co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G55540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032206: positive regulation of telomere maintenance	0.00E+00
2	GO:0046486: glycerolipid metabolic process	0.00E+00
3	GO:0006907: pinocytosis	0.00E+00
4	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
8	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
9	GO:0080127: fruit septum development	0.00E+00
10	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
11	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.10E-04
12	GO:0006468: protein phosphorylation	4.32E-04
13	GO:0043087: regulation of GTPase activity	5.46E-04
14	GO:0051013: microtubule severing	5.46E-04
15	GO:0034757: negative regulation of iron ion transport	5.46E-04
16	GO:0045786: negative regulation of cell cycle	5.46E-04
17	GO:0010726: positive regulation of hydrogen peroxide metabolic process	5.46E-04
18	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	5.46E-04
19	GO:0019478: D-amino acid catabolic process	5.46E-04
20	GO:0010070: zygote asymmetric cell division	5.46E-04
21	GO:0007186: G-protein coupled receptor signaling pathway	8.88E-04
22	GO:0001736: establishment of planar polarity	1.17E-03
23	GO:0043039: tRNA aminoacylation	1.17E-03
24	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.17E-03
25	GO:0006650: glycerophospholipid metabolic process	1.17E-03
26	GO:0061062: regulation of nematode larval development	1.17E-03
27	GO:0010271: regulation of chlorophyll catabolic process	1.17E-03
28	GO:0010583: response to cyclopentenone	1.30E-03
29	GO:0009451: RNA modification	1.41E-03
30	GO:0048829: root cap development	1.46E-03
31	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.93E-03
32	GO:0045910: negative regulation of DNA recombination	1.93E-03
33	GO:0034090: maintenance of meiotic sister chromatid cohesion	1.93E-03
34	GO:0046168: glycerol-3-phosphate catabolic process	1.93E-03
35	GO:0080117: secondary growth	1.93E-03
36	GO:0006518: peptide metabolic process	1.93E-03
37	GO:0042780: tRNA 3'-end processing	1.93E-03
38	GO:0010582: floral meristem determinacy	1.94E-03
39	GO:0045017: glycerolipid biosynthetic process	2.80E-03
40	GO:0051639: actin filament network formation	2.80E-03
41	GO:0034059: response to anoxia	2.80E-03
42	GO:0010239: chloroplast mRNA processing	2.80E-03
43	GO:0007276: gamete generation	2.80E-03
44	GO:0006072: glycerol-3-phosphate metabolic process	2.80E-03
45	GO:0009800: cinnamic acid biosynthetic process	2.80E-03
46	GO:0033014: tetrapyrrole biosynthetic process	2.80E-03
47	GO:0051764: actin crosslink formation	3.76E-03
48	GO:0006021: inositol biosynthetic process	3.76E-03
49	GO:0003333: amino acid transmembrane transport	4.19E-03
50	GO:0009107: lipoate biosynthetic process	4.83E-03
51	GO:0010158: abaxial cell fate specification	4.83E-03
52	GO:0009696: salicylic acid metabolic process	4.83E-03
53	GO:0009734: auxin-activated signaling pathway	4.88E-03
54	GO:0009926: auxin polar transport	5.06E-03
55	GO:0006284: base-excision repair	5.46E-03
56	GO:0042127: regulation of cell proliferation	5.46E-03
57	GO:0010942: positive regulation of cell death	5.99E-03
58	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	5.99E-03
59	GO:0016554: cytidine to uridine editing	5.99E-03
60	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.99E-03
61	GO:0006559: L-phenylalanine catabolic process	5.99E-03
62	GO:0048831: regulation of shoot system development	5.99E-03
63	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	5.99E-03
64	GO:0003006: developmental process involved in reproduction	5.99E-03
65	GO:0000271: polysaccharide biosynthetic process	6.40E-03
66	GO:0045489: pectin biosynthetic process	6.90E-03
67	GO:0009958: positive gravitropism	6.90E-03
68	GO:0048444: floral organ morphogenesis	7.24E-03
69	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	7.24E-03
70	GO:0009942: longitudinal axis specification	7.24E-03
71	GO:0048509: regulation of meristem development	7.24E-03
72	GO:0009416: response to light stimulus	7.68E-03
73	GO:0002229: defense response to oomycetes	8.54E-03
74	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	8.57E-03
75	GO:0009610: response to symbiotic fungus	8.57E-03
76	GO:0007050: cell cycle arrest	8.57E-03
77	GO:0010050: vegetative phase change	8.57E-03
78	GO:0000082: G1/S transition of mitotic cell cycle	8.57E-03
79	GO:0010444: guard mother cell differentiation	8.57E-03
80	GO:0010492: maintenance of shoot apical meristem identity	9.98E-03
81	GO:0000105: histidine biosynthetic process	9.98E-03
82	GO:0046620: regulation of organ growth	9.98E-03
83	GO:0009850: auxin metabolic process	9.98E-03
84	GO:0007389: pattern specification process	1.15E-02
85	GO:0071482: cellular response to light stimulus	1.15E-02
86	GO:0009657: plastid organization	1.15E-02
87	GO:0032544: plastid translation	1.15E-02
88	GO:0009624: response to nematode	1.16E-02
89	GO:0009793: embryo development ending in seed dormancy	1.27E-02
90	GO:0000373: Group II intron splicing	1.30E-02
91	GO:0048589: developmental growth	1.30E-02
92	GO:0009056: catabolic process	1.30E-02
93	GO:0048507: meristem development	1.30E-02
94	GO:0046916: cellular transition metal ion homeostasis	1.30E-02
95	GO:0006783: heme biosynthetic process	1.30E-02
96	GO:0009627: systemic acquired resistance	1.39E-02
97	GO:0009733: response to auxin	1.46E-02
98	GO:0015995: chlorophyll biosynthetic process	1.46E-02
99	GO:0000723: telomere maintenance	1.47E-02
100	GO:1900865: chloroplast RNA modification	1.47E-02
101	GO:0009641: shade avoidance	1.64E-02
102	GO:0006298: mismatch repair	1.64E-02
103	GO:0010192: mucilage biosynthetic process	1.64E-02
104	GO:0006782: protoporphyrinogen IX biosynthetic process	1.64E-02
105	GO:0019538: protein metabolic process	1.64E-02
106	GO:0006535: cysteine biosynthetic process from serine	1.64E-02
107	GO:0000160: phosphorelay signal transduction system	1.71E-02
108	GO:0009832: plant-type cell wall biogenesis	1.71E-02
109	GO:0006811: ion transport	1.79E-02
110	GO:0016485: protein processing	1.82E-02
111	GO:0048765: root hair cell differentiation	1.82E-02
112	GO:0008285: negative regulation of cell proliferation	1.82E-02
113	GO:0009750: response to fructose	1.82E-02
114	GO:0006865: amino acid transport	1.97E-02
115	GO:0006790: sulfur compound metabolic process	2.00E-02
116	GO:0005983: starch catabolic process	2.00E-02
117	GO:0045037: protein import into chloroplast stroma	2.00E-02
118	GO:0010152: pollen maturation	2.00E-02
119	GO:0016051: carbohydrate biosynthetic process	2.06E-02
120	GO:0009767: photosynthetic electron transport chain	2.19E-02
121	GO:0040008: regulation of growth	2.20E-02
122	GO:0030001: metal ion transport	2.35E-02
123	GO:0009887: animal organ morphogenesis	2.39E-02
124	GO:0009934: regulation of meristem structural organization	2.39E-02
125	GO:0006302: double-strand break repair	2.39E-02
126	GO:0048467: gynoecium development	2.39E-02
127	GO:0010020: chloroplast fission	2.39E-02
128	GO:0010207: photosystem II assembly	2.39E-02
129	GO:0046854: phosphatidylinositol phosphorylation	2.59E-02
130	GO:0009825: multidimensional cell growth	2.59E-02
131	GO:0080188: RNA-directed DNA methylation	2.59E-02
132	GO:0009744: response to sucrose	2.66E-02
133	GO:0007166: cell surface receptor signaling pathway	2.76E-02
134	GO:0042546: cell wall biogenesis	2.77E-02
135	GO:0006863: purine nucleobase transport	2.80E-02
136	GO:0009833: plant-type primary cell wall biogenesis	2.80E-02
137	GO:0071555: cell wall organization	2.96E-02
138	GO:0009636: response to toxic substance	2.99E-02
139	GO:0019344: cysteine biosynthetic process	3.01E-02
140	GO:0051017: actin filament bundle assembly	3.01E-02
141	GO:0051302: regulation of cell division	3.23E-02
142	GO:0006418: tRNA aminoacylation for protein translation	3.23E-02
143	GO:0006874: cellular calcium ion homeostasis	3.23E-02
144	GO:0043622: cortical microtubule organization	3.23E-02
145	GO:0006306: DNA methylation	3.46E-02
146	GO:0051321: meiotic cell cycle	3.46E-02
147	GO:0009736: cytokinin-activated signaling pathway	3.59E-02
148	GO:0016226: iron-sulfur cluster assembly	3.69E-02
149	GO:0071215: cellular response to abscisic acid stimulus	3.92E-02
150	GO:0009686: gibberellin biosynthetic process	3.92E-02
151	GO:0010082: regulation of root meristem growth	3.92E-02
152	GO:0009909: regulation of flower development	3.97E-02
153	GO:0009658: chloroplast organization	4.02E-02
154	GO:0048443: stamen development	4.17E-02
155	GO:0010091: trichome branching	4.17E-02
156	GO:0048316: seed development	4.37E-02
157	GO:0016117: carotenoid biosynthetic process	4.41E-02
158	GO:0070417: cellular response to cold	4.41E-02
159	GO:0010087: phloem or xylem histogenesis	4.66E-02
160	GO:0048653: anther development	4.66E-02
161	GO:0000226: microtubule cytoskeleton organization	4.66E-02
162	GO:0010182: sugar mediated signaling pathway	4.91E-02
163	GO:0048868: pollen tube development	4.91E-02
164	GO:0009741: response to brassinosteroid	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0004401: histidinol-phosphatase activity	0.00E+00
4	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
5	GO:0010011: auxin binding	1.60E-04
6	GO:0010328: auxin influx transmembrane transporter activity	1.60E-04
7	GO:0008725: DNA-3-methyladenine glycosylase activity	2.44E-04
8	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.46E-04
9	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	5.46E-04
10	GO:0004831: tyrosine-tRNA ligase activity	5.46E-04
11	GO:0008568: microtubule-severing ATPase activity	5.46E-04
12	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	5.46E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.46E-04
14	GO:0016301: kinase activity	7.17E-04
15	GO:0004519: endonuclease activity	8.47E-04
16	GO:0050017: L-3-cyanoalanine synthase activity	1.17E-03
17	GO:0017118: lipoyltransferase activity	1.17E-03
18	GO:0010296: prenylcysteine methylesterase activity	1.17E-03
19	GO:0016415: octanoyltransferase activity	1.17E-03
20	GO:0004047: aminomethyltransferase activity	1.17E-03
21	GO:0052832: inositol monophosphate 3-phosphatase activity	1.17E-03
22	GO:0004109: coproporphyrinogen oxidase activity	1.17E-03
23	GO:0008805: carbon-monoxide oxygenase activity	1.17E-03
24	GO:0008934: inositol monophosphate 1-phosphatase activity	1.17E-03
25	GO:0052833: inositol monophosphate 4-phosphatase activity	1.17E-03
26	GO:0050736: O-malonyltransferase activity	1.17E-03
27	GO:0009884: cytokinin receptor activity	1.17E-03
28	GO:0019156: isoamylase activity	1.17E-03
29	GO:0004871: signal transducer activity	1.79E-03
30	GO:0005034: osmosensor activity	1.93E-03
31	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.93E-03
32	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.93E-03
33	GO:0045548: phenylalanine ammonia-lyase activity	1.93E-03
34	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.93E-03
35	GO:0080031: methyl salicylate esterase activity	2.80E-03
36	GO:0043047: single-stranded telomeric DNA binding	2.80E-03
37	GO:0004222: metalloendopeptidase activity	3.06E-03
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.76E-03
39	GO:0043495: protein anchor	3.76E-03
40	GO:0004930: G-protein coupled receptor activity	3.76E-03
41	GO:0043424: protein histidine kinase binding	3.81E-03
42	GO:0004674: protein serine/threonine kinase activity	4.15E-03
43	GO:0003723: RNA binding	4.31E-03
44	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.59E-03
45	GO:0005471: ATP:ADP antiporter activity	4.83E-03
46	GO:0043621: protein self-association	5.59E-03
47	GO:0030983: mismatched DNA binding	5.99E-03
48	GO:0080030: methyl indole-3-acetate esterase activity	5.99E-03
49	GO:0004709: MAP kinase kinase kinase activity	5.99E-03
50	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	5.99E-03
51	GO:0030332: cyclin binding	5.99E-03
52	GO:0004556: alpha-amylase activity	5.99E-03
53	GO:0004462: lactoylglutathione lyase activity	5.99E-03
54	GO:0019900: kinase binding	7.24E-03
55	GO:0004124: cysteine synthase activity	7.24E-03
56	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	7.24E-03
57	GO:0010181: FMN binding	7.43E-03
58	GO:0019901: protein kinase binding	7.97E-03
59	GO:0042162: telomeric DNA binding	8.57E-03
60	GO:0019899: enzyme binding	8.57E-03
61	GO:0016759: cellulose synthase activity	1.04E-02
62	GO:0003779: actin binding	1.12E-02
63	GO:0046914: transition metal ion binding	1.15E-02
64	GO:0009672: auxin:proton symporter activity	1.47E-02
65	GO:0004673: protein histidine kinase activity	1.64E-02
66	GO:0005096: GTPase activator activity	1.71E-02
67	GO:0008327: methyl-CpG binding	1.82E-02
68	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.14E-02
69	GO:0000155: phosphorelay sensor kinase activity	2.19E-02
70	GO:0009982: pseudouridine synthase activity	2.19E-02
71	GO:0010329: auxin efflux transmembrane transporter activity	2.19E-02
72	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.26E-02
73	GO:0005515: protein binding	2.32E-02
74	GO:0004672: protein kinase activity	2.55E-02
75	GO:0003712: transcription cofactor activity	2.59E-02
76	GO:0005217: intracellular ligand-gated ion channel activity	2.59E-02
77	GO:0004970: ionotropic glutamate receptor activity	2.59E-02
78	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.80E-02
79	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.80E-02
80	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.80E-02
81	GO:0015293: symporter activity	2.99E-02
82	GO:0004857: enzyme inhibitor activity	3.01E-02
83	GO:0008134: transcription factor binding	3.01E-02
84	GO:0005345: purine nucleobase transmembrane transporter activity	3.23E-02
85	GO:0015079: potassium ion transmembrane transporter activity	3.23E-02
86	GO:0008408: 3'-5' exonuclease activity	3.46E-02
87	GO:0016760: cellulose synthase (UDP-forming) activity	3.92E-02
88	GO:0030570: pectate lyase activity	3.92E-02
89	GO:0015171: amino acid transmembrane transporter activity	3.97E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	4.41E-02
91	GO:0005524: ATP binding	4.55E-02
92	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0000408: EKC/KEOPS complex	0.00E+00
4	GO:0009537: proplastid	0.00E+00
5	GO:0009507: chloroplast	3.37E-04
6	GO:0000791: euchromatin	5.46E-04
7	GO:0010370: perinucleolar chromocenter	5.46E-04
8	GO:0009569: chloroplast starch grain	1.17E-03
9	GO:0009513: etioplast	1.17E-03
10	GO:0005697: telomerase holoenzyme complex	1.17E-03
11	GO:0030870: Mre11 complex	1.17E-03
12	GO:0009509: chromoplast	1.93E-03
13	GO:0032432: actin filament bundle	2.80E-03
14	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.80E-03
15	GO:0000795: synaptonemal complex	4.83E-03
16	GO:0009986: cell surface	8.57E-03
17	GO:0005886: plasma membrane	9.66E-03
18	GO:0009501: amyloplast	9.98E-03
19	GO:0000784: nuclear chromosome, telomeric region	1.15E-02
20	GO:0005720: nuclear heterochromatin	1.30E-02
21	GO:0009707: chloroplast outer membrane	1.62E-02
22	GO:0005884: actin filament	1.82E-02
23	GO:0009570: chloroplast stroma	2.06E-02
24	GO:0016602: CCAAT-binding factor complex	2.19E-02
25	GO:0009574: preprophase band	2.19E-02
26	GO:0005875: microtubule associated complex	2.80E-02
27	GO:0000419: DNA-directed RNA polymerase V complex	2.80E-02
28	GO:0043234: protein complex	2.80E-02
29	GO:0009532: plastid stroma	3.46E-02
30	GO:0005871: kinesin complex	4.41E-02