine dinucleotide binding	3.21E-03
49	GO:0004743: pyruvate kinase activity	3.31E-03
50	GO:0045309: protein phosphorylated amino acid binding	3.31E-03
51	GO:0030955: potassium ion binding	3.31E-03
52	GO:0004568: chitinase activity	3.68E-03
53	GO:0004161: dimethylallyltranstransferase activity	4.06E-03
54	GO:0015386: potassium:proton antiporter activity	4.06E-03
55	GO:0019904: protein domain specific binding	4.06E-03
56	GO:0031625: ubiquitin protein ligase binding	4.64E-03
57	GO:0004867: serine-type endopeptidase inhibitor activity	5.71E-03
58	GO:0017025: TBP-class protein binding	5.71E-03
59	GO:0008061: chitin binding	5.71E-03
60	GO:0004190: aspartic-type endopeptidase activity	5.71E-03
61	GO:0043130: ubiquitin binding	6.61E-03
62	GO:0001046: core promoter sequence-specific DNA binding	6.61E-03
63	GO:0003756: protein disulfide isomerase activity	9.07E-03
64	GO:0016853: isomerase activity	1.12E-02
65	GO:0015385: sodium:proton antiporter activity	1.36E-02
66	GO:0008237: metallopeptidase activity	1.48E-02
67	GO:0051213: dioxygenase activity	1.61E-02
68	GO:0008375: acetylglucosaminyltransferase activity	1.74E-02
69	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.94E-02
70	GO:0008233: peptidase activity	1.95E-02
71	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.15E-02
72	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.15E-02
73	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.30E-02
74	GO:0046872: metal ion binding	2.43E-02
75	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.45E-02
76	GO:0051537: 2 iron, 2 sulfur cluster binding	2.91E-02
77	GO:0009055: electron carrier activity	3.14E-02
78	GO:0003824: catalytic activity	3.26E-02
79	GO:0016298: lipase activity	3.49E-02
80	GO:0022857: transmembrane transporter activity	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.47E-09
2	GO:0008541: proteasome regulatory particle, lid subcomplex	4.56E-06
3	GO:0005829: cytosol	1.81E-05
4	GO:0005839: proteasome core complex	2.23E-05
5	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	6.22E-05
6	GO:0032580: Golgi cisterna membrane	9.26E-05
7	GO:0030130: clathrin coat of trans-Golgi network vesicle	4.78E-04
8	GO:0030132: clathrin coat of coated pit	4.78E-04
9	GO:0005775: vacuolar lumen	6.85E-04
10	GO:0005776: autophagosome	9.08E-04
11	GO:0005945: 6-phosphofructokinase complex	1.15E-03
12	GO:0005886: plasma membrane	1.33E-03
13	GO:0005737: cytoplasm	1.40E-03
14	GO:0030904: retromer complex	1.41E-03
15	GO:0009506: plasmodesma	1.61E-03
16	GO:0031597: cytosolic proteasome complex	1.68E-03
17	GO:0031595: nuclear proteasome complex	1.98E-03
18	GO:0000421: autophagosome membrane	2.29E-03
19	GO:0031982: vesicle	2.29E-03
20	GO:0019773: proteasome core complex, alpha-subunit complex	2.61E-03
21	GO:0005811: lipid particle	2.61E-03
22	GO:0008540: proteasome regulatory particle, base subcomplex	3.31E-03
23	GO:0005783: endoplasmic reticulum	7.11E-03
24	GO:0031410: cytoplasmic vesicle	8.05E-03
25	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.07E-03
26	GO:0016592: mediator complex	1.30E-02
27	GO:0000145: exocyst	1.30E-02
28	GO:0005789: endoplasmic reticulum membrane	1.42E-02
29	GO:0005788: endoplasmic reticulum lumen	1.67E-02
30	GO:0009707: chloroplast outer membrane	1.94E-02
31	GO:0005794: Golgi apparatus	2.19E-02
32	GO:0031902: late endosome membrane	2.60E-02
33	GO:0005856: cytoskeleton	2.99E-02
34	GO:0016021: integral component of membrane	3.08E-02
35	GO:0005635: nuclear envelope	3.57E-02
36	GO:0010008: endosome membrane	3.92E-02
37	GO:0005774: vacuolar membrane	4.73E-02